Wall clock time and date at job start Tue Mar 31 2020 11:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99872 * 2 1 4 4 H 1.48501 * 109.47302 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47633 * 300.00363 * 3 2 1 6 6 H 1.48505 * 109.46790 * 60.00409 * 3 2 1 7 7 C 1.38817 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99935 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00062 * 359.97438 * 7 2 1 10 10 C 1.47019 * 125.64515 * 359.97438 * 9 7 2 11 11 C 1.54330 * 107.26866 * 178.98653 * 10 9 7 12 12 C 1.55157 * 102.94040 * 337.80711 * 11 10 9 13 13 H 1.09000 * 111.00384 * 153.61828 * 12 11 10 14 14 N 1.46501 * 111.00110 * 277.42668 * 12 11 10 15 15 C 1.34781 * 119.99694 * 204.99947 * 14 12 11 16 16 O 1.21509 * 119.99959 * 0.02562 * 15 14 12 17 17 C 1.48173 * 119.99727 * 180.02562 * 15 14 12 18 18 C 1.39174 * 119.81640 * 179.97438 * 17 15 14 19 19 C 1.38999 * 119.24773 * 179.60494 * 18 17 15 20 20 C 1.37862 * 118.56195 * 0.21966 * 19 18 17 21 21 C 1.39122 * 119.06785 * 0.19936 * 20 19 18 22 22 N 1.31309 * 121.20106 * 359.81523 * 21 20 19 23 23 C 1.50500 * 122.48837 * 180.34665 * 20 19 18 24 24 C 1.52793 * 110.47849 * 342.28608 * 23 20 19 25 25 C 1.53307 * 108.50783 * 51.12101 * 24 23 20 26 26 C 1.50360 * 118.61681 * 180.02562 * 19 18 17 27 27 C 1.47414 * 125.64690 * 180.02562 * 9 7 2 28 28 H 0.97001 * 120.00244 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.88579 * 59.57355 * 10 9 7 30 30 H 1.08996 * 109.88558 * 298.40264 * 10 9 7 31 31 H 1.08993 * 110.71880 * 219.44314 * 11 10 9 32 32 H 1.08996 * 110.86986 * 96.24213 * 11 10 9 33 33 H 0.96998 * 120.00456 * 25.00548 * 14 12 11 34 34 H 1.08002 * 120.37993 * 359.88468 * 18 17 15 35 35 H 1.08004 * 119.39886 * 179.79928 * 21 20 19 36 36 H 1.08995 * 109.30662 * 221.97416 * 23 20 19 37 37 H 1.08997 * 109.13657 * 102.48415 * 23 20 19 38 38 H 1.09003 * 109.63097 * 291.41080 * 24 23 20 39 39 H 1.09007 * 109.62936 * 170.82426 * 24 23 20 40 40 H 1.08995 * 109.64037 * 170.47637 * 25 24 23 41 41 H 1.08999 * 109.64235 * 49.84702 * 25 24 23 42 42 H 1.09003 * 109.30062 * 283.02422 * 26 19 18 43 43 H 1.08990 * 109.30558 * 42.61292 * 26 19 18 44 44 H 1.09002 * 110.37148 * 85.24469 * 27 9 7 45 45 H 1.08998 * 110.36637 * 322.92176 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8914 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1374 -2.5328 0.0005 11 6 -0.4484 -4.0442 -0.0260 12 6 0.8516 -4.6561 -0.6116 13 1 0.9833 -5.6856 -0.2785 14 7 0.8571 -4.5758 -2.0744 15 6 1.5885 -5.4493 -2.7944 16 8 2.2429 -6.3038 -2.2304 17 6 1.5946 -5.3677 -4.2739 18 6 2.3516 -6.2713 -5.0137 19 6 2.3422 -6.1892 -6.4013 20 6 1.5819 -5.2062 -6.9982 21 6 0.8567 -4.3315 -6.1954 22 7 0.8826 -4.4298 -4.8862 23 6 1.5013 -5.0420 -8.4921 24 6 2.6587 -5.7707 -9.1731 25 6 2.7070 -7.2088 -8.6442 26 6 3.1647 -7.1729 -7.1865 27 6 1.9335 -3.7311 -0.0005 28 1 -0.4850 0.8400 0.0004 29 1 -0.5581 -2.0523 -0.8828 30 1 -0.5536 -2.0845 0.9026 31 1 -1.2989 -4.2515 -0.6753 32 1 -0.6326 -4.4204 0.9803 33 1 0.3345 -3.8939 -2.5247 34 1 2.9362 -7.0306 -4.5156 35 1 0.2619 -3.5574 -6.6573 36 1 1.5467 -3.9818 -8.7410 37 1 0.5570 -5.4551 -8.8466 38 1 3.5962 -5.2643 -8.9434 39 1 2.5003 -5.7823 -10.2516 40 1 3.4122 -7.7931 -9.2352 41 1 1.7145 -7.6553 -8.7057 42 1 4.2137 -6.8794 -7.1453 43 1 3.0510 -8.1658 -6.7517 44 1 2.1672 -4.0418 1.0178 45 1 2.8326 -3.7405 -0.6166 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015193098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:31 Heat of formation + Delta-G solvation = 9.309485 kcal Electronic energy + Delta-G solvation = -25999.619093 eV Core-core repulsion = 22402.707292 eV Total energy + Delta-G solvation = -3596.911801 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.97502 -39.28382 -37.33379 -36.79458 -33.72028 -33.01752 -31.96630 -31.19291 -29.73325 -29.07029 -27.24118 -24.89815 -24.30757 -23.95411 -22.89415 -21.47330 -20.06586 -19.85839 -19.46868 -17.79092 -16.91181 -16.56889 -15.93400 -15.60637 -15.26811 -14.99291 -14.68578 -14.58592 -14.25018 -13.98037 -13.84303 -13.58670 -13.41402 -13.15110 -12.83316 -12.50657 -12.43127 -12.18550 -11.87663 -11.76616 -11.30862 -11.29049 -10.92704 -10.91566 -10.87025 -10.67490 -10.35705 -10.07167 -9.98379 -9.89144 -9.63627 -9.57764 -9.38217 -9.04582 -8.67316 -8.45378 -6.77014 -5.67405 -2.99696 0.63052 1.11445 2.88451 3.41229 3.42935 3.48256 3.50552 3.89544 4.16667 4.30256 4.32523 4.50304 4.54055 4.61352 4.66884 4.94309 5.01465 5.11933 5.14236 5.30472 5.34541 5.41442 5.46005 5.51090 5.52669 5.57024 5.60473 5.65271 5.74570 5.82013 5.89550 5.89872 5.92301 6.12772 6.25608 6.42663 6.52017 6.55094 6.56928 6.72556 7.07472 7.58810 7.61928 7.68117 7.84812 8.02340 8.29480 8.53311 9.26584 9.86547 10.52449 11.44627 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016086 B = 0.003220 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.244735 B = 8693.731829 C = 9646.477339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.176 3.824 11 C -0.153 4.153 12 C 0.125 3.875 13 H 0.091 0.909 14 N -0.680 5.680 15 C 0.568 3.432 16 O -0.547 6.547 17 C 0.081 3.919 18 C -0.113 4.113 19 C -0.045 4.045 20 C -0.114 4.114 21 C 0.103 3.897 22 N -0.453 5.453 23 C -0.078 4.078 24 C -0.121 4.121 25 C -0.120 4.120 26 C -0.083 4.083 27 C 0.126 3.874 28 H 0.251 0.749 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.414 0.586 34 H 0.146 0.854 35 H 0.161 0.839 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.029 0.971 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.331 -14.464 -18.296 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.351 4.351 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.051 3.949 11 C -0.192 4.192 12 C 0.019 3.981 13 H 0.109 0.891 14 N -0.329 5.329 15 C 0.352 3.648 16 O -0.425 6.425 17 C -0.056 4.056 18 C -0.134 4.134 19 C -0.053 4.053 20 C -0.116 4.116 21 C -0.059 4.059 22 N -0.164 5.164 23 C -0.116 4.116 24 C -0.159 4.159 25 C -0.158 4.158 26 C -0.120 4.120 27 C -0.002 4.002 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.250 0.750 34 H 0.164 0.836 35 H 0.178 0.822 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.047 0.953 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.266 -14.252 -17.280 22.435 hybrid contribution 0.641 0.843 -0.624 1.229 sum 1.907 -13.409 -17.905 22.450 Atomic orbital electron populations 1.69964 1.04785 1.24778 1.57528 1.24772 0.95725 0.97546 1.02482 0.86054 0.78732 0.83894 0.77164 1.20603 1.21834 1.21817 1.19095 0.90425 0.82398 1.43177 0.90557 1.44476 1.01511 0.99860 1.87177 1.21176 0.84524 0.87910 1.01287 1.23227 0.95683 1.00089 1.00225 1.22228 0.97652 0.99548 0.78650 0.89070 1.45715 1.47062 1.33026 1.07126 1.17828 0.79939 0.81757 0.85231 1.90738 1.43428 1.37046 1.71284 1.21186 0.96325 0.93434 0.94664 1.22098 0.98478 0.99478 0.93314 1.19842 0.96389 0.95789 0.93276 1.20750 0.97604 0.95962 0.97320 1.22847 0.96811 0.97664 0.88537 1.67546 1.17682 1.19426 1.11707 1.20438 0.99652 1.01726 0.89774 1.21576 0.98749 0.95724 0.99848 1.21577 1.01994 0.97094 0.95091 1.20493 0.98951 0.97754 0.94812 1.21939 0.94730 0.86417 0.97069 0.93903 0.93486 0.93725 0.91543 0.90872 0.74956 0.83593 0.82206 0.90032 0.90077 0.91410 0.91111 0.91090 0.91442 0.89842 0.90035 0.95320 0.94015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.19 10.31 55.49 0.57 -26.62 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.22 -6.35 10.28 -15.06 -0.15 -6.50 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.60 -15.67 3.39 -170.08 -0.58 -16.25 16 10 C 0.18 4.24 5.36 -3.06 -0.02 4.22 16 11 C -0.15 -2.86 6.55 -24.89 -0.16 -3.02 16 12 C 0.12 2.37 3.43 -65.78 -0.23 2.15 16 13 H 0.09 1.65 7.54 -51.93 -0.39 1.26 16 14 N -0.68 -12.69 5.18 -52.56 -0.27 -12.97 16 15 C 0.57 10.43 7.81 -12.18 -0.10 10.34 16 16 O -0.55 -10.98 15.97 5.36 0.09 -10.90 16 17 C 0.08 1.28 6.75 -83.05 -0.56 0.72 16 18 C -0.11 -1.50 9.26 -38.95 -0.36 -1.87 16 19 C -0.05 -0.49 5.74 -104.64 -0.60 -1.09 16 20 C -0.11 -1.16 5.75 -104.53 -0.60 -1.76 16 21 C 0.10 1.23 10.79 -17.45 -0.19 1.05 16 22 N -0.45 -6.96 9.55 -9.73 -0.09 -7.05 16 23 C -0.08 -0.54 5.71 -28.09 -0.16 -0.70 16 24 C -0.12 -0.73 5.97 -26.68 -0.16 -0.88 16 25 C -0.12 -0.72 5.98 -26.66 -0.16 -0.88 16 26 C -0.08 -0.63 5.71 -28.14 -0.16 -0.80 16 27 C 0.13 2.79 6.93 -2.53 -0.02 2.77 16 28 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.05 1.24 7.38 -51.93 -0.38 0.86 16 30 H 0.04 1.19 7.51 -51.93 -0.39 0.80 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.41 7.85 8.00 -40.82 -0.33 7.53 16 34 H 0.15 1.86 7.64 -52.49 -0.40 1.46 16 35 H 0.16 1.49 8.06 -52.48 -0.42 1.07 16 36 H 0.08 0.49 8.13 -51.93 -0.42 0.07 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 39 H 0.07 0.33 8.14 -51.92 -0.42 -0.10 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 362.65 15.07 5.47 5.47 Total: -1.00 -32.90 362.65 -10.49 -43.39 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.93 Total: 4.01 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -3.72 Total: 3.38 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: -0.37 Total: -62.88 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.90 -10.49 -43.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015193098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.695 kcal (2) G-P(sol) polarization free energy of solvation -32.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds