Wall clock time and date at job start Tue Mar 31 2020 11:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99720 * 2 1 4 4 H 1.48503 * 109.47169 * 272.79330 * 3 2 1 5 5 H 1.48491 * 109.47537 * 32.79568 * 3 2 1 6 6 H 1.48507 * 109.47041 * 152.79717 * 3 2 1 7 7 C 1.38805 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00518 * 339.37489 * 7 2 1 9 9 N 1.36937 * 120.00271 * 159.37000 * 7 2 1 10 10 C 1.46923 * 120.63405 * 152.37916 * 9 7 2 11 11 C 1.53183 * 108.77857 * 126.66965 * 10 9 7 12 12 C 1.53042 * 109.31239 * 54.63718 * 11 10 9 13 13 C 1.53035 * 109.53810 * 298.63427 * 12 11 10 14 14 H 1.09004 * 109.52944 * 301.39722 * 13 12 11 15 15 N 1.46499 * 109.50000 * 181.31716 * 13 12 11 16 16 C 1.34777 * 120.00239 * 155.16675 * 15 13 12 17 17 O 1.21286 * 119.99967 * 359.97438 * 16 15 13 18 18 C 1.50697 * 119.99897 * 180.02562 * 16 15 13 19 19 H 1.08993 * 110.73202 * 303.40194 * 18 16 15 20 20 C 1.54377 * 110.82149 * 179.97438 * 18 16 15 21 21 C 1.51225 * 105.11784 * 268.07075 * 20 18 16 22 22 C 1.38739 * 130.69050 * 162.86810 * 21 20 18 23 23 C 1.38577 * 118.55745 * 180.02562 * 22 21 20 24 24 C 1.38225 * 118.98957 * 359.97438 * 23 22 21 25 25 N 1.31691 * 120.80328 * 359.97438 * 24 23 22 26 26 C 1.32301 * 122.02727 * 0.02562 * 25 24 23 27 27 C 1.51476 * 130.13955 * 180.02562 * 26 25 24 28 28 C 1.46923 * 120.62779 * 332.66530 * 9 7 2 29 29 H 0.96998 * 120.00287 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.59186 * 246.46421 * 10 9 7 31 31 H 1.09009 * 109.58318 * 6.87981 * 10 9 7 32 32 H 1.09008 * 109.49752 * 294.68520 * 11 10 9 33 33 H 1.09005 * 109.50336 * 174.58818 * 11 10 9 34 34 H 1.09006 * 109.45705 * 178.61819 * 12 11 10 35 35 H 1.09000 * 109.45053 * 58.65386 * 12 11 10 36 36 H 0.96997 * 119.99614 * 335.15978 * 15 13 12 37 37 H 1.09000 * 110.31364 * 26.97710 * 20 18 16 38 38 H 1.08994 * 110.31219 * 149.15911 * 20 18 16 39 39 H 1.08000 * 120.72268 * 0.02562 * 22 21 20 40 40 H 1.07997 * 120.50788 * 179.97438 * 23 22 21 41 41 H 1.08004 * 119.60360 * 180.02562 * 24 23 22 42 42 H 1.09002 * 110.29588 * 78.24803 * 27 26 25 43 43 H 1.08996 * 110.29598 * 316.10998 * 27 26 25 44 44 H 1.08997 * 109.59160 * 353.11321 * 28 9 7 45 45 H 1.09004 * 109.59231 * 113.54640 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4385 2.0806 -1.3984 5 1 1.4784 2.6349 0.7583 6 1 3.5761 1.4239 0.6401 7 6 2.0102 -1.2021 0.0005 8 1 1.5222 -2.1074 0.3304 9 7 3.3137 -1.2403 -0.4173 10 6 4.2363 -2.2598 0.1006 11 6 4.8825 -2.9868 -1.0827 12 6 5.5366 -1.9608 -2.0111 13 6 4.4690 -1.0082 -2.5541 14 1 3.7096 -1.5787 -3.0890 15 7 5.0910 -0.0460 -3.4671 16 6 4.3534 0.5453 -4.4277 17 8 3.1748 0.2805 -4.5366 18 6 4.9934 1.5346 -5.3673 19 1 5.4584 2.3490 -4.8118 20 6 3.9610 2.0785 -6.3780 21 6 4.0601 1.1605 -7.5756 22 6 3.1881 0.9594 -8.6358 23 6 3.5345 0.0403 -9.6133 24 6 4.7319 -0.6406 -9.4984 25 7 5.5360 -0.4234 -8.4784 26 6 5.2413 0.4455 -7.5252 27 6 6.0194 0.8367 -6.2858 28 6 3.8180 -0.2587 -1.3873 29 1 -0.4850 0.8400 -0.0004 30 1 5.0094 -1.7814 0.7020 31 1 3.6852 -2.9746 0.7119 32 1 4.1194 -3.5392 -1.6311 33 1 5.6398 -3.6792 -0.7149 34 1 6.0183 -2.4774 -2.8413 35 1 6.2822 -1.3920 -1.4556 36 1 6.0336 0.1655 -3.3802 37 1 2.9581 2.0389 -5.9529 38 1 4.2121 3.1003 -6.6625 39 1 2.2594 1.5073 -8.6979 40 1 2.8789 -0.1413 -10.4521 41 1 5.0120 -1.3589 -10.2548 42 1 6.8244 1.5240 -6.5461 43 1 6.4218 -0.0502 -5.7964 44 1 2.9910 0.3468 -1.7579 45 1 4.5571 0.3829 -0.9074 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009327718.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:28 Heat of formation + Delta-G solvation = 21.612768 kcal Electronic energy + Delta-G solvation = -26735.999311 eV Core-core repulsion = 23139.621021 eV Total energy + Delta-G solvation = -3596.378291 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.10599 -39.54012 -37.74945 -35.89214 -34.31935 -32.82597 -32.64140 -30.70453 -30.15747 -28.80393 -27.95438 -25.28217 -24.51739 -22.83919 -22.17594 -22.01047 -21.26629 -20.01134 -19.29939 -17.38914 -16.84604 -16.81580 -16.25983 -15.89522 -15.58238 -14.98231 -14.82908 -14.42675 -14.14464 -13.80058 -13.70034 -13.48390 -13.20217 -13.05522 -12.93825 -12.77319 -12.40538 -12.29145 -12.11398 -11.96026 -11.73324 -11.55617 -11.46302 -11.06884 -10.74606 -10.60387 -10.24205 -10.16853 -9.84702 -9.75595 -9.59576 -9.45945 -9.39072 -8.89940 -8.80645 -8.48373 -6.95035 -5.91291 -3.27586 0.95999 1.16686 2.82190 3.29547 3.38248 3.48592 3.51784 3.61075 3.76663 4.25612 4.46067 4.57253 4.68300 4.71093 4.80690 4.99845 5.05125 5.10527 5.14459 5.26742 5.27564 5.33505 5.44900 5.49407 5.50233 5.58588 5.63525 5.72270 5.83698 5.88109 5.96843 6.00713 6.04498 6.14238 6.21535 6.27294 6.44972 6.55792 6.57879 6.64576 6.65595 6.81509 6.95159 7.73224 7.84638 7.99360 8.36676 8.48050 8.96627 9.75642 10.11590 11.24654 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016295 B = 0.003961 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.868323 B = 7067.370937 C = 7809.763318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.028 3.972 3 Si 0.881 3.119 4 H -0.287 1.287 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.264 4.264 8 H 0.087 0.913 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.133 4.133 12 C -0.116 4.116 13 C 0.126 3.874 14 H 0.090 0.910 15 N -0.724 5.724 16 C 0.514 3.486 17 O -0.521 6.521 18 C -0.113 4.113 19 H 0.117 0.883 20 C -0.069 4.069 21 C -0.132 4.132 22 C -0.063 4.063 23 C -0.173 4.173 24 C 0.097 3.903 25 N -0.480 5.480 26 C 0.114 3.886 27 C -0.058 4.058 28 C 0.121 3.879 29 H 0.262 0.738 30 H 0.023 0.977 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.394 0.606 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.156 0.844 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.778 2.660 -15.873 21.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.171 4.171 3 Si 0.711 3.289 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.197 1.197 7 C -0.392 4.392 8 H 0.104 0.896 9 N -0.325 5.325 10 C 0.019 3.981 11 C -0.172 4.172 12 C -0.154 4.154 13 C 0.020 3.980 14 H 0.108 0.892 15 N -0.375 5.375 16 C 0.298 3.702 17 O -0.396 6.396 18 C -0.135 4.135 19 H 0.135 0.865 20 C -0.107 4.107 21 C -0.134 4.134 22 C -0.088 4.088 23 C -0.193 4.193 24 C -0.061 4.061 25 N -0.188 5.188 26 C -0.024 4.024 27 C -0.096 4.096 28 C -0.006 4.006 29 H 0.072 0.928 30 H 0.041 0.959 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.228 0.772 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.151 0.849 40 H 0.154 0.846 41 H 0.173 0.827 42 H 0.118 0.882 43 H 0.108 0.892 44 H 0.097 0.903 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 14.504 2.064 -15.864 21.594 hybrid contribution 0.008 1.520 -0.142 1.527 sum 14.512 3.584 -16.006 21.901 Atomic orbital electron populations 1.69833 1.05731 1.26541 1.52608 1.25254 0.95187 0.97553 0.99123 0.86958 0.79952 0.84954 0.76997 1.21476 1.23138 1.19706 1.18899 0.85005 0.94811 1.40470 0.89586 1.44290 1.08736 1.33788 1.45726 1.20986 0.92416 0.91398 0.93257 1.21999 0.99612 0.97394 0.98211 1.21678 0.97396 0.97382 0.98971 1.21757 0.95361 0.89996 0.90845 0.89195 1.46086 1.13002 1.45234 1.33206 1.20268 0.87150 0.81769 0.80977 1.90769 1.15575 1.61993 1.71259 1.22074 0.97161 0.98294 0.95925 0.86519 1.20912 1.01525 0.97257 0.90982 1.21409 0.95959 0.99216 0.96830 1.21086 0.98689 0.96629 0.92443 1.22062 0.98726 0.98201 1.00284 1.22585 0.90660 0.97894 0.94924 1.66814 1.34134 1.16073 1.01792 1.21740 0.93770 0.92162 0.94713 1.20922 0.96630 1.01269 0.90765 1.21679 0.97662 0.92330 0.88896 0.92770 0.95921 0.91661 0.91686 0.92134 0.92462 0.92082 0.77223 0.88126 0.89107 0.84882 0.84591 0.82670 0.88203 0.89184 0.90347 0.95883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.74 13.97 55.49 0.78 -27.97 16 2 C 0.03 0.85 5.23 -17.43 -0.09 0.76 16 3 Si 0.88 23.28 24.34 -169.99 -4.14 19.14 16 4 H -0.29 -7.55 6.62 56.52 0.37 -7.18 16 5 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 6 H -0.27 -6.94 6.64 56.52 0.38 -6.57 16 7 C -0.26 -7.62 10.03 -15.06 -0.15 -7.77 16 8 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 9 N -0.60 -14.65 2.77 -172.32 -0.48 -15.13 16 10 C 0.15 2.83 6.51 -3.72 -0.02 2.81 16 11 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16 12 C -0.12 -1.72 5.35 -26.69 -0.14 -1.86 16 13 C 0.13 2.31 2.60 -67.81 -0.18 2.14 16 14 H 0.09 1.95 7.58 -51.93 -0.39 1.56 16 15 N -0.72 -10.78 4.96 -53.69 -0.27 -11.05 16 16 C 0.51 8.37 7.05 -10.99 -0.08 8.29 16 17 O -0.52 -11.25 15.19 5.55 0.08 -11.17 16 18 C -0.11 -1.28 3.47 -90.32 -0.31 -1.59 16 19 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 20 C -0.07 -0.81 6.08 -26.90 -0.16 -0.97 16 21 C -0.13 -1.67 6.16 -104.21 -0.64 -2.32 16 22 C -0.06 -0.71 10.17 -39.27 -0.40 -1.11 16 23 C -0.17 -1.75 10.12 -39.46 -0.40 -2.15 16 24 C 0.10 1.07 11.18 -17.62 -0.20 0.87 16 25 N -0.48 -6.42 10.35 -9.19 -0.10 -6.52 16 26 C 0.11 1.47 7.32 -82.03 -0.60 0.87 16 27 C -0.06 -0.58 6.30 -26.77 -0.17 -0.75 16 28 C 0.12 2.74 3.77 -3.71 -0.01 2.73 16 29 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 1.27 7.93 -51.92 -0.41 0.85 16 32 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.39 4.26 8.60 -40.82 -0.35 3.91 16 37 H 0.10 1.43 7.03 -51.93 -0.37 1.06 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 40 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 41 H 0.16 1.23 8.06 -52.48 -0.42 0.80 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 0.90 7.81 -51.93 -0.41 0.50 16 44 H 0.08 2.07 4.51 -51.93 -0.23 1.84 16 45 H 0.02 0.51 7.06 -51.93 -0.37 0.14 16 LS Contribution 355.59 15.07 5.36 5.36 Total: -1.00 -36.97 355.59 -9.27 -46.24 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.79 Total: 3.42 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -3.72 Total: -2.34 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: -0.06 Total: -60.66 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -4.14 Total: 19.14 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.97 -9.27 -46.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009327718.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.857 kcal (2) G-P(sol) polarization free energy of solvation -36.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds