Wall clock time and date at job start Tue Mar 31 2020 11:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 119.99532 * 2 1 4 4 H 1.48492 * 109.47121 * 269.99740 * 3 2 1 5 5 H 1.48500 * 109.47053 * 30.00182 * 3 2 1 6 6 H 1.48501 * 109.46693 * 149.99735 * 3 2 1 7 7 C 1.38814 * 120.00508 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00088 * 197.35322 * 7 2 1 9 9 N 1.36934 * 119.99360 * 17.35394 * 7 2 1 10 10 C 1.46920 * 120.63417 * 27.67171 * 9 7 2 11 11 C 1.53200 * 108.77555 * 126.43122 * 10 9 7 12 12 C 1.53042 * 109.31399 * 54.63626 * 11 10 9 13 13 C 1.53046 * 109.53438 * 298.63613 * 12 11 10 14 14 H 1.08998 * 109.49536 * 301.37709 * 13 12 11 15 15 N 1.46499 * 109.49725 * 181.31605 * 13 12 11 16 16 C 1.34778 * 120.00250 * 155.06230 * 15 13 12 17 17 O 1.21275 * 119.99664 * 359.97438 * 16 15 13 18 18 C 1.50695 * 119.99891 * 180.02562 * 16 15 13 19 19 H 1.09001 * 110.88899 * 56.48395 * 18 16 15 20 20 C 1.54378 * 110.82046 * 180.02562 * 18 16 15 21 21 C 1.51215 * 105.11949 * 91.93100 * 20 18 16 22 22 C 1.38748 * 130.69594 * 197.16198 * 21 20 18 23 23 C 1.38575 * 118.55720 * 179.97438 * 22 21 20 24 24 C 1.38224 * 118.99260 * 0.26218 * 23 22 21 25 25 N 1.31691 * 120.79950 * 359.45538 * 24 23 22 26 26 C 1.32297 * 122.03012 * 0.55961 * 25 24 23 27 27 C 1.51475 * 130.14114 * 179.70359 * 26 25 24 28 28 C 1.46939 * 120.60230 * 207.68923 * 9 7 2 29 29 H 0.96998 * 120.00147 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.59214 * 6.64558 * 10 9 7 31 31 H 1.08997 * 109.58847 * 246.21268 * 10 9 7 32 32 H 1.08999 * 109.49738 * 294.68372 * 11 10 9 33 33 H 1.09004 * 109.52303 * 174.60257 * 11 10 9 34 34 H 1.08997 * 109.45828 * 178.61564 * 12 11 10 35 35 H 1.09002 * 109.45798 * 58.65230 * 12 11 10 36 36 H 0.97008 * 120.00002 * 335.06690 * 15 13 12 37 37 H 1.09000 * 110.30849 * 333.01890 * 20 18 16 38 38 H 1.09004 * 110.39600 * 210.88917 * 20 18 16 39 39 H 1.07999 * 120.71591 * 359.95033 * 22 21 20 40 40 H 1.08005 * 120.49906 * 179.97438 * 23 22 21 41 41 H 1.07998 * 119.59904 * 179.70475 * 24 23 22 42 42 H 1.09005 * 110.29537 * 43.87729 * 27 26 25 43 43 H 1.09002 * 110.37367 * 281.79766 * 27 26 25 44 44 H 1.08995 * 109.55985 * 113.76294 * 28 9 7 45 45 H 1.09007 * 109.61301 * 353.33814 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0535 -1.2232 0.2795 9 7 1.3725 -2.3611 -0.3527 10 6 0.2278 -2.3350 -1.2734 11 6 0.5003 -3.3060 -2.4266 12 6 0.8180 -4.6909 -1.8578 13 6 2.0739 -4.6107 -0.9868 14 1 2.9078 -4.2419 -1.5840 15 7 2.3952 -5.9426 -0.4683 16 6 3.6619 -6.2423 -0.1189 17 8 4.5359 -5.4094 -0.2343 18 6 3.9925 -7.6126 0.4139 19 1 3.6927 -8.3869 -0.2923 20 6 5.4960 -7.7243 0.7459 21 6 5.6081 -7.3354 2.2029 22 6 6.7093 -6.9513 2.9545 23 6 6.5233 -6.6443 4.2930 24 6 5.2535 -6.7365 4.8313 25 7 4.2300 -7.0995 4.0863 26 6 4.3664 -7.4005 2.8053 27 6 3.3318 -7.8401 1.7900 28 6 1.8200 -3.6543 0.1826 29 1 -0.4850 0.8400 -0.0004 30 1 0.0987 -1.3269 -1.6674 31 1 -0.6743 -2.6409 -0.7437 32 1 1.3490 -2.9490 -3.0100 33 1 -0.3803 -3.3686 -3.0659 34 1 0.9881 -5.3895 -2.6770 35 1 -0.0211 -5.0367 -1.2541 36 1 1.6962 -6.6090 -0.3765 37 1 6.0724 -7.0379 0.1256 38 1 5.8424 -8.7474 0.5995 39 1 7.6901 -6.8932 2.5062 40 1 7.3586 -6.3422 4.9073 41 1 5.0982 -6.5042 5.8745 42 1 2.4307 -7.2336 1.8816 43 1 3.0922 -8.8949 1.9246 44 1 1.0479 -4.0675 0.8316 45 1 2.7412 -3.5169 0.7488 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009327715.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:23 Heat of formation + Delta-G solvation = -8.322679 kcal Electronic energy + Delta-G solvation = -26498.298657 eV Core-core repulsion = 22900.622268 eV Total energy + Delta-G solvation = -3597.676389 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.00084 -40.67958 -39.05796 -36.85892 -35.94078 -34.17494 -33.55552 -32.36954 -31.11357 -29.78144 -28.74788 -27.29393 -25.45666 -23.92491 -23.67951 -22.82893 -22.52147 -21.24656 -20.56299 -18.76432 -18.37329 -17.68490 -17.17635 -17.05280 -16.75722 -16.24313 -15.97452 -15.77364 -15.55188 -15.16675 -14.93832 -14.72539 -14.26535 -14.24818 -14.05636 -13.81777 -13.72181 -13.42401 -13.11287 -13.05626 -12.79749 -12.78092 -12.57906 -12.50224 -12.27738 -12.14628 -12.00657 -11.76395 -11.57938 -11.32920 -10.79821 -10.67562 -10.64412 -10.28030 -10.09883 -9.64752 -8.73286 -7.94287 -5.40130 0.15077 0.34173 1.40958 1.41998 1.51643 1.64841 2.16634 2.47608 2.79219 3.01334 3.19139 3.45939 3.60008 3.68147 3.82059 3.92826 3.95941 4.05015 4.10693 4.22134 4.24803 4.38204 4.43576 4.48759 4.56260 4.61161 4.74455 4.78050 4.82978 4.89157 4.90664 4.99859 5.00843 5.04179 5.12192 5.16976 5.20957 5.27081 5.30649 5.46033 5.57383 5.59720 5.74327 5.79245 6.32791 6.64244 7.03181 7.09136 7.34868 7.78633 8.28254 9.11114 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013871 B = 0.003758 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.131214 B = 7449.805209 C = 8649.710676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.041 4.041 3 Si 0.965 3.035 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.271 4.271 8 H 0.048 0.952 9 N -0.608 5.608 10 C 0.171 3.829 11 C -0.130 4.130 12 C -0.103 4.103 13 C 0.143 3.857 14 H 0.056 0.944 15 N -0.707 5.707 16 C 0.510 3.490 17 O -0.585 6.585 18 C -0.096 4.096 19 H 0.167 0.833 20 C -0.063 4.063 21 C -0.155 4.155 22 C -0.079 4.079 23 C -0.173 4.173 24 C 0.080 3.920 25 N -0.513 5.513 26 C 0.086 3.914 27 C -0.056 4.056 28 C 0.147 3.853 29 H 0.253 0.747 30 H 0.054 0.946 31 H 0.004 0.996 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.417 0.583 37 H 0.077 0.923 38 H 0.127 0.873 39 H 0.152 0.848 40 H 0.165 0.835 41 H 0.176 0.824 42 H 0.080 0.920 43 H 0.136 0.864 44 H 0.016 0.984 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.815 -22.626 0.552 23.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.238 4.238 3 Si 0.793 3.207 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.401 4.401 8 H 0.066 0.934 9 N -0.332 5.332 10 C 0.046 3.954 11 C -0.170 4.170 12 C -0.141 4.141 13 C 0.036 3.964 14 H 0.074 0.926 15 N -0.359 5.359 16 C 0.297 3.703 17 O -0.464 6.464 18 C -0.118 4.118 19 H 0.184 0.816 20 C -0.100 4.100 21 C -0.157 4.157 22 C -0.105 4.105 23 C -0.193 4.193 24 C -0.077 4.077 25 N -0.222 5.222 26 C -0.051 4.051 27 C -0.094 4.094 28 C 0.020 3.980 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.022 0.978 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.255 0.745 37 H 0.095 0.905 38 H 0.145 0.855 39 H 0.169 0.831 40 H 0.183 0.817 41 H 0.193 0.807 42 H 0.099 0.901 43 H 0.154 0.846 44 H 0.034 0.966 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 7.489 -21.940 0.872 23.200 hybrid contribution 0.924 1.484 0.254 1.767 sum 8.413 -20.456 1.127 22.148 Atomic orbital electron populations 1.70168 1.06333 1.26078 1.54737 1.25710 0.96135 1.01156 1.00751 0.85311 0.77901 0.79585 0.77923 1.20535 1.21241 1.20302 1.19361 0.92440 0.86527 1.41769 0.93400 1.44236 1.36100 1.01457 1.51363 1.20732 0.87368 0.98278 0.88983 1.22022 1.01416 0.95384 0.98151 1.21607 0.95742 0.97598 0.99139 1.21190 0.97982 0.82264 0.94927 0.92604 1.45886 1.09963 1.14635 1.65382 1.21200 0.82112 0.90557 0.76384 1.90710 1.48594 1.51828 1.55311 1.22122 0.97119 0.94220 0.98301 0.81554 1.20949 0.95039 1.03879 0.90165 1.21788 0.94970 1.00326 0.98595 1.21464 0.99516 0.95459 0.94012 1.22415 0.99591 1.01179 0.96094 1.23084 0.88340 0.95744 1.00540 1.66825 1.36072 1.12347 1.06945 1.22313 0.95855 0.96044 0.90930 1.21046 0.95647 1.04629 0.88093 1.21182 0.95755 0.86781 0.94243 0.93755 0.92708 0.97768 0.93458 0.89550 0.88974 0.90593 0.74542 0.90461 0.85538 0.83064 0.81711 0.80698 0.90099 0.84613 0.96567 0.96261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.19 11.19 21.65 0.24 -55.95 16 2 C -0.04 -2.43 4.91 84.86 0.42 -2.02 16 3 Si 0.97 47.30 29.59 68.60 2.03 49.33 16 4 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 7 C -0.27 -16.29 9.58 84.03 0.81 -15.48 16 8 H 0.05 2.97 7.89 -2.92 -0.02 2.95 16 9 N -0.61 -32.78 3.00 -699.08 -2.09 -34.87 16 10 C 0.17 8.36 5.31 86.37 0.46 8.82 16 11 C -0.13 -4.69 6.08 30.68 0.19 -4.50 16 12 C -0.10 -3.00 5.36 30.62 0.16 -2.83 16 13 C 0.14 5.08 2.60 45.07 0.12 5.20 16 14 H 0.06 2.35 7.58 -2.39 -0.02 2.33 16 15 N -0.71 -18.47 4.96 -442.18 -2.19 -20.66 16 16 C 0.51 14.46 7.05 87.66 0.62 15.08 16 17 O -0.58 -23.33 15.19 -3.01 -0.05 -23.38 16 18 C -0.10 -1.65 3.47 -10.62 -0.04 -1.68 16 19 H 0.17 1.20 8.14 -2.39 -0.02 1.18 16 20 C -0.06 -1.17 6.08 30.48 0.19 -0.98 16 21 C -0.15 -3.71 6.16 -19.59 -0.12 -3.83 16 22 C -0.08 -1.73 10.17 22.47 0.23 -1.50 16 23 C -0.17 -3.56 10.12 22.35 0.23 -3.33 16 24 C 0.08 1.91 11.18 84.71 0.95 2.85 16 25 N -0.51 -14.87 10.35 -182.98 -1.89 -16.76 16 26 C 0.09 2.24 7.32 42.72 0.31 2.55 16 27 C -0.06 -1.02 6.30 30.55 0.19 -0.83 16 28 C 0.15 6.86 6.09 86.36 0.53 7.38 16 29 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 30 H 0.05 3.03 6.04 -2.39 -0.01 3.01 16 31 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.42 7.25 8.60 -92.70 -0.80 6.45 16 37 H 0.08 1.80 7.03 -2.39 -0.02 1.79 16 38 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 41 H 0.18 3.16 8.06 -2.91 -0.02 3.13 16 42 H 0.08 1.65 7.80 -2.38 -0.02 1.64 16 43 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.02 0.99 7.93 -2.38 -0.02 0.98 16 Total: -1.00 -82.95 362.00 1.47 -81.48 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.20 Total: 15.91 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 5.23 Total: 4.89 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -5.94 Total: -128.24 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.05 Total: -23.38 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -82.95 1.47 -81.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009327715.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.161 kcal (2) G-P(sol) polarization free energy of solvation -82.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds