Wall clock time and date at job start Tue Mar 31 2020 11:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00012 * 2 1 4 4 H 1.48495 * 109.47385 * 264.53985 * 3 2 1 5 5 H 1.48504 * 109.47053 * 24.54167 * 3 2 1 6 6 H 1.48501 * 109.46745 * 144.54140 * 3 2 1 7 7 C 1.38810 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99928 * 337.62233 * 7 2 1 9 9 N 1.36936 * 120.00126 * 157.62767 * 7 2 1 10 10 C 1.47430 * 125.64675 * 341.47459 * 9 7 2 11 11 C 1.54904 * 104.83293 * 204.16746 * 10 9 7 12 12 C 1.55157 * 101.58119 * 322.99243 * 11 10 9 13 13 H 1.09007 * 110.87211 * 153.93578 * 12 11 10 14 14 N 1.46501 * 110.71986 * 277.13773 * 12 11 10 15 15 C 1.34781 * 119.99589 * 199.97608 * 14 12 11 16 16 O 1.21273 * 120.00213 * 0.02562 * 15 14 12 17 17 C 1.50701 * 119.99469 * 179.97438 * 15 14 12 18 18 H 1.09004 * 109.22200 * 59.45902 * 17 15 14 19 19 C 1.52721 * 109.25211 * 178.91009 * 17 15 14 20 20 C 1.53323 * 108.45158 * 171.58241 * 19 17 15 21 21 C 1.52778 * 108.35988 * 290.18587 * 20 19 17 22 22 C 1.50500 * 110.61093 * 50.69389 * 21 20 19 23 23 C 1.39183 * 117.97543 * 162.29761 * 22 21 20 24 24 C 1.38412 * 118.86156 * 179.62807 * 23 22 21 25 25 C 1.38233 * 118.84388 * 0.27075 * 24 23 22 26 26 N 1.31518 * 120.61209 * 0.16484 * 25 24 23 27 27 C 1.32701 * 122.39545 * 359.91117 * 26 25 24 28 28 C 1.47025 * 125.65323 * 161.52361 * 9 7 2 29 29 H 0.97002 * 119.99647 * 359.97438 * 1 2 3 30 30 H 1.09000 * 110.36665 * 323.00945 * 10 9 7 31 31 H 1.09000 * 110.36239 * 85.32743 * 10 9 7 32 32 H 1.09001 * 111.00807 * 204.91752 * 11 10 9 33 33 H 1.09003 * 111.00304 * 81.06959 * 11 10 9 34 34 H 0.96994 * 120.00291 * 19.97951 * 14 12 11 35 35 H 1.09004 * 109.63915 * 291.26763 * 19 17 15 36 36 H 1.08996 * 109.63987 * 51.89022 * 19 17 15 37 37 H 1.08994 * 109.68897 * 49.90680 * 20 19 17 38 38 H 1.09004 * 109.68362 * 170.47886 * 20 19 17 39 39 H 1.08997 * 109.25855 * 171.17627 * 21 20 19 40 40 H 1.08996 * 109.26282 * 290.66695 * 21 20 19 41 41 H 1.07998 * 120.56871 * 359.90463 * 23 22 21 42 42 H 1.07999 * 120.57438 * 180.25582 * 24 23 22 43 43 H 1.08001 * 119.69687 * 180.17543 * 25 24 23 44 44 H 1.08996 * 109.87922 * 59.48426 * 28 9 7 45 45 H 1.09001 * 109.87829 * 298.32117 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6131 1.9798 -1.3936 5 1 1.3947 2.6832 0.5815 6 1 3.4853 1.4761 0.8122 7 6 2.0102 -1.2022 -0.0005 8 1 1.5312 -2.1024 0.3551 9 7 3.3023 -1.2467 -0.4519 10 6 3.9506 -0.2322 -1.3029 11 6 5.0951 -0.9896 -2.0210 12 6 5.5797 -1.9524 -0.9050 13 1 6.0405 -2.8427 -1.3332 14 7 6.5116 -1.2721 -0.0022 15 6 7.3480 -1.9928 0.7709 16 8 7.3296 -3.2043 0.7188 17 6 8.3069 -1.2929 1.6992 18 1 7.7428 -0.6809 2.4031 19 6 9.1120 -2.3360 2.4715 20 6 10.2204 -1.6159 3.2483 21 6 11.2482 -1.0924 2.2464 22 6 10.5710 -0.3151 1.1499 23 6 11.3526 0.5368 0.3750 24 6 10.7500 1.2547 -0.6435 25 6 9.3917 1.1047 -0.8519 26 7 8.6831 0.2967 -0.0938 27 6 9.2224 -0.4075 0.8932 28 6 4.2726 -2.3145 -0.1691 29 1 -0.4850 0.8401 0.0004 30 1 3.2412 0.1619 -2.0307 31 1 4.3547 0.5741 -0.6908 32 1 5.8897 -0.3056 -2.3191 33 1 4.7176 -1.5451 -2.8796 34 1 6.5265 -0.3032 0.0393 35 1 8.4584 -2.8612 3.1680 36 1 9.5556 -3.0464 1.7739 37 1 9.7951 -0.7825 3.8074 38 1 10.6997 -2.3132 3.9354 39 1 11.9575 -0.4462 2.7634 40 1 11.7831 -1.9343 1.8069 41 1 12.4119 0.6326 0.5622 42 1 11.3309 1.9205 -1.2644 43 1 8.9079 1.6561 -1.6446 44 1 3.8922 -3.2676 -0.5363 45 1 4.4555 -2.3744 0.9037 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015594560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:36 Heat of formation + Delta-G solvation = 21.279625 kcal Electronic energy + Delta-G solvation = -26930.347783 eV Core-core repulsion = 23333.955047 eV Total energy + Delta-G solvation = -3596.392737 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.19539 -39.40645 -37.64582 -36.45138 -33.95664 -33.45479 -31.85923 -30.72776 -30.29437 -29.35418 -27.85305 -25.03175 -24.17093 -23.51880 -23.24719 -20.95474 -20.75981 -19.88427 -19.65880 -17.45132 -16.91394 -16.75748 -16.60484 -15.96735 -15.62244 -15.16470 -14.76770 -14.55291 -14.12414 -14.05979 -13.80526 -13.65549 -13.26889 -13.21308 -13.15054 -12.74664 -12.56015 -12.19058 -12.08230 -11.60039 -11.49884 -11.31139 -11.15296 -11.06552 -10.92002 -10.84217 -10.83099 -10.11133 -10.00311 -9.94861 -9.78139 -9.51632 -9.38669 -8.96111 -8.63670 -8.57291 -6.97752 -5.89372 -3.18699 0.81468 0.98060 2.86389 3.36403 3.38016 3.50044 3.52775 3.62320 3.93473 4.25259 4.44500 4.52544 4.59088 4.65528 4.68144 4.83693 4.93866 5.01670 5.12493 5.14040 5.18198 5.25148 5.33545 5.38675 5.46979 5.50128 5.53953 5.60708 5.67634 5.70071 5.85254 5.92631 5.99478 6.01633 6.12166 6.15373 6.29111 6.41172 6.48147 6.61955 6.69030 6.79779 7.06877 7.71812 7.77265 7.94736 8.36807 8.57671 8.89960 9.74587 10.24212 11.27090 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017702 B = 0.003954 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.348065 B = 7079.702589 C = 7650.694027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.020 3.980 3 Si 0.884 3.116 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.278 1.278 7 C -0.238 4.238 8 H 0.092 0.908 9 N -0.608 5.608 10 C 0.111 3.889 11 C -0.136 4.136 12 C 0.131 3.869 13 H 0.090 0.910 14 N -0.695 5.695 15 C 0.528 3.472 16 O -0.549 6.549 17 C -0.059 4.059 18 H 0.114 0.886 19 C -0.099 4.099 20 C -0.122 4.122 21 C -0.078 4.078 22 C -0.120 4.120 23 C -0.077 4.077 24 C -0.174 4.174 25 C 0.107 3.893 26 N -0.483 5.483 27 C 0.141 3.859 28 C 0.128 3.872 29 H 0.262 0.738 30 H 0.060 0.940 31 H 0.023 0.977 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.409 0.591 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.158 0.842 44 H 0.041 0.959 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.209 1.990 1.511 27.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.178 4.178 3 Si 0.715 3.285 4 H -0.213 1.213 5 H -0.232 1.232 6 H -0.204 1.204 7 C -0.365 4.365 8 H 0.109 0.891 9 N -0.336 5.336 10 C -0.015 4.015 11 C -0.175 4.175 12 C 0.026 3.974 13 H 0.108 0.892 14 N -0.346 5.346 15 C 0.312 3.688 16 O -0.427 6.427 17 C -0.081 4.081 18 H 0.131 0.869 19 C -0.137 4.137 20 C -0.159 4.159 21 C -0.115 4.115 22 C -0.121 4.121 23 C -0.103 4.103 24 C -0.194 4.194 25 C -0.052 4.052 26 N -0.192 5.192 27 C 0.006 3.994 28 C 0.001 3.999 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.041 0.959 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.246 0.754 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.175 0.825 44 H 0.058 0.942 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 26.030 1.133 1.349 26.089 hybrid contribution 1.290 1.837 0.121 2.248 sum 27.320 2.970 1.470 27.520 Atomic orbital electron populations 1.69853 1.05525 1.26447 1.53666 1.24991 0.95155 0.97314 1.00368 0.86954 0.79127 0.84801 0.77666 1.21269 1.23192 1.20377 1.18667 0.84351 0.95450 1.38016 0.89067 1.44811 1.09878 1.22107 1.56771 1.21954 0.93743 0.92474 0.93291 1.23019 0.98521 0.98628 0.97350 1.21953 0.89532 0.95761 0.90184 0.89160 1.46034 1.36514 1.11051 1.41011 1.19992 0.80685 0.87360 0.80737 1.90672 1.70566 1.13741 1.67731 1.20246 0.95016 0.96516 0.96342 0.86860 1.21406 0.96885 0.96450 0.98993 1.21617 0.96274 1.00535 0.97499 1.20461 0.97824 0.99123 0.94132 1.20414 0.93894 0.98869 0.98964 1.21581 1.00175 0.94417 0.94160 1.22124 0.96645 1.01333 0.99272 1.22687 0.91192 0.94312 0.97000 1.67390 1.40618 1.06383 1.04787 1.20587 0.91039 0.94695 0.93117 1.21751 0.87915 0.92597 0.97611 0.92810 0.92196 0.95927 0.90942 0.89846 0.75367 0.89972 0.90295 0.91324 0.90537 0.90446 0.90185 0.84852 0.84709 0.82466 0.94152 0.94777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.65 13.97 55.49 0.78 -27.87 16 2 C 0.02 0.59 5.43 -17.43 -0.09 0.49 16 3 Si 0.88 22.95 24.27 -169.99 -4.13 18.83 16 4 H -0.29 -7.08 6.49 56.52 0.37 -6.71 16 5 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 6 H -0.28 -7.11 6.66 56.52 0.38 -6.73 16 7 C -0.24 -6.96 10.57 -15.06 -0.16 -7.12 16 8 H 0.09 2.84 8.06 -52.49 -0.42 2.42 16 9 N -0.61 -15.23 3.21 -170.08 -0.55 -15.77 16 10 C 0.11 2.42 4.67 -2.53 -0.01 2.41 16 11 C -0.14 -2.33 6.64 -24.59 -0.16 -2.50 16 12 C 0.13 2.35 3.25 -66.10 -0.21 2.13 16 13 H 0.09 1.59 7.69 -51.93 -0.40 1.19 16 14 N -0.69 -11.64 4.51 -52.03 -0.23 -11.87 16 15 C 0.53 8.63 7.04 -10.98 -0.08 8.55 16 16 O -0.55 -10.45 15.55 5.56 0.09 -10.37 16 17 C -0.06 -0.75 2.70 -93.05 -0.25 -1.00 16 18 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 19 C -0.10 -1.05 4.65 -26.71 -0.12 -1.17 16 20 C -0.12 -0.92 5.99 -26.68 -0.16 -1.08 16 21 C -0.08 -0.56 5.68 -28.09 -0.16 -0.72 16 22 C -0.12 -1.14 5.74 -104.60 -0.60 -1.74 16 23 C -0.08 -0.62 9.75 -39.17 -0.38 -1.00 16 24 C -0.17 -1.39 10.12 -39.52 -0.40 -1.79 16 25 C 0.11 1.07 11.19 -17.69 -0.20 0.87 16 26 N -0.48 -6.05 7.62 -9.51 -0.07 -6.12 16 27 C 0.14 1.68 6.20 -82.44 -0.51 1.17 16 28 C 0.13 2.76 6.98 -3.07 -0.02 2.74 16 29 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 30 H 0.06 1.40 6.63 -51.93 -0.34 1.05 16 31 H 0.02 0.52 5.58 -51.93 -0.29 0.23 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.41 6.69 7.04 -40.82 -0.29 6.40 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.92 7.77 -51.93 -0.40 0.52 16 37 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.42 8.13 -51.93 -0.42 0.00 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.03 0.78 8.04 -51.93 -0.42 0.37 16 LS Contribution 352.50 15.07 5.31 5.31 Total: -1.00 -34.82 352.50 -9.16 -43.98 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.83 Total: 3.62 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -3.53 Total: 0.26 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -0.08 Total: -61.64 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.13 Total: 18.83 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.82 -9.16 -43.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015594560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.261 kcal (2) G-P(sol) polarization free energy of solvation -34.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds