Wall clock time and date at job start Tue Mar 31 2020 11:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99720 * 2 1 4 4 H 1.48503 * 109.47169 * 272.79330 * 3 2 1 5 5 H 1.48491 * 109.47537 * 32.79568 * 3 2 1 6 6 H 1.48507 * 109.47041 * 152.79717 * 3 2 1 7 7 C 1.38805 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00518 * 339.37489 * 7 2 1 9 9 N 1.36937 * 120.00271 * 159.37000 * 7 2 1 10 10 C 1.46923 * 120.63405 * 152.37916 * 9 7 2 11 11 C 1.53183 * 108.77857 * 126.66965 * 10 9 7 12 12 C 1.53042 * 109.31239 * 54.63718 * 11 10 9 13 13 C 1.53035 * 109.53810 * 298.63427 * 12 11 10 14 14 H 1.09004 * 109.52944 * 301.39722 * 13 12 11 15 15 N 1.46499 * 109.50000 * 181.31716 * 13 12 11 16 16 C 1.34777 * 120.00239 * 155.16675 * 15 13 12 17 17 O 1.21286 * 119.99967 * 359.97438 * 16 15 13 18 18 C 1.50697 * 119.99897 * 180.02562 * 16 15 13 19 19 H 1.08993 * 110.73202 * 303.40194 * 18 16 15 20 20 C 1.54377 * 110.82149 * 179.97438 * 18 16 15 21 21 C 1.51225 * 105.11784 * 268.07075 * 20 18 16 22 22 C 1.38739 * 130.69050 * 162.86810 * 21 20 18 23 23 C 1.38577 * 118.55745 * 180.02562 * 22 21 20 24 24 C 1.38225 * 118.98957 * 359.97438 * 23 22 21 25 25 N 1.31691 * 120.80328 * 359.97438 * 24 23 22 26 26 C 1.32301 * 122.02727 * 0.02562 * 25 24 23 27 27 C 1.51476 * 130.13955 * 180.02562 * 26 25 24 28 28 C 1.46923 * 120.62779 * 332.66530 * 9 7 2 29 29 H 0.96998 * 120.00287 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.59186 * 246.46421 * 10 9 7 31 31 H 1.09009 * 109.58318 * 6.87981 * 10 9 7 32 32 H 1.09008 * 109.49752 * 294.68520 * 11 10 9 33 33 H 1.09005 * 109.50336 * 174.58818 * 11 10 9 34 34 H 1.09006 * 109.45705 * 178.61819 * 12 11 10 35 35 H 1.09000 * 109.45053 * 58.65386 * 12 11 10 36 36 H 0.96997 * 119.99614 * 335.15978 * 15 13 12 37 37 H 1.09000 * 110.31364 * 26.97710 * 20 18 16 38 38 H 1.08994 * 110.31219 * 149.15911 * 20 18 16 39 39 H 1.08000 * 120.72268 * 0.02562 * 22 21 20 40 40 H 1.07997 * 120.50788 * 179.97438 * 23 22 21 41 41 H 1.08004 * 119.60360 * 180.02562 * 24 23 22 42 42 H 1.09002 * 110.29588 * 78.24803 * 27 26 25 43 43 H 1.08996 * 110.29598 * 316.10998 * 27 26 25 44 44 H 1.08997 * 109.59160 * 353.11321 * 28 9 7 45 45 H 1.09004 * 109.59231 * 113.54640 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4385 2.0806 -1.3984 5 1 1.4784 2.6349 0.7583 6 1 3.5761 1.4239 0.6401 7 6 2.0102 -1.2021 0.0005 8 1 1.5222 -2.1074 0.3304 9 7 3.3137 -1.2403 -0.4173 10 6 4.2363 -2.2598 0.1006 11 6 4.8825 -2.9868 -1.0827 12 6 5.5366 -1.9608 -2.0111 13 6 4.4690 -1.0082 -2.5541 14 1 3.7096 -1.5787 -3.0890 15 7 5.0910 -0.0460 -3.4671 16 6 4.3534 0.5453 -4.4277 17 8 3.1748 0.2805 -4.5366 18 6 4.9934 1.5346 -5.3673 19 1 5.4584 2.3490 -4.8118 20 6 3.9610 2.0785 -6.3780 21 6 4.0601 1.1605 -7.5756 22 6 3.1881 0.9594 -8.6358 23 6 3.5345 0.0403 -9.6133 24 6 4.7319 -0.6406 -9.4984 25 7 5.5360 -0.4234 -8.4784 26 6 5.2413 0.4455 -7.5252 27 6 6.0194 0.8367 -6.2858 28 6 3.8180 -0.2587 -1.3873 29 1 -0.4850 0.8400 -0.0004 30 1 5.0094 -1.7814 0.7020 31 1 3.6852 -2.9746 0.7119 32 1 4.1194 -3.5392 -1.6311 33 1 5.6398 -3.6792 -0.7149 34 1 6.0183 -2.4774 -2.8413 35 1 6.2822 -1.3920 -1.4556 36 1 6.0336 0.1655 -3.3802 37 1 2.9581 2.0389 -5.9529 38 1 4.2121 3.1003 -6.6625 39 1 2.2594 1.5073 -8.6979 40 1 2.8789 -0.1413 -10.4521 41 1 5.0120 -1.3589 -10.2548 42 1 6.8244 1.5240 -6.5461 43 1 6.4218 -0.0502 -5.7964 44 1 2.9910 0.3468 -1.7579 45 1 4.5571 0.3829 -0.9074 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009327718.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:26 Heat of formation + Delta-G solvation = -5.521897 kcal Electronic energy + Delta-G solvation = -26737.175959 eV Core-core repulsion = 23139.621021 eV Total energy + Delta-G solvation = -3597.554938 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.04852 -40.76722 -39.24069 -36.89595 -35.92413 -34.50347 -33.59817 -32.61344 -31.34172 -29.99723 -28.78724 -27.22337 -25.59841 -24.32604 -23.55604 -22.84054 -22.53242 -21.42411 -20.60602 -18.87848 -18.47502 -17.77754 -17.47750 -17.09565 -16.96405 -16.25923 -15.95264 -15.80557 -15.61431 -15.45446 -14.99133 -14.79467 -14.52615 -14.29907 -14.09207 -13.95799 -13.82011 -13.70546 -13.44064 -13.14324 -12.84964 -12.66774 -12.60075 -12.48574 -12.45137 -12.32430 -11.81329 -11.70944 -11.66605 -11.36964 -10.86391 -10.81196 -10.69959 -10.31138 -10.16757 -9.67179 -8.95105 -8.22538 -5.53804 0.12927 0.30735 1.24509 1.30662 1.41251 1.59249 2.09736 2.37379 2.76868 2.96475 3.01951 3.35456 3.42069 3.57817 3.76137 3.84623 3.90181 4.02522 4.03518 4.14157 4.19269 4.32556 4.35172 4.38512 4.45268 4.58486 4.66495 4.70212 4.76927 4.79013 4.84188 4.88678 4.93025 4.99784 5.01867 5.09219 5.13466 5.19116 5.21669 5.28705 5.43452 5.54412 5.76263 5.82785 6.07510 6.57912 6.87420 6.99421 7.30557 7.58348 7.97115 8.97511 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016295 B = 0.003961 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.868323 B = 7067.370937 C = 7809.763318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.036 4.036 3 Si 0.950 3.050 4 H -0.291 1.291 5 H -0.307 1.307 6 H -0.249 1.249 7 C -0.252 4.252 8 H 0.052 0.948 9 N -0.619 5.619 10 C 0.137 3.863 11 C -0.126 4.126 12 C -0.106 4.106 13 C 0.136 3.864 14 H 0.045 0.955 15 N -0.709 5.709 16 C 0.505 3.495 17 O -0.586 6.586 18 C -0.102 4.102 19 H 0.158 0.842 20 C -0.069 4.069 21 C -0.156 4.156 22 C -0.081 4.081 23 C -0.172 4.172 24 C 0.085 3.915 25 N -0.505 5.505 26 C 0.091 3.909 27 C -0.049 4.049 28 C 0.121 3.879 29 H 0.260 0.740 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.420 0.580 37 H 0.066 0.934 38 H 0.123 0.877 39 H 0.144 0.856 40 H 0.166 0.834 41 H 0.183 0.817 42 H 0.136 0.864 43 H 0.092 0.908 44 H 0.034 0.966 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.297 3.390 -16.835 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.231 4.231 3 Si 0.779 3.221 4 H -0.218 1.218 5 H -0.236 1.236 6 H -0.173 1.173 7 C -0.382 4.382 8 H 0.070 0.930 9 N -0.344 5.344 10 C 0.013 3.987 11 C -0.165 4.165 12 C -0.144 4.144 13 C 0.029 3.971 14 H 0.064 0.936 15 N -0.361 5.361 16 C 0.292 3.708 17 O -0.465 6.465 18 C -0.123 4.123 19 H 0.176 0.824 20 C -0.107 4.107 21 C -0.158 4.158 22 C -0.107 4.107 23 C -0.191 4.191 24 C -0.072 4.072 25 N -0.214 5.214 26 C -0.046 4.046 27 C -0.087 4.087 28 C -0.005 4.005 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.122 0.878 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.258 0.742 37 H 0.085 0.915 38 H 0.141 0.859 39 H 0.162 0.838 40 H 0.184 0.816 41 H 0.200 0.800 42 H 0.154 0.846 43 H 0.111 0.889 44 H 0.052 0.948 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 19.137 2.782 -16.823 25.631 hybrid contribution -1.461 1.151 0.089 1.862 sum 17.676 3.933 -16.734 24.656 Atomic orbital electron populations 1.69978 1.07519 1.27134 1.55661 1.25950 0.95873 1.01231 1.00064 0.85845 0.79345 0.80304 0.76610 1.21843 1.23555 1.17318 1.18890 0.87186 0.93512 1.38632 0.92998 1.44443 1.07924 1.35248 1.46785 1.21256 0.92031 0.90392 0.95024 1.21925 1.00003 0.97849 0.96703 1.21663 0.96348 0.96514 0.99871 1.21319 0.96006 0.90367 0.89380 0.93645 1.45882 1.14086 1.44136 1.32018 1.21278 0.86491 0.81740 0.81258 1.90754 1.18666 1.64103 1.72951 1.22146 0.97124 0.97881 0.95168 0.82429 1.20951 0.99967 0.99004 0.90765 1.21685 0.96588 0.99977 0.97541 1.21451 0.99189 0.97279 0.92788 1.22413 0.98838 0.97173 1.00670 1.23148 0.90764 0.98269 0.95022 1.66860 1.35170 1.16699 1.02674 1.22232 0.94480 0.92225 0.95661 1.21001 0.96537 1.02013 0.89110 1.21644 0.96613 0.92229 0.90038 0.93089 0.93499 0.92694 0.93906 0.87819 0.89528 0.89083 0.74220 0.91509 0.85944 0.83786 0.81647 0.80009 0.84579 0.88907 0.94785 0.94083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -64.01 13.97 21.65 0.30 -63.71 16 2 C -0.04 -2.27 5.23 84.86 0.44 -1.83 16 3 Si 0.95 49.63 24.34 68.60 1.67 51.30 16 4 H -0.29 -15.20 6.62 99.48 0.66 -14.54 16 5 H -0.31 -16.01 7.11 99.48 0.71 -15.31 16 6 H -0.25 -11.92 6.64 99.48 0.66 -11.26 16 7 C -0.25 -15.17 10.03 84.03 0.84 -14.32 16 8 H 0.05 3.38 8.06 -2.91 -0.02 3.35 16 9 N -0.62 -30.17 2.77 -699.09 -1.94 -32.11 16 10 C 0.14 5.10 6.51 86.36 0.56 5.66 16 11 C -0.13 -3.61 6.08 30.67 0.19 -3.43 16 12 C -0.11 -2.70 5.35 30.62 0.16 -2.54 16 13 C 0.14 4.82 2.60 45.07 0.12 4.94 16 14 H 0.05 2.03 7.58 -2.38 -0.02 2.01 16 15 N -0.71 -19.40 4.96 -442.15 -2.20 -21.60 16 16 C 0.51 16.02 7.05 87.66 0.62 16.64 16 17 O -0.59 -26.36 15.19 -3.05 -0.05 -26.40 16 18 C -0.10 -2.04 3.47 -10.60 -0.04 -2.08 16 19 H 0.16 1.88 8.14 -2.39 -0.02 1.86 16 20 C -0.07 -1.56 6.08 30.48 0.19 -1.37 16 21 C -0.16 -3.85 6.16 -19.59 -0.12 -3.97 16 22 C -0.08 -1.82 10.17 22.47 0.23 -1.60 16 23 C -0.17 -3.25 10.12 22.35 0.23 -3.03 16 24 C 0.08 1.75 11.18 84.71 0.95 2.70 16 25 N -0.50 -12.84 10.35 -182.98 -1.89 -14.73 16 26 C 0.09 2.22 7.32 42.72 0.31 2.53 16 27 C -0.05 -0.83 6.30 30.57 0.19 -0.64 16 28 C 0.12 5.38 3.77 86.37 0.33 5.70 16 29 H 0.26 16.57 8.31 -92.71 -0.77 15.79 16 30 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.05 2.11 7.93 -2.38 -0.02 2.09 16 32 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.42 7.18 8.60 -92.71 -0.80 6.38 16 37 H 0.07 1.98 7.03 -2.39 -0.02 1.96 16 38 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 40 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 41 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 42 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.09 1.54 7.81 -2.39 -0.02 1.52 16 44 H 0.03 1.82 4.51 -2.39 -0.01 1.81 16 45 H 0.04 1.68 7.06 -2.39 -0.02 1.66 16 Total: -1.00 -88.71 355.59 1.20 -87.51 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.11 Total: 16.36 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 5.20 Total: 3.37 kcal Atomic # 7 Polarization: -126.42 SS G_CDS: -5.72 Total: -132.14 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.05 Total: -26.40 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 1.67 Total: 51.30 kcal Total: -88.71 1.20 -87.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009327718.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.987 kcal (2) G-P(sol) polarization free energy of solvation -88.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds