Wall clock time and date at job start Tue Mar 31 2020 11:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99872 * 2 1 4 4 H 1.48501 * 109.47302 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47633 * 300.00363 * 3 2 1 6 6 H 1.48505 * 109.46790 * 60.00409 * 3 2 1 7 7 C 1.38817 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99935 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00062 * 359.97438 * 7 2 1 10 10 C 1.47019 * 125.64515 * 359.97438 * 9 7 2 11 11 C 1.54330 * 107.26866 * 178.98653 * 10 9 7 12 12 C 1.55157 * 102.94040 * 337.80711 * 11 10 9 13 13 H 1.09000 * 111.00384 * 153.61828 * 12 11 10 14 14 N 1.46501 * 111.00110 * 277.42668 * 12 11 10 15 15 C 1.34781 * 119.99694 * 204.99947 * 14 12 11 16 16 O 1.21509 * 119.99959 * 0.02562 * 15 14 12 17 17 C 1.48173 * 119.99727 * 180.02562 * 15 14 12 18 18 C 1.39174 * 119.81640 * 179.97438 * 17 15 14 19 19 C 1.38999 * 119.24773 * 179.60494 * 18 17 15 20 20 C 1.37862 * 118.56195 * 0.21966 * 19 18 17 21 21 C 1.39122 * 119.06785 * 0.19936 * 20 19 18 22 22 N 1.31309 * 121.20106 * 359.81523 * 21 20 19 23 23 C 1.50500 * 122.48837 * 180.34665 * 20 19 18 24 24 C 1.52793 * 110.47849 * 342.28608 * 23 20 19 25 25 C 1.53307 * 108.50783 * 51.12101 * 24 23 20 26 26 C 1.50360 * 118.61681 * 180.02562 * 19 18 17 27 27 C 1.47414 * 125.64690 * 180.02562 * 9 7 2 28 28 H 0.97001 * 120.00244 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.88579 * 59.57355 * 10 9 7 30 30 H 1.08996 * 109.88558 * 298.40264 * 10 9 7 31 31 H 1.08993 * 110.71880 * 219.44314 * 11 10 9 32 32 H 1.08996 * 110.86986 * 96.24213 * 11 10 9 33 33 H 0.96998 * 120.00456 * 25.00548 * 14 12 11 34 34 H 1.08002 * 120.37993 * 359.88468 * 18 17 15 35 35 H 1.08004 * 119.39886 * 179.79928 * 21 20 19 36 36 H 1.08995 * 109.30662 * 221.97416 * 23 20 19 37 37 H 1.08997 * 109.13657 * 102.48415 * 23 20 19 38 38 H 1.09003 * 109.63097 * 291.41080 * 24 23 20 39 39 H 1.09007 * 109.62936 * 170.82426 * 24 23 20 40 40 H 1.08995 * 109.64037 * 170.47637 * 25 24 23 41 41 H 1.08999 * 109.64235 * 49.84702 * 25 24 23 42 42 H 1.09003 * 109.30062 * 283.02422 * 26 19 18 43 43 H 1.08990 * 109.30558 * 42.61292 * 26 19 18 44 44 H 1.09002 * 110.37148 * 85.24469 * 27 9 7 45 45 H 1.08998 * 110.36637 * 322.92176 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8914 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1374 -2.5328 0.0005 11 6 -0.4484 -4.0442 -0.0260 12 6 0.8516 -4.6561 -0.6116 13 1 0.9833 -5.6856 -0.2785 14 7 0.8571 -4.5758 -2.0744 15 6 1.5885 -5.4493 -2.7944 16 8 2.2429 -6.3038 -2.2304 17 6 1.5946 -5.3677 -4.2739 18 6 2.3516 -6.2713 -5.0137 19 6 2.3422 -6.1892 -6.4013 20 6 1.5819 -5.2062 -6.9982 21 6 0.8567 -4.3315 -6.1954 22 7 0.8826 -4.4298 -4.8862 23 6 1.5013 -5.0420 -8.4921 24 6 2.6587 -5.7707 -9.1731 25 6 2.7070 -7.2088 -8.6442 26 6 3.1647 -7.1729 -7.1865 27 6 1.9335 -3.7311 -0.0005 28 1 -0.4850 0.8400 0.0004 29 1 -0.5581 -2.0523 -0.8828 30 1 -0.5536 -2.0845 0.9026 31 1 -1.2989 -4.2515 -0.6753 32 1 -0.6326 -4.4204 0.9803 33 1 0.3345 -3.8939 -2.5247 34 1 2.9362 -7.0306 -4.5156 35 1 0.2619 -3.5574 -6.6573 36 1 1.5467 -3.9818 -8.7410 37 1 0.5570 -5.4551 -8.8466 38 1 3.5962 -5.2643 -8.9434 39 1 2.5003 -5.7823 -10.2516 40 1 3.4122 -7.7931 -9.2352 41 1 1.7145 -7.6553 -8.7057 42 1 4.2137 -6.8794 -7.1453 43 1 3.0510 -8.1658 -6.7517 44 1 2.1672 -4.0418 1.0178 45 1 2.8326 -3.7405 -0.6166 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015193098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:30 Heat of formation + Delta-G solvation = -11.246619 kcal Electronic energy + Delta-G solvation = -26000.510472 eV Core-core repulsion = 22402.707292 eV Total energy + Delta-G solvation = -3597.803180 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.97327 -40.65403 -38.90115 -37.70270 -35.47069 -33.85398 -33.70237 -32.18722 -31.05495 -30.47084 -28.97979 -26.60000 -25.45177 -24.90390 -23.69651 -22.62324 -21.95748 -21.34503 -20.45199 -19.10908 -18.66316 -17.84385 -17.11619 -16.67294 -16.59088 -16.34093 -16.13725 -15.70927 -15.55911 -15.34202 -14.87489 -14.75019 -14.65573 -14.11565 -13.93710 -13.87403 -13.60223 -13.55565 -13.25630 -12.99502 -12.90554 -12.83971 -12.34148 -12.14132 -12.00796 -11.87232 -11.84418 -11.75877 -11.62785 -11.48200 -11.30847 -10.74088 -10.48035 -10.43752 -10.19775 -9.87255 -8.87601 -7.85848 -5.20409 -0.40655 0.18748 1.44057 1.44782 1.55186 1.63913 2.08288 2.48052 2.79048 3.12413 3.32887 3.55309 3.63160 3.64996 3.76313 3.81815 3.86270 4.04497 4.05021 4.06106 4.28499 4.34317 4.42419 4.58483 4.62801 4.64700 4.71077 4.73494 4.77123 4.85847 4.92816 4.94754 5.00272 5.02846 5.05520 5.23065 5.27179 5.37189 5.42407 5.46619 5.50432 5.65100 5.67199 5.75044 6.18682 6.40967 6.79175 7.10271 7.10623 7.75610 8.40165 9.24416 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016086 B = 0.003220 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.244735 B = 8693.731829 C = 9646.477339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.977 3.023 4 H -0.272 1.272 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.621 5.621 10 C 0.185 3.815 11 C -0.134 4.134 12 C 0.136 3.864 13 H 0.109 0.891 14 N -0.684 5.684 15 C 0.566 3.434 16 O -0.571 6.571 17 C 0.047 3.953 18 C -0.116 4.116 19 C -0.047 4.047 20 C -0.100 4.100 21 C 0.092 3.908 22 N -0.482 5.482 23 C -0.079 4.079 24 C -0.121 4.121 25 C -0.117 4.117 26 C -0.084 4.084 27 C 0.123 3.877 28 H 0.247 0.753 29 H 0.016 0.984 30 H 0.013 0.987 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.411 0.589 34 H 0.145 0.855 35 H 0.184 0.816 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.039 0.961 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.666 -15.395 -20.750 25.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.254 4.254 3 Si 0.805 3.195 4 H -0.196 1.196 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.371 4.371 8 H 0.091 0.909 9 N -0.348 5.348 10 C 0.060 3.940 11 C -0.172 4.172 12 C 0.030 3.970 13 H 0.127 0.873 14 N -0.332 5.332 15 C 0.353 3.647 16 O -0.451 6.451 17 C -0.088 4.088 18 C -0.137 4.137 19 C -0.054 4.054 20 C -0.102 4.102 21 C -0.070 4.070 22 N -0.193 5.193 23 C -0.116 4.116 24 C -0.158 4.158 25 C -0.155 4.155 26 C -0.121 4.121 27 C -0.003 4.003 28 H 0.057 0.943 29 H 0.035 0.965 30 H 0.031 0.969 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.247 0.753 34 H 0.163 0.837 35 H 0.201 0.799 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.057 0.943 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.613 -15.214 -19.736 24.972 hybrid contribution 0.568 1.117 0.037 1.254 sum 2.181 -14.097 -19.699 24.322 Atomic orbital electron populations 1.70166 1.05986 1.25181 1.58130 1.25572 0.96673 1.00660 1.02526 0.85041 0.77937 0.79643 0.76871 1.19629 1.21704 1.21619 1.19385 0.90665 0.83864 1.43186 0.90941 1.44706 1.02463 1.00551 1.87044 1.20939 0.83425 0.91353 0.98257 1.23088 0.96214 0.95687 1.02214 1.22111 0.96341 0.99493 0.79022 0.87337 1.45736 1.47375 1.33215 1.06914 1.18257 0.78971 0.80969 0.86522 1.90700 1.44301 1.37898 1.72192 1.20899 0.98994 0.95564 0.93358 1.22209 0.97995 0.98887 0.94593 1.20232 0.96392 0.96402 0.92394 1.21174 0.95490 0.94310 0.99222 1.23365 0.97295 0.98648 0.87695 1.67451 1.18486 1.19865 1.13522 1.20586 1.01006 1.02953 0.87056 1.21607 0.97947 0.95327 1.00955 1.21597 1.02547 0.97509 0.93811 1.20602 0.98668 0.97106 0.95700 1.22064 0.95073 0.85658 0.97533 0.94315 0.96540 0.96888 0.89250 0.88495 0.75288 0.83678 0.79874 0.88754 0.88354 0.91951 0.89075 0.89338 0.91255 0.89189 0.89319 0.94326 0.95687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.22 10.31 21.65 0.22 -57.00 16 2 C -0.06 -3.55 5.49 84.86 0.47 -3.09 16 3 Si 0.98 47.05 29.55 68.60 2.03 49.08 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 7 C -0.24 -14.14 10.28 84.03 0.86 -13.28 16 8 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.62 -33.08 3.39 -692.01 -2.35 -35.43 16 10 C 0.19 9.17 5.36 86.73 0.47 9.63 16 11 C -0.13 -4.88 6.55 31.78 0.21 -4.67 16 12 C 0.14 5.14 3.43 46.38 0.16 5.30 16 13 H 0.11 3.80 7.54 -2.39 -0.02 3.78 16 14 N -0.68 -25.97 5.18 -438.51 -2.27 -28.24 16 15 C 0.57 21.30 7.81 86.88 0.68 21.98 16 16 O -0.57 -23.36 15.97 -3.75 -0.06 -23.42 16 17 C 0.05 1.53 6.75 41.88 0.28 1.81 16 18 C -0.12 -3.09 9.26 22.68 0.21 -2.88 16 19 C -0.05 -0.93 5.74 -19.88 -0.11 -1.05 16 20 C -0.10 -1.84 5.75 -19.80 -0.11 -1.95 16 21 C 0.09 2.11 10.79 84.98 0.92 3.02 16 22 N -0.48 -14.95 9.55 -184.70 -1.76 -16.72 16 23 C -0.08 -0.82 5.71 29.72 0.17 -0.65 16 24 C -0.12 -1.01 5.97 30.63 0.18 -0.82 16 25 C -0.12 -1.01 5.98 30.64 0.18 -0.83 16 26 C -0.08 -1.09 5.71 29.68 0.17 -0.92 16 27 C 0.12 5.55 6.93 86.86 0.60 6.15 16 28 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.02 0.90 7.38 -2.39 -0.02 0.88 16 30 H 0.01 0.71 7.51 -2.39 -0.02 0.70 16 31 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 32 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 33 H 0.41 16.06 8.00 -92.71 -0.74 15.32 16 34 H 0.15 3.76 7.64 -2.91 -0.02 3.74 16 35 H 0.18 3.12 8.06 -2.91 -0.02 3.09 16 36 H 0.09 0.81 8.13 -2.39 -0.02 0.79 16 37 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.06 0.61 8.10 -2.39 -0.02 0.59 16 39 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 40 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.07 0.60 8.10 -2.39 -0.02 0.58 16 42 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -73.52 362.65 1.39 -72.13 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.25 Total: 21.83 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: 5.33 Total: 17.77 kcal Atomic # 7 Polarization: -131.23 SS G_CDS: -6.16 Total: -137.39 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.06 Total: -23.42 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -73.52 1.39 -72.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015193098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.879 kcal (2) G-P(sol) polarization free energy of solvation -73.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds