Wall clock time and date at job start Tue Mar 31 2020 11:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 119.99532 * 2 1 4 4 H 1.48492 * 109.47121 * 269.99740 * 3 2 1 5 5 H 1.48500 * 109.47053 * 30.00182 * 3 2 1 6 6 H 1.48501 * 109.46693 * 149.99735 * 3 2 1 7 7 C 1.38814 * 120.00508 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00088 * 197.35322 * 7 2 1 9 9 N 1.36934 * 119.99360 * 17.35394 * 7 2 1 10 10 C 1.46920 * 120.63417 * 27.67171 * 9 7 2 11 11 C 1.53200 * 108.77555 * 126.43122 * 10 9 7 12 12 C 1.53042 * 109.31399 * 54.63626 * 11 10 9 13 13 C 1.53046 * 109.53438 * 298.63613 * 12 11 10 14 14 H 1.08998 * 109.49536 * 301.37709 * 13 12 11 15 15 N 1.46499 * 109.49725 * 181.31605 * 13 12 11 16 16 C 1.34778 * 120.00250 * 155.06230 * 15 13 12 17 17 O 1.21275 * 119.99664 * 359.97438 * 16 15 13 18 18 C 1.50695 * 119.99891 * 180.02562 * 16 15 13 19 19 H 1.09001 * 110.88899 * 56.48395 * 18 16 15 20 20 C 1.54378 * 110.82046 * 180.02562 * 18 16 15 21 21 C 1.51215 * 105.11949 * 91.93100 * 20 18 16 22 22 C 1.38748 * 130.69594 * 197.16198 * 21 20 18 23 23 C 1.38575 * 118.55720 * 179.97438 * 22 21 20 24 24 C 1.38224 * 118.99260 * 0.26218 * 23 22 21 25 25 N 1.31691 * 120.79950 * 359.45538 * 24 23 22 26 26 C 1.32297 * 122.03012 * 0.55961 * 25 24 23 27 27 C 1.51475 * 130.14114 * 179.70359 * 26 25 24 28 28 C 1.46939 * 120.60230 * 207.68923 * 9 7 2 29 29 H 0.96998 * 120.00147 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.59214 * 6.64558 * 10 9 7 31 31 H 1.08997 * 109.58847 * 246.21268 * 10 9 7 32 32 H 1.08999 * 109.49738 * 294.68372 * 11 10 9 33 33 H 1.09004 * 109.52303 * 174.60257 * 11 10 9 34 34 H 1.08997 * 109.45828 * 178.61564 * 12 11 10 35 35 H 1.09002 * 109.45798 * 58.65230 * 12 11 10 36 36 H 0.97008 * 120.00002 * 335.06690 * 15 13 12 37 37 H 1.09000 * 110.30849 * 333.01890 * 20 18 16 38 38 H 1.09004 * 110.39600 * 210.88917 * 20 18 16 39 39 H 1.07999 * 120.71591 * 359.95033 * 22 21 20 40 40 H 1.08005 * 120.49906 * 179.97438 * 23 22 21 41 41 H 1.07998 * 119.59904 * 179.70475 * 24 23 22 42 42 H 1.09005 * 110.29537 * 43.87729 * 27 26 25 43 43 H 1.09002 * 110.37367 * 281.79766 * 27 26 25 44 44 H 1.08995 * 109.55985 * 113.76294 * 28 9 7 45 45 H 1.09007 * 109.61301 * 353.33814 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0535 -1.2232 0.2795 9 7 1.3725 -2.3611 -0.3527 10 6 0.2278 -2.3350 -1.2734 11 6 0.5003 -3.3060 -2.4266 12 6 0.8180 -4.6909 -1.8578 13 6 2.0739 -4.6107 -0.9868 14 1 2.9078 -4.2419 -1.5840 15 7 2.3952 -5.9426 -0.4683 16 6 3.6619 -6.2423 -0.1189 17 8 4.5359 -5.4094 -0.2343 18 6 3.9925 -7.6126 0.4139 19 1 3.6927 -8.3869 -0.2923 20 6 5.4960 -7.7243 0.7459 21 6 5.6081 -7.3354 2.2029 22 6 6.7093 -6.9513 2.9545 23 6 6.5233 -6.6443 4.2930 24 6 5.2535 -6.7365 4.8313 25 7 4.2300 -7.0995 4.0863 26 6 4.3664 -7.4005 2.8053 27 6 3.3318 -7.8401 1.7900 28 6 1.8200 -3.6543 0.1826 29 1 -0.4850 0.8400 -0.0004 30 1 0.0987 -1.3269 -1.6674 31 1 -0.6743 -2.6409 -0.7437 32 1 1.3490 -2.9490 -3.0100 33 1 -0.3803 -3.3686 -3.0659 34 1 0.9881 -5.3895 -2.6770 35 1 -0.0211 -5.0367 -1.2541 36 1 1.6962 -6.6090 -0.3765 37 1 6.0724 -7.0379 0.1256 38 1 5.8424 -8.7474 0.5995 39 1 7.6901 -6.8932 2.5062 40 1 7.3586 -6.3422 4.9073 41 1 5.0982 -6.5042 5.8745 42 1 2.4307 -7.2336 1.8816 43 1 3.0922 -8.8949 1.9246 44 1 1.0479 -4.0675 0.8316 45 1 2.7412 -3.5169 0.7488 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009327715.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:24 Heat of formation + Delta-G solvation = 15.402176 kcal Electronic energy + Delta-G solvation = -26497.269870 eV Core-core repulsion = 22900.622268 eV Total energy + Delta-G solvation = -3596.647602 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.07349 -39.48785 -37.49263 -35.86228 -34.31523 -32.75333 -32.36954 -30.44993 -29.96163 -28.43203 -27.91876 -25.26242 -24.40470 -22.46725 -22.07297 -21.96543 -21.28777 -19.84961 -19.19197 -17.33438 -16.86164 -16.67548 -16.22485 -15.70376 -15.26579 -14.91104 -14.66163 -14.52140 -13.93500 -13.67868 -13.59084 -13.33464 -13.11139 -13.01792 -12.90848 -12.40517 -12.35805 -12.22144 -11.96056 -11.78092 -11.70812 -11.46000 -11.06914 -10.86474 -10.78449 -10.24415 -10.20175 -9.92608 -9.88389 -9.79216 -9.61592 -9.48416 -9.35357 -8.82666 -8.76836 -8.37584 -6.64937 -5.75639 -3.17650 1.01785 1.22260 2.78959 3.31937 3.42033 3.48332 3.51286 3.66786 3.82619 4.27003 4.47671 4.53724 4.71327 4.75211 4.84548 5.04124 5.15089 5.18551 5.30978 5.35325 5.40252 5.48327 5.55226 5.60003 5.64450 5.65606 5.73916 5.75098 5.85228 6.05266 6.09567 6.14779 6.17955 6.25593 6.54225 6.61652 6.62612 6.69836 6.71214 6.86168 7.02234 7.37785 7.66533 7.75362 7.85924 7.92678 8.43648 8.50358 9.25144 9.87302 10.42897 11.33065 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013871 B = 0.003758 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.131214 B = 7449.805209 C = 8649.710676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.114 4.114 13 C 0.126 3.874 14 H 0.085 0.915 15 N -0.721 5.721 16 C 0.516 3.484 17 O -0.530 6.530 18 C -0.112 4.112 19 H 0.116 0.884 20 C -0.066 4.066 21 C -0.137 4.137 22 C -0.063 4.063 23 C -0.174 4.174 24 C 0.100 3.900 25 N -0.477 5.477 26 C 0.116 3.884 27 C -0.061 4.061 28 C 0.143 3.857 29 H 0.253 0.747 30 H 0.089 0.911 31 H 0.019 0.981 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.395 0.605 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.157 0.843 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.017 0.983 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.742 -20.097 1.595 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.042 3.958 11 C -0.180 4.180 12 C -0.152 4.152 13 C 0.021 3.979 14 H 0.103 0.897 15 N -0.371 5.371 16 C 0.301 3.699 17 O -0.406 6.406 18 C -0.133 4.133 19 H 0.134 0.866 20 C -0.103 4.103 21 C -0.139 4.139 22 C -0.089 4.089 23 C -0.193 4.193 24 C -0.057 4.057 25 N -0.186 5.186 26 C -0.021 4.021 27 C -0.099 4.099 28 C 0.016 3.984 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.228 0.772 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.174 0.826 42 H 0.110 0.890 43 H 0.118 0.882 44 H 0.035 0.965 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.442 -19.350 1.918 20.820 hybrid contribution 0.905 0.674 -0.172 1.141 sum 8.347 -18.676 1.746 20.531 Atomic orbital electron populations 1.70042 1.05212 1.25453 1.54162 1.25011 0.95290 0.98347 1.00927 0.86275 0.79187 0.83567 0.77726 1.21389 1.21752 1.20408 1.19233 0.92805 0.84713 1.41177 0.91625 1.44005 1.35605 1.01063 1.50378 1.20841 0.88554 0.98558 0.87868 1.22183 1.00414 0.95232 1.00123 1.21674 0.96759 0.98565 0.98232 1.21740 0.97757 0.81325 0.97097 0.89677 1.46111 1.09139 1.15891 1.65961 1.20232 0.82850 0.89088 0.77708 1.90723 1.46994 1.49657 1.53228 1.22051 0.97248 0.96461 0.97585 0.86642 1.20869 0.95075 1.02370 0.92022 1.21384 0.94857 1.00268 0.97362 1.21045 0.98601 0.95725 0.93519 1.22061 0.99161 1.02247 0.95875 1.22608 0.87944 0.95656 0.99535 1.66820 1.34779 1.11048 1.05938 1.21725 0.94323 0.95426 0.90644 1.20932 0.97034 1.02781 0.89128 1.21168 0.97827 0.86844 0.92600 0.93680 0.89257 0.96327 0.92460 0.92716 0.93095 0.92234 0.77192 0.88393 0.89294 0.85027 0.84615 0.82621 0.88974 0.88240 0.96539 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 11.19 55.49 0.62 -26.05 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 22.46 29.59 -169.99 -5.03 17.43 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.25 -7.19 9.58 -15.06 -0.14 -7.33 16 8 H 0.07 1.92 7.89 -52.49 -0.41 1.51 16 9 N -0.59 -15.27 3.00 -172.32 -0.52 -15.79 16 10 C 0.17 4.01 5.31 -3.71 -0.02 3.99 16 11 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 12 C -0.11 -1.83 5.36 -26.69 -0.14 -1.97 16 13 C 0.13 2.27 2.60 -67.81 -0.18 2.09 16 14 H 0.09 1.77 7.58 -51.93 -0.39 1.37 16 15 N -0.72 -10.06 4.96 -53.69 -0.27 -10.33 16 16 C 0.52 7.60 7.05 -10.99 -0.08 7.52 16 17 O -0.53 -10.32 15.19 5.56 0.08 -10.24 16 18 C -0.11 -1.12 3.47 -90.36 -0.31 -1.43 16 19 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 20 C -0.07 -0.68 6.08 -26.91 -0.16 -0.84 16 21 C -0.14 -1.69 6.16 -104.21 -0.64 -2.33 16 22 C -0.06 -0.71 10.17 -39.27 -0.40 -1.11 16 23 C -0.17 -1.84 10.12 -39.46 -0.40 -2.24 16 24 C 0.10 1.19 11.18 -17.62 -0.20 1.00 16 25 N -0.48 -6.87 10.35 -9.19 -0.10 -6.97 16 26 C 0.12 1.55 7.32 -82.04 -0.60 0.95 16 27 C -0.06 -0.62 6.30 -26.81 -0.17 -0.79 16 28 C 0.14 3.22 6.09 -3.71 -0.02 3.20 16 29 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.09 2.39 6.04 -51.93 -0.31 2.08 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.39 4.12 8.60 -40.82 -0.35 3.77 16 37 H 0.10 1.18 7.03 -51.93 -0.37 0.81 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 41 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.09 1.02 7.80 -51.93 -0.41 0.61 16 43 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 1.37 7.93 -51.92 -0.41 0.96 16 LS Contribution 362.00 15.07 5.46 5.46 Total: -1.00 -35.16 362.00 -10.32 -45.48 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.86 Total: 3.09 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -3.71 Total: -2.09 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.26 Total: -59.13 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.16 -10.32 -45.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009327715.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.885 kcal (2) G-P(sol) polarization free energy of solvation -35.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds