Wall clock time and date at job start Tue Mar 31 2020 11:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00099 * 2 1 4 4 H 1.48500 * 109.47268 * 239.99689 * 3 2 1 5 5 H 1.48500 * 109.46981 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47189 * 119.99570 * 3 2 1 7 7 C 1.38815 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99740 * 197.35026 * 7 2 1 9 9 N 1.36931 * 119.99895 * 17.35770 * 7 2 1 10 10 C 1.46932 * 120.62802 * 207.68075 * 9 7 2 11 11 C 1.53193 * 108.77512 * 233.60514 * 10 9 7 12 12 C 1.53039 * 109.31689 * 305.36902 * 11 10 9 13 13 C 1.53035 * 109.53701 * 61.36160 * 12 11 10 14 14 H 1.09003 * 109.50026 * 58.61968 * 13 12 11 15 15 N 1.46506 * 109.49786 * 178.68116 * 13 12 11 16 16 C 1.34772 * 120.00022 * 204.93379 * 15 13 12 17 17 O 1.21279 * 120.00176 * 0.02562 * 16 15 13 18 18 C 1.50707 * 119.99701 * 180.27863 * 16 15 13 19 19 H 1.09003 * 110.72775 * 297.77735 * 18 16 15 20 20 C 1.54365 * 110.82314 * 174.15093 * 18 16 15 21 21 C 1.51217 * 105.12088 * 215.48752 * 20 18 16 22 22 C 1.38740 * 130.69495 * 197.15320 * 21 20 18 23 23 C 1.38583 * 118.55893 * 179.97438 * 22 21 20 24 24 C 1.38232 * 118.98744 * 359.97438 * 23 22 21 25 25 N 1.31692 * 120.80076 * 359.97438 * 24 23 22 26 26 C 1.32295 * 122.03220 * 0.03531 * 25 24 23 27 27 C 1.51473 * 130.14056 * 179.97438 * 26 25 24 28 28 C 1.46937 * 120.60817 * 27.70530 * 9 7 2 29 29 H 0.96998 * 120.00137 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.58325 * 113.82514 * 10 9 7 31 31 H 1.09000 * 109.70466 * 353.46964 * 10 9 7 32 32 H 1.09002 * 109.49328 * 185.41063 * 11 10 9 33 33 H 1.09000 * 109.51854 * 65.34018 * 11 10 9 34 34 H 1.08998 * 109.45776 * 301.34593 * 12 11 10 35 35 H 1.09002 * 109.45998 * 181.38224 * 12 11 10 36 36 H 0.97000 * 119.99181 * 24.94134 * 15 13 12 37 37 H 1.09008 * 110.31064 * 334.39990 * 20 18 16 38 38 H 1.08999 * 110.31191 * 96.57302 * 20 18 16 39 39 H 1.07996 * 120.72591 * 0.02562 * 22 21 20 40 40 H 1.07993 * 120.50969 * 179.97438 * 23 22 21 41 41 H 1.07996 * 119.59698 * 180.02562 * 24 23 22 42 42 H 1.09003 * 110.29088 * 43.87558 * 27 26 25 43 43 H 1.08991 * 110.29767 * 281.74731 * 27 26 25 44 44 H 1.08997 * 109.61153 * 6.61791 * 28 9 7 45 45 H 1.09000 * 109.55934 * 246.19350 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0534 -1.2233 0.2795 9 7 1.3723 -2.3612 -0.3527 10 6 1.8193 -3.6546 0.1820 11 6 2.0745 -4.6102 -0.9878 12 6 0.8189 -4.6904 -1.8591 13 6 0.5009 -3.3054 -2.4272 14 1 1.3494 -2.9479 -3.0108 15 7 -0.6828 -3.3893 -3.2864 16 6 -0.8696 -2.4833 -4.2665 17 8 -0.0577 -1.5988 -4.4375 18 6 -2.0905 -2.5659 -5.1462 19 1 -2.0990 -3.5002 -5.7076 20 6 -2.1670 -1.3501 -6.0943 21 6 -3.6417 -1.0403 -6.2203 22 6 -4.3300 -0.2818 -7.1561 23 6 -5.7051 -0.1634 -7.0310 24 6 -6.3399 -0.8030 -5.9828 25 7 -5.6543 -1.5160 -5.1133 26 6 -4.3412 -1.6530 -5.1983 27 6 -3.3800 -2.4181 -4.3124 28 6 0.2281 -2.3344 -1.2742 29 1 -0.4850 0.8400 -0.0004 30 1 1.0469 -4.0687 0.8302 31 1 2.7394 -3.5191 0.7506 32 1 2.3139 -5.6013 -0.6024 33 1 2.9085 -4.2408 -1.5845 34 1 -0.0202 -5.0368 -1.2558 35 1 0.9896 -5.3886 -2.6786 36 1 -1.3320 -4.0969 -3.1496 37 1 -1.6372 -0.5004 -5.6635 38 1 -1.7489 -1.6032 -7.0686 39 1 -3.8058 0.2052 -7.9650 40 1 -6.2721 0.4197 -7.7415 41 1 -7.4112 -0.7178 -5.8762 42 1 -3.7887 -3.3990 -4.0697 43 1 -3.1770 -1.8562 -3.4008 44 1 0.0991 -1.3263 -1.6681 45 1 -0.6742 -2.6403 -0.7447 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009327720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:35 Heat of formation + Delta-G solvation = 14.499647 kcal Electronic energy + Delta-G solvation = -26404.364058 eV Core-core repulsion = 22807.677319 eV Total energy + Delta-G solvation = -3596.686739 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.97868 -39.44649 -37.45697 -35.84499 -34.14073 -32.80956 -32.61881 -30.23048 -29.86410 -28.51742 -27.84954 -25.25560 -24.43654 -22.34720 -22.05717 -21.95799 -21.15876 -19.75450 -19.17519 -17.17710 -16.83154 -16.65710 -16.44545 -15.65701 -15.03295 -14.90296 -14.81007 -14.22311 -13.99919 -13.64748 -13.51962 -13.26012 -13.10042 -12.96062 -12.87996 -12.56794 -12.32433 -12.29799 -11.98762 -11.72341 -11.45582 -11.32279 -11.00682 -10.74478 -10.69036 -10.47680 -10.25495 -9.99757 -9.92628 -9.85334 -9.52289 -9.42225 -9.35574 -8.80855 -8.54434 -8.41098 -6.64418 -5.74171 -3.17206 0.96821 1.15730 2.94130 3.42464 3.47330 3.49978 3.52158 3.64572 3.82165 4.35680 4.54706 4.55523 4.75776 4.79128 4.87431 5.03219 5.11375 5.25345 5.36653 5.41236 5.44567 5.55159 5.61324 5.62947 5.64902 5.68655 5.73023 5.89129 5.98284 6.08431 6.09538 6.13236 6.15355 6.33951 6.42490 6.50468 6.57118 6.70426 6.78009 6.94036 6.97035 7.30894 7.73309 7.83744 7.87862 7.92343 8.49247 8.62156 9.24576 9.88632 10.43319 11.33807 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.003726 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.672386 B = 7512.216743 C = 8679.285642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.008 3.992 3 Si 0.901 3.099 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.258 4.258 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.116 3.884 14 H 0.082 0.918 15 N -0.718 5.718 16 C 0.520 3.480 17 O -0.528 6.528 18 C -0.108 4.108 19 H 0.108 0.892 20 C -0.064 4.064 21 C -0.143 4.143 22 C -0.065 4.065 23 C -0.176 4.176 24 C 0.099 3.901 25 N -0.479 5.479 26 C 0.123 3.877 27 C -0.063 4.063 28 C 0.167 3.833 29 H 0.254 0.746 30 H 0.018 0.982 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.393 0.607 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.156 0.844 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.348 -7.778 -13.743 18.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.192 4.192 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.387 4.387 8 H 0.083 0.917 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.010 3.990 14 H 0.100 0.900 15 N -0.368 5.368 16 C 0.304 3.696 17 O -0.404 6.404 18 C -0.130 4.130 19 H 0.126 0.874 20 C -0.102 4.102 21 C -0.145 4.145 22 C -0.091 4.091 23 C -0.196 4.196 24 C -0.059 4.059 25 N -0.187 5.187 26 C -0.014 4.014 27 C -0.101 4.101 28 C 0.040 3.960 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.226 0.774 37 H 0.123 0.877 38 H 0.101 0.899 39 H 0.150 0.850 40 H 0.153 0.847 41 H 0.173 0.827 42 H 0.111 0.889 43 H 0.120 0.880 44 H 0.113 0.887 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -9.296 -7.380 -13.142 17.708 hybrid contribution 0.320 0.990 -0.694 1.250 sum -8.976 -6.390 -13.836 17.687 Atomic orbital electron populations 1.70003 1.05323 1.25651 1.53311 1.25013 0.95242 0.98431 1.00466 0.86386 0.79010 0.83386 0.78104 1.20878 1.21643 1.20888 1.19103 0.92717 0.84855 1.42040 0.91667 1.43957 1.36064 1.01602 1.49505 1.20953 0.97722 0.86880 0.92865 1.22002 0.96989 0.99320 0.98777 1.21671 0.98921 0.96041 0.98750 1.21994 0.87061 0.96894 0.93006 0.90018 1.46064 1.26284 1.31054 1.33377 1.20066 0.86839 0.81887 0.80789 1.90748 1.45461 1.33852 1.70297 1.21979 0.93253 1.00922 0.96824 0.87421 1.20863 0.90962 0.98500 0.99870 1.21518 0.97649 0.98672 0.96618 1.21066 0.93950 0.96245 0.97850 1.22052 0.95061 1.02055 1.00444 1.22617 0.99990 0.92939 0.90331 1.66843 1.07994 1.16729 1.27164 1.21770 0.89665 0.95668 0.94328 1.20940 0.90450 1.01005 0.97677 1.21088 0.88717 0.98918 0.87238 0.93615 0.96424 0.92651 0.92653 0.92146 0.92234 0.93120 0.77386 0.87672 0.89922 0.84958 0.84657 0.82664 0.88931 0.88045 0.88750 0.96502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 11.19 55.49 0.62 -26.26 16 2 C 0.01 0.22 4.91 -17.43 -0.09 0.13 16 3 Si 0.90 22.62 29.59 -169.99 -5.03 17.59 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.26 -7.25 9.59 -15.06 -0.14 -7.40 16 8 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 9 N -0.59 -14.92 3.00 -172.31 -0.52 -15.44 16 10 C 0.14 2.94 6.51 -3.71 -0.02 2.91 16 11 C -0.13 -2.19 6.08 -26.61 -0.16 -2.35 16 12 C -0.12 -1.81 5.35 -26.69 -0.14 -1.96 16 13 C 0.12 2.19 2.60 -67.81 -0.18 2.02 16 14 H 0.08 1.78 7.58 -51.93 -0.39 1.39 16 15 N -0.72 -11.02 5.02 -53.69 -0.27 -11.29 16 16 C 0.52 8.47 7.03 -10.98 -0.08 8.39 16 17 O -0.53 -11.17 15.23 5.56 0.08 -11.08 16 18 C -0.11 -1.30 3.46 -90.39 -0.31 -1.61 16 19 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 20 C -0.06 -0.80 6.06 -26.91 -0.16 -0.96 16 21 C -0.14 -1.76 6.16 -104.21 -0.64 -2.40 16 22 C -0.07 -0.68 10.17 -39.27 -0.40 -1.08 16 23 C -0.18 -1.65 10.12 -39.46 -0.40 -2.05 16 24 C 0.10 1.06 11.18 -17.61 -0.20 0.86 16 25 N -0.48 -6.52 10.35 -9.19 -0.10 -6.61 16 26 C 0.12 1.65 7.32 -82.04 -0.60 1.05 16 27 C -0.06 -0.77 6.25 -26.84 -0.17 -0.94 16 28 C 0.17 4.03 4.88 -3.71 -0.02 4.01 16 29 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.02 0.37 8.14 -51.92 -0.42 -0.06 16 31 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.39 4.64 8.59 -40.82 -0.35 4.29 16 37 H 0.11 1.57 7.07 -51.92 -0.37 1.21 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.10 1.45 7.88 -51.93 -0.41 1.04 16 44 H 0.09 2.69 6.04 -51.93 -0.31 2.37 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 362.13 15.07 5.46 5.46 Total: -1.00 -34.33 362.13 -10.33 -44.66 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.87 Total: 4.33 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -3.71 Total: -1.37 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.26 Total: -59.59 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.03 Total: 17.59 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.33 -10.33 -44.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009327720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.159 kcal (2) G-P(sol) polarization free energy of solvation -34.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds