Wall clock time and date at job start Tue Mar 31 2020 11:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00099 * 2 1 4 4 H 1.48500 * 109.47268 * 239.99689 * 3 2 1 5 5 H 1.48500 * 109.46981 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47189 * 119.99570 * 3 2 1 7 7 C 1.38815 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99740 * 197.35026 * 7 2 1 9 9 N 1.36931 * 119.99895 * 17.35770 * 7 2 1 10 10 C 1.46932 * 120.62802 * 207.68075 * 9 7 2 11 11 C 1.53193 * 108.77512 * 233.60514 * 10 9 7 12 12 C 1.53039 * 109.31689 * 305.36902 * 11 10 9 13 13 C 1.53035 * 109.53701 * 61.36160 * 12 11 10 14 14 H 1.09003 * 109.50026 * 58.61968 * 13 12 11 15 15 N 1.46506 * 109.49786 * 178.68116 * 13 12 11 16 16 C 1.34772 * 120.00022 * 204.93379 * 15 13 12 17 17 O 1.21279 * 120.00176 * 0.02562 * 16 15 13 18 18 C 1.50707 * 119.99701 * 180.27863 * 16 15 13 19 19 H 1.09003 * 110.72775 * 297.77735 * 18 16 15 20 20 C 1.54365 * 110.82314 * 174.15093 * 18 16 15 21 21 C 1.51217 * 105.12088 * 215.48752 * 20 18 16 22 22 C 1.38740 * 130.69495 * 197.15320 * 21 20 18 23 23 C 1.38583 * 118.55893 * 179.97438 * 22 21 20 24 24 C 1.38232 * 118.98744 * 359.97438 * 23 22 21 25 25 N 1.31692 * 120.80076 * 359.97438 * 24 23 22 26 26 C 1.32295 * 122.03220 * 0.03531 * 25 24 23 27 27 C 1.51473 * 130.14056 * 179.97438 * 26 25 24 28 28 C 1.46937 * 120.60817 * 27.70530 * 9 7 2 29 29 H 0.96998 * 120.00137 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.58325 * 113.82514 * 10 9 7 31 31 H 1.09000 * 109.70466 * 353.46964 * 10 9 7 32 32 H 1.09002 * 109.49328 * 185.41063 * 11 10 9 33 33 H 1.09000 * 109.51854 * 65.34018 * 11 10 9 34 34 H 1.08998 * 109.45776 * 301.34593 * 12 11 10 35 35 H 1.09002 * 109.45998 * 181.38224 * 12 11 10 36 36 H 0.97000 * 119.99181 * 24.94134 * 15 13 12 37 37 H 1.09008 * 110.31064 * 334.39990 * 20 18 16 38 38 H 1.08999 * 110.31191 * 96.57302 * 20 18 16 39 39 H 1.07996 * 120.72591 * 0.02562 * 22 21 20 40 40 H 1.07993 * 120.50969 * 179.97438 * 23 22 21 41 41 H 1.07996 * 119.59698 * 180.02562 * 24 23 22 42 42 H 1.09003 * 110.29088 * 43.87558 * 27 26 25 43 43 H 1.08991 * 110.29767 * 281.74731 * 27 26 25 44 44 H 1.08997 * 109.61153 * 6.61791 * 28 9 7 45 45 H 1.09000 * 109.55934 * 246.19350 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0534 -1.2233 0.2795 9 7 1.3723 -2.3612 -0.3527 10 6 1.8193 -3.6546 0.1820 11 6 2.0745 -4.6102 -0.9878 12 6 0.8189 -4.6904 -1.8591 13 6 0.5009 -3.3054 -2.4272 14 1 1.3494 -2.9479 -3.0108 15 7 -0.6828 -3.3893 -3.2864 16 6 -0.8696 -2.4833 -4.2665 17 8 -0.0577 -1.5988 -4.4375 18 6 -2.0905 -2.5659 -5.1462 19 1 -2.0990 -3.5002 -5.7076 20 6 -2.1670 -1.3501 -6.0943 21 6 -3.6417 -1.0403 -6.2203 22 6 -4.3300 -0.2818 -7.1561 23 6 -5.7051 -0.1634 -7.0310 24 6 -6.3399 -0.8030 -5.9828 25 7 -5.6543 -1.5160 -5.1133 26 6 -4.3412 -1.6530 -5.1983 27 6 -3.3800 -2.4181 -4.3124 28 6 0.2281 -2.3344 -1.2742 29 1 -0.4850 0.8400 -0.0004 30 1 1.0469 -4.0687 0.8302 31 1 2.7394 -3.5191 0.7506 32 1 2.3139 -5.6013 -0.6024 33 1 2.9085 -4.2408 -1.5845 34 1 -0.0202 -5.0368 -1.2558 35 1 0.9896 -5.3886 -2.6786 36 1 -1.3320 -4.0969 -3.1496 37 1 -1.6372 -0.5004 -5.6635 38 1 -1.7489 -1.6032 -7.0686 39 1 -3.8058 0.2052 -7.9650 40 1 -6.2721 0.4197 -7.7415 41 1 -7.4112 -0.7178 -5.8762 42 1 -3.7887 -3.3990 -4.0697 43 1 -3.1770 -1.8562 -3.4008 44 1 0.0991 -1.3263 -1.6681 45 1 -0.6742 -2.6403 -0.7447 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009327720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:34 Heat of formation + Delta-G solvation = -8.498977 kcal Electronic energy + Delta-G solvation = -26405.361353 eV Core-core repulsion = 22807.677319 eV Total energy + Delta-G solvation = -3597.684034 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.95198 -40.73981 -39.02497 -36.91787 -35.81297 -34.44442 -33.60213 -31.95451 -31.21052 -29.85231 -28.81346 -27.24579 -25.51762 -23.95333 -23.50889 -22.82066 -22.38949 -21.22826 -20.60883 -18.78034 -18.33296 -17.67275 -17.31398 -17.16198 -16.66043 -16.18502 -15.90920 -15.75449 -15.42381 -15.23861 -14.82360 -14.71478 -14.21464 -14.15031 -13.99050 -13.97823 -13.82451 -13.61286 -13.39299 -12.94178 -12.70343 -12.63905 -12.51621 -12.43278 -12.31076 -12.23253 -12.08112 -11.68441 -11.58362 -11.25728 -10.81297 -10.68692 -10.56593 -10.29142 -10.06744 -9.69191 -8.70012 -7.90763 -5.36121 0.11803 0.32234 1.38701 1.44557 1.49108 1.63084 2.18635 2.47899 2.78447 2.92004 3.25097 3.37587 3.63406 3.72461 3.87863 3.92700 3.99969 4.05582 4.15848 4.18738 4.20922 4.31231 4.40455 4.50116 4.59189 4.63594 4.66939 4.75899 4.79730 4.83103 4.93463 4.97217 5.05525 5.10074 5.20773 5.21723 5.24318 5.28329 5.35046 5.48765 5.53350 5.60832 5.76988 5.79395 6.34690 6.64824 7.01660 7.10718 7.35235 7.84611 8.33016 9.13556 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.003726 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.672386 B = 7512.216743 C = 8679.285642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.049 4.049 3 Si 0.960 3.040 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.266 4.266 8 H 0.068 0.932 9 N -0.611 5.611 10 C 0.134 3.866 11 C -0.122 4.122 12 C -0.106 4.106 13 C 0.130 3.870 14 H 0.051 0.949 15 N -0.705 5.705 16 C 0.516 3.484 17 O -0.583 6.583 18 C -0.092 4.092 19 H 0.149 0.851 20 C -0.062 4.062 21 C -0.156 4.156 22 C -0.070 4.070 23 C -0.166 4.166 24 C 0.088 3.912 25 N -0.509 5.509 26 C 0.098 3.902 27 C -0.058 4.058 28 C 0.180 3.820 29 H 0.246 0.754 30 H 0.021 0.979 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.415 0.585 37 H 0.070 0.930 38 H 0.103 0.897 39 H 0.157 0.843 40 H 0.173 0.827 41 H 0.184 0.816 42 H 0.117 0.883 43 H 0.069 0.931 44 H 0.042 0.958 45 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.064 -9.779 -15.481 20.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.244 4.244 3 Si 0.788 3.212 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.396 4.396 8 H 0.086 0.914 9 N -0.334 5.334 10 C 0.010 3.990 11 C -0.161 4.161 12 C -0.144 4.144 13 C 0.024 3.976 14 H 0.069 0.931 15 N -0.356 5.356 16 C 0.303 3.697 17 O -0.463 6.463 18 C -0.113 4.113 19 H 0.167 0.833 20 C -0.100 4.100 21 C -0.158 4.158 22 C -0.096 4.096 23 C -0.185 4.185 24 C -0.069 4.069 25 N -0.218 5.218 26 C -0.039 4.039 27 C -0.096 4.096 28 C 0.052 3.948 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.252 0.748 37 H 0.088 0.912 38 H 0.121 0.879 39 H 0.174 0.826 40 H 0.190 0.810 41 H 0.201 0.799 42 H 0.135 0.865 43 H 0.087 0.913 44 H 0.060 0.940 45 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -10.017 -9.450 -14.867 20.265 hybrid contribution 0.483 1.635 -0.149 1.711 sum -9.533 -7.815 -15.016 19.428 Atomic orbital electron populations 1.70166 1.06680 1.25588 1.55187 1.25756 0.95987 1.01491 1.01209 0.85454 0.77794 0.79595 0.78401 1.21064 1.22141 1.19139 1.19473 0.93051 0.86287 1.40781 0.91440 1.44257 1.36073 1.02657 1.50457 1.21186 0.97498 0.85641 0.94715 1.21900 0.97127 1.00051 0.97035 1.21641 0.98974 0.93965 0.99862 1.21496 0.87233 0.97876 0.91024 0.93050 1.45876 1.25819 1.31519 1.32396 1.20849 0.87335 0.80667 0.80845 1.90727 1.47742 1.35928 1.71856 1.21945 0.90640 1.02719 0.96037 0.83319 1.20789 0.91216 0.97374 1.00639 1.21590 0.97190 0.99671 0.97388 1.21473 0.94703 0.95509 0.97915 1.22466 0.94774 1.01032 1.00243 1.23216 1.01328 0.92242 0.90117 1.66834 1.08213 1.18169 1.28597 1.21858 0.90067 0.96903 0.95095 1.20862 0.90593 1.01809 0.96334 1.20788 0.87945 0.97539 0.88478 0.94495 0.96112 0.92743 0.88457 0.93050 0.90719 0.89344 0.74843 0.91203 0.87869 0.82571 0.80980 0.79940 0.86501 0.91268 0.93974 0.98351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.63 11.19 21.65 0.24 -58.39 16 2 C -0.05 -2.91 4.91 84.86 0.42 -2.49 16 3 Si 0.96 48.17 29.59 68.60 2.03 50.20 16 4 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 5 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.27 -15.42 9.59 84.04 0.81 -14.62 16 8 H 0.07 3.79 7.89 -2.91 -0.02 3.76 16 9 N -0.61 -31.81 3.00 -699.06 -2.09 -33.90 16 10 C 0.13 5.47 6.51 86.36 0.56 6.03 16 11 C -0.12 -3.75 6.08 30.67 0.19 -3.56 16 12 C -0.11 -3.04 5.35 30.62 0.16 -2.88 16 13 C 0.13 4.97 2.60 45.06 0.12 5.08 16 14 H 0.05 2.30 7.58 -2.39 -0.02 2.28 16 15 N -0.70 -21.46 5.02 -442.16 -2.22 -23.68 16 16 C 0.52 17.24 7.03 87.66 0.62 17.85 16 17 O -0.58 -26.17 15.23 -3.03 -0.05 -26.22 16 18 C -0.09 -2.17 3.46 -10.65 -0.04 -2.20 16 19 H 0.15 2.32 8.14 -2.39 -0.02 2.30 16 20 C -0.06 -1.56 6.06 30.48 0.18 -1.37 16 21 C -0.16 -3.76 6.16 -19.60 -0.12 -3.89 16 22 C -0.07 -1.33 10.17 22.47 0.23 -1.10 16 23 C -0.17 -2.64 10.12 22.35 0.23 -2.42 16 24 C 0.09 1.72 11.18 84.71 0.95 2.67 16 25 N -0.51 -13.50 10.35 -182.98 -1.89 -15.40 16 26 C 0.10 2.59 7.32 42.72 0.31 2.90 16 27 C -0.06 -1.42 6.25 30.52 0.19 -1.23 16 28 C 0.18 9.04 4.88 86.36 0.42 9.46 16 29 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.05 2.18 7.94 -2.39 -0.02 2.16 16 32 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.41 9.03 8.59 -92.71 -0.80 8.23 16 37 H 0.07 2.25 7.07 -2.38 -0.02 2.24 16 38 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 40 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 42 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.07 2.13 7.88 -2.39 -0.02 2.11 16 44 H 0.04 2.56 6.04 -2.39 -0.01 2.55 16 45 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 Total: -1.00 -81.49 362.13 1.44 -80.05 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.20 Total: 19.10 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 5.22 Total: 8.24 kcal Atomic # 7 Polarization: -125.41 SS G_CDS: -5.97 Total: -131.37 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.05 Total: -26.22 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.03 Total: 50.20 kcal Total: -81.49 1.44 -80.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009327720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.556 kcal (2) G-P(sol) polarization free energy of solvation -81.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds