Wall clock time and date at job start Tue Mar 31 2020 11:55:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31625 * 1
3 3 Si 1.86805 * 119.99532 * 2 1
4 4 H 1.48492 * 109.47121 * 269.99740 * 3 2 1
5 5 H 1.48500 * 109.47053 * 30.00182 * 3 2 1
6 6 H 1.48501 * 109.46693 * 149.99735 * 3 2 1
7 7 C 1.38814 * 120.00508 * 179.97438 * 2 1 3
8 8 H 1.07991 * 120.00088 * 197.35322 * 7 2 1
9 9 N 1.36934 * 119.99360 * 17.35394 * 7 2 1
10 10 C 1.46920 * 120.63417 * 27.67171 * 9 7 2
11 11 C 1.53200 * 108.77555 * 126.43122 * 10 9 7
12 12 C 1.53042 * 109.31399 * 54.63626 * 11 10 9
13 13 C 1.53046 * 109.53438 * 298.63613 * 12 11 10
14 14 H 1.08998 * 109.49536 * 301.37709 * 13 12 11
15 15 N 1.46499 * 109.49725 * 181.31605 * 13 12 11
16 16 C 1.34778 * 120.00250 * 155.06230 * 15 13 12
17 17 O 1.21275 * 119.99664 * 359.97438 * 16 15 13
18 18 C 1.50695 * 119.99891 * 180.02562 * 16 15 13
19 19 H 1.09001 * 110.88899 * 56.48395 * 18 16 15
20 20 C 1.54378 * 110.82046 * 180.02562 * 18 16 15
21 21 C 1.51215 * 105.11949 * 91.93100 * 20 18 16
22 22 C 1.38748 * 130.69594 * 197.16198 * 21 20 18
23 23 C 1.38575 * 118.55720 * 179.97438 * 22 21 20
24 24 C 1.38224 * 118.99260 * 0.26218 * 23 22 21
25 25 N 1.31691 * 120.79950 * 359.45538 * 24 23 22
26 26 C 1.32297 * 122.03012 * 0.55961 * 25 24 23
27 27 C 1.51475 * 130.14114 * 179.70359 * 26 25 24
28 28 C 1.46939 * 120.60230 * 207.68923 * 9 7 2
29 29 H 0.96998 * 120.00147 * 0.02562 * 1 2 3
30 30 H 1.09001 * 109.59214 * 6.64558 * 10 9 7
31 31 H 1.08997 * 109.58847 * 246.21268 * 10 9 7
32 32 H 1.08999 * 109.49738 * 294.68372 * 11 10 9
33 33 H 1.09004 * 109.52303 * 174.60257 * 11 10 9
34 34 H 1.08997 * 109.45828 * 178.61564 * 12 11 10
35 35 H 1.09002 * 109.45798 * 58.65230 * 12 11 10
36 36 H 0.97008 * 120.00002 * 335.06690 * 15 13 12
37 37 H 1.09000 * 110.30849 * 333.01890 * 20 18 16
38 38 H 1.09004 * 110.39600 * 210.88917 * 20 18 16
39 39 H 1.07999 * 120.71591 * 359.95033 * 22 21 20
40 40 H 1.08005 * 120.49906 * 179.97438 * 23 22 21
41 41 H 1.07998 * 119.59904 * 179.70475 * 24 23 22
42 42 H 1.09005 * 110.29537 * 43.87729 * 27 26 25
43 43 H 1.09002 * 110.37367 * 281.79766 * 27 26 25
44 44 H 1.08995 * 109.55985 * 113.76294 * 28 9 7
45 45 H 1.09007 * 109.61301 * 353.33814 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6179 0.0000
4 1 2.4976 2.0465 -1.4000
5 1 1.4475 2.6527 0.7001
6 1 3.5477 1.4403 0.7001
7 6 2.0104 -1.2021 0.0005
8 1 3.0535 -1.2232 0.2795
9 7 1.3725 -2.3611 -0.3527
10 6 0.2278 -2.3350 -1.2734
11 6 0.5003 -3.3060 -2.4266
12 6 0.8180 -4.6909 -1.8578
13 6 2.0739 -4.6107 -0.9868
14 1 2.9078 -4.2419 -1.5840
15 7 2.3952 -5.9426 -0.4683
16 6 3.6619 -6.2423 -0.1189
17 8 4.5359 -5.4094 -0.2343
18 6 3.9925 -7.6126 0.4139
19 1 3.6927 -8.3869 -0.2923
20 6 5.4960 -7.7243 0.7459
21 6 5.6081 -7.3354 2.2029
22 6 6.7093 -6.9513 2.9545
23 6 6.5233 -6.6443 4.2930
24 6 5.2535 -6.7365 4.8313
25 7 4.2300 -7.0995 4.0863
26 6 4.3664 -7.4005 2.8053
27 6 3.3318 -7.8401 1.7900
28 6 1.8200 -3.6543 0.1826
29 1 -0.4850 0.8400 -0.0004
30 1 0.0987 -1.3269 -1.6674
31 1 -0.6743 -2.6409 -0.7437
32 1 1.3490 -2.9490 -3.0100
33 1 -0.3803 -3.3686 -3.0659
34 1 0.9881 -5.3895 -2.6770
35 1 -0.0211 -5.0367 -1.2541
36 1 1.6962 -6.6090 -0.3765
37 1 6.0724 -7.0379 0.1256
38 1 5.8424 -8.7474 0.5995
39 1 7.6901 -6.8932 2.5062
40 1 7.3586 -6.3422 4.9073
41 1 5.0982 -6.5042 5.8745
42 1 2.4307 -7.2336 1.8816
43 1 3.0922 -8.8949 1.9246
44 1 1.0479 -4.0675 0.8316
45 1 2.7412 -3.5169 0.7488
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001009327715.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:55:24
Heat of formation + Delta-G solvation = 15.402176 kcal
Electronic energy + Delta-G solvation = -26497.269870 eV
Core-core repulsion = 22900.622268 eV
Total energy + Delta-G solvation = -3596.647602 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-41.07349 -39.48785 -37.49263 -35.86228 -34.31523 -32.75333 -32.36954 -30.44993
-29.96163 -28.43203 -27.91876 -25.26242 -24.40470 -22.46725 -22.07297 -21.96543
-21.28777 -19.84961 -19.19197 -17.33438 -16.86164 -16.67548 -16.22485 -15.70376
-15.26579 -14.91104 -14.66163 -14.52140 -13.93500 -13.67868 -13.59084 -13.33464
-13.11139 -13.01792 -12.90848 -12.40517 -12.35805 -12.22144 -11.96056 -11.78092
-11.70812 -11.46000 -11.06914 -10.86474 -10.78449 -10.24415 -10.20175 -9.92608
-9.88389 -9.79216 -9.61592 -9.48416 -9.35357 -8.82666 -8.76836 -8.37584
-6.64937 -5.75639 -3.17650 1.01785 1.22260 2.78959 3.31937 3.42033
3.48332 3.51286 3.66786 3.82619 4.27003 4.47671 4.53724 4.71327
4.75211 4.84548 5.04124 5.15089 5.18551 5.30978 5.35325 5.40252
5.48327 5.55226 5.60003 5.64450 5.65606 5.73916 5.75098 5.85228
6.05266 6.09567 6.14779 6.17955 6.25593 6.54225 6.61652 6.62612
6.69836 6.71214 6.86168 7.02234 7.37785 7.66533 7.75362 7.85924
7.92678 8.43648 8.50358 9.25144 9.87302 10.42897 11.33065
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.013871 B = 0.003758 C = 0.003236
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2018.131214 B = 7449.805209 C = 8649.710676
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.904 5.904
2 C 0.003 3.997
3 Si 0.902 3.098
4 H -0.287 1.287
5 H -0.291 1.291
6 H -0.279 1.279
7 C -0.250 4.250
8 H 0.066 0.934
9 N -0.588 5.588
10 C 0.167 3.833
11 C -0.140 4.140
12 C -0.114 4.114
13 C 0.126 3.874
14 H 0.085 0.915
15 N -0.721 5.721
16 C 0.516 3.484
17 O -0.530 6.530
18 C -0.112 4.112
19 H 0.116 0.884
20 C -0.066 4.066
21 C -0.137 4.137
22 C -0.063 4.063
23 C -0.174 4.174
24 C 0.100 3.900
25 N -0.477 5.477
26 C 0.116 3.884
27 C -0.061 4.061
28 C 0.143 3.857
29 H 0.253 0.747
30 H 0.089 0.911
31 H 0.019 0.981
32 H 0.057 0.943
33 H 0.054 0.946
34 H 0.050 0.950
35 H 0.059 0.941
36 H 0.395 0.605
37 H 0.098 0.902
38 H 0.089 0.911
39 H 0.132 0.868
40 H 0.136 0.864
41 H 0.157 0.843
42 H 0.092 0.908
43 H 0.099 0.901
44 H 0.017 0.983
45 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.742 -20.097 1.595 21.595
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.549 5.549
2 C -0.196 4.196
3 Si 0.732 3.268
4 H -0.214 1.214
5 H -0.218 1.218
6 H -0.204 1.204
7 C -0.379 4.379
8 H 0.084 0.916
9 N -0.311 5.311
10 C 0.042 3.958
11 C -0.180 4.180
12 C -0.152 4.152
13 C 0.021 3.979
14 H 0.103 0.897
15 N -0.371 5.371
16 C 0.301 3.699
17 O -0.406 6.406
18 C -0.133 4.133
19 H 0.134 0.866
20 C -0.103 4.103
21 C -0.139 4.139
22 C -0.089 4.089
23 C -0.193 4.193
24 C -0.057 4.057
25 N -0.186 5.186
26 C -0.021 4.021
27 C -0.099 4.099
28 C 0.016 3.984
29 H 0.063 0.937
30 H 0.107 0.893
31 H 0.037 0.963
32 H 0.075 0.925
33 H 0.073 0.927
34 H 0.069 0.931
35 H 0.078 0.922
36 H 0.228 0.772
37 H 0.116 0.884
38 H 0.107 0.893
39 H 0.150 0.850
40 H 0.154 0.846
41 H 0.174 0.826
42 H 0.110 0.890
43 H 0.118 0.882
44 H 0.035 0.965
45 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 7.442 -19.350 1.918 20.820
hybrid contribution 0.905 0.674 -0.172 1.141
sum 8.347 -18.676 1.746 20.531
Atomic orbital electron populations
1.70042 1.05212 1.25453 1.54162 1.25011 0.95290 0.98347 1.00927
0.86275 0.79187 0.83567 0.77726 1.21389 1.21752 1.20408 1.19233
0.92805 0.84713 1.41177 0.91625 1.44005 1.35605 1.01063 1.50378
1.20841 0.88554 0.98558 0.87868 1.22183 1.00414 0.95232 1.00123
1.21674 0.96759 0.98565 0.98232 1.21740 0.97757 0.81325 0.97097
0.89677 1.46111 1.09139 1.15891 1.65961 1.20232 0.82850 0.89088
0.77708 1.90723 1.46994 1.49657 1.53228 1.22051 0.97248 0.96461
0.97585 0.86642 1.20869 0.95075 1.02370 0.92022 1.21384 0.94857
1.00268 0.97362 1.21045 0.98601 0.95725 0.93519 1.22061 0.99161
1.02247 0.95875 1.22608 0.87944 0.95656 0.99535 1.66820 1.34779
1.11048 1.05938 1.21725 0.94323 0.95426 0.90644 1.20932 0.97034
1.02781 0.89128 1.21168 0.97827 0.86844 0.92600 0.93680 0.89257
0.96327 0.92460 0.92716 0.93095 0.92234 0.77192 0.88393 0.89294
0.85027 0.84615 0.82621 0.88974 0.88240 0.96539 0.92615
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.67 11.19 55.49 0.62 -26.05 16
2 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16
3 Si 0.90 22.46 29.59 -169.99 -5.03 17.43 16
4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16
6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
7 C -0.25 -7.19 9.58 -15.06 -0.14 -7.33 16
8 H 0.07 1.92 7.89 -52.49 -0.41 1.51 16
9 N -0.59 -15.27 3.00 -172.32 -0.52 -15.79 16
10 C 0.17 4.01 5.31 -3.71 -0.02 3.99 16
11 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16
12 C -0.11 -1.83 5.36 -26.69 -0.14 -1.97 16
13 C 0.13 2.27 2.60 -67.81 -0.18 2.09 16
14 H 0.09 1.77 7.58 -51.93 -0.39 1.37 16
15 N -0.72 -10.06 4.96 -53.69 -0.27 -10.33 16
16 C 0.52 7.60 7.05 -10.99 -0.08 7.52 16
17 O -0.53 -10.32 15.19 5.56 0.08 -10.24 16
18 C -0.11 -1.12 3.47 -90.36 -0.31 -1.43 16
19 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16
20 C -0.07 -0.68 6.08 -26.91 -0.16 -0.84 16
21 C -0.14 -1.69 6.16 -104.21 -0.64 -2.33 16
22 C -0.06 -0.71 10.17 -39.27 -0.40 -1.11 16
23 C -0.17 -1.84 10.12 -39.46 -0.40 -2.24 16
24 C 0.10 1.19 11.18 -17.62 -0.20 1.00 16
25 N -0.48 -6.87 10.35 -9.19 -0.10 -6.97 16
26 C 0.12 1.55 7.32 -82.04 -0.60 0.95 16
27 C -0.06 -0.62 6.30 -26.81 -0.17 -0.79 16
28 C 0.14 3.22 6.09 -3.71 -0.02 3.20 16
29 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16
30 H 0.09 2.39 6.04 -51.93 -0.31 2.08 16
31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16
34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16
36 H 0.39 4.12 8.60 -40.82 -0.35 3.77 16
37 H 0.10 1.18 7.03 -51.93 -0.37 0.81 16
38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16
39 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16
40 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16
41 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16
42 H 0.09 1.02 7.80 -51.93 -0.41 0.61 16
43 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16
44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16
45 H 0.06 1.37 7.93 -51.92 -0.41 0.96 16
LS Contribution 362.00 15.07 5.46 5.46
Total: -1.00 -35.16 362.00 -10.32 -45.48
By element:
Atomic # 1 Polarization: 9.96 SS G_CDS: -6.86 Total: 3.09 kcal
Atomic # 6 Polarization: 1.62 SS G_CDS: -3.71 Total: -2.09 kcal
Atomic # 7 Polarization: -58.87 SS G_CDS: -0.26 Total: -59.13 kcal
Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal
Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal
Total LS contribution 5.46 Total: 5.46 kcal
Total: -35.16 -10.32 -45.48 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001009327715.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.885 kcal
(2) G-P(sol) polarization free energy of solvation -35.159 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.726 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.324 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.482 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.402 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds