Wall clock time and date at job start Tue Mar 31 2020 11:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00012 * 2 1 4 4 H 1.48495 * 109.47385 * 264.53985 * 3 2 1 5 5 H 1.48504 * 109.47053 * 24.54167 * 3 2 1 6 6 H 1.48501 * 109.46745 * 144.54140 * 3 2 1 7 7 C 1.38810 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99928 * 337.62233 * 7 2 1 9 9 N 1.36936 * 120.00126 * 157.62767 * 7 2 1 10 10 C 1.47430 * 125.64675 * 341.47459 * 9 7 2 11 11 C 1.54904 * 104.83293 * 204.16746 * 10 9 7 12 12 C 1.55157 * 101.58119 * 322.99243 * 11 10 9 13 13 H 1.09007 * 110.87211 * 153.93578 * 12 11 10 14 14 N 1.46501 * 110.71986 * 277.13773 * 12 11 10 15 15 C 1.34781 * 119.99589 * 199.97608 * 14 12 11 16 16 O 1.21273 * 120.00213 * 0.02562 * 15 14 12 17 17 C 1.50701 * 119.99469 * 179.97438 * 15 14 12 18 18 H 1.09004 * 109.22200 * 59.45902 * 17 15 14 19 19 C 1.52721 * 109.25211 * 178.91009 * 17 15 14 20 20 C 1.53323 * 108.45158 * 171.58241 * 19 17 15 21 21 C 1.52778 * 108.35988 * 290.18587 * 20 19 17 22 22 C 1.50500 * 110.61093 * 50.69389 * 21 20 19 23 23 C 1.39183 * 117.97543 * 162.29761 * 22 21 20 24 24 C 1.38412 * 118.86156 * 179.62807 * 23 22 21 25 25 C 1.38233 * 118.84388 * 0.27075 * 24 23 22 26 26 N 1.31518 * 120.61209 * 0.16484 * 25 24 23 27 27 C 1.32701 * 122.39545 * 359.91117 * 26 25 24 28 28 C 1.47025 * 125.65323 * 161.52361 * 9 7 2 29 29 H 0.97002 * 119.99647 * 359.97438 * 1 2 3 30 30 H 1.09000 * 110.36665 * 323.00945 * 10 9 7 31 31 H 1.09000 * 110.36239 * 85.32743 * 10 9 7 32 32 H 1.09001 * 111.00807 * 204.91752 * 11 10 9 33 33 H 1.09003 * 111.00304 * 81.06959 * 11 10 9 34 34 H 0.96994 * 120.00291 * 19.97951 * 14 12 11 35 35 H 1.09004 * 109.63915 * 291.26763 * 19 17 15 36 36 H 1.08996 * 109.63987 * 51.89022 * 19 17 15 37 37 H 1.08994 * 109.68897 * 49.90680 * 20 19 17 38 38 H 1.09004 * 109.68362 * 170.47886 * 20 19 17 39 39 H 1.08997 * 109.25855 * 171.17627 * 21 20 19 40 40 H 1.08996 * 109.26282 * 290.66695 * 21 20 19 41 41 H 1.07998 * 120.56871 * 359.90463 * 23 22 21 42 42 H 1.07999 * 120.57438 * 180.25582 * 24 23 22 43 43 H 1.08001 * 119.69687 * 180.17543 * 25 24 23 44 44 H 1.08996 * 109.87922 * 59.48426 * 28 9 7 45 45 H 1.09001 * 109.87829 * 298.32117 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6131 1.9798 -1.3936 5 1 1.3947 2.6832 0.5815 6 1 3.4853 1.4761 0.8122 7 6 2.0102 -1.2022 -0.0005 8 1 1.5312 -2.1024 0.3551 9 7 3.3023 -1.2467 -0.4519 10 6 3.9506 -0.2322 -1.3029 11 6 5.0951 -0.9896 -2.0210 12 6 5.5797 -1.9524 -0.9050 13 1 6.0405 -2.8427 -1.3332 14 7 6.5116 -1.2721 -0.0022 15 6 7.3480 -1.9928 0.7709 16 8 7.3296 -3.2043 0.7188 17 6 8.3069 -1.2929 1.6992 18 1 7.7428 -0.6809 2.4031 19 6 9.1120 -2.3360 2.4715 20 6 10.2204 -1.6159 3.2483 21 6 11.2482 -1.0924 2.2464 22 6 10.5710 -0.3151 1.1499 23 6 11.3526 0.5368 0.3750 24 6 10.7500 1.2547 -0.6435 25 6 9.3917 1.1047 -0.8519 26 7 8.6831 0.2967 -0.0938 27 6 9.2224 -0.4075 0.8932 28 6 4.2726 -2.3145 -0.1691 29 1 -0.4850 0.8401 0.0004 30 1 3.2412 0.1619 -2.0307 31 1 4.3547 0.5741 -0.6908 32 1 5.8897 -0.3056 -2.3191 33 1 4.7176 -1.5451 -2.8796 34 1 6.5265 -0.3032 0.0393 35 1 8.4584 -2.8612 3.1680 36 1 9.5556 -3.0464 1.7739 37 1 9.7951 -0.7825 3.8074 38 1 10.6997 -2.3132 3.9354 39 1 11.9575 -0.4462 2.7634 40 1 11.7831 -1.9343 1.8069 41 1 12.4119 0.6326 0.5622 42 1 11.3309 1.9205 -1.2644 43 1 8.9079 1.6561 -1.6446 44 1 3.8922 -3.2676 -0.5363 45 1 4.4555 -2.3744 0.9037 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015594560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:35 Heat of formation + Delta-G solvation = -2.115658 kcal Electronic energy + Delta-G solvation = -26931.362279 eV Core-core repulsion = 23333.955047 eV Total energy + Delta-G solvation = -3597.407232 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.02782 -40.64180 -39.15994 -37.28395 -35.49174 -34.51084 -33.70909 -31.56192 -31.30890 -30.78319 -29.51356 -26.41217 -25.52602 -24.22188 -24.09975 -22.66620 -22.01785 -21.21906 -20.66361 -19.05295 -18.33856 -17.62307 -17.61185 -17.20547 -17.12467 -16.48142 -15.87968 -15.78799 -15.35500 -15.14324 -15.10061 -14.87543 -14.59220 -14.46684 -13.97795 -13.81479 -13.69361 -13.46299 -13.32691 -13.21754 -12.99945 -12.89780 -12.67030 -12.36886 -12.12106 -12.04253 -11.86214 -11.83802 -11.50890 -11.45046 -11.01171 -10.84049 -10.56966 -10.32372 -10.00299 -9.69210 -9.09112 -8.20020 -5.47465 0.13613 0.35331 1.28327 1.37563 1.47085 1.61496 2.23699 2.39607 2.83338 3.02152 3.16702 3.28557 3.49056 3.63723 3.79412 3.85328 3.87062 3.88580 4.11801 4.16158 4.16537 4.27130 4.35504 4.38505 4.42642 4.54997 4.55673 4.68908 4.77141 4.84872 4.89880 4.90221 4.94366 4.96345 4.97664 5.11583 5.14381 5.19841 5.28412 5.38465 5.40179 5.61361 5.64340 5.79547 6.07147 6.62474 6.73177 7.00933 7.29332 7.50398 8.06689 9.00089 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017702 B = 0.003954 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.348065 B = 7079.702589 C = 7650.694027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.036 4.036 3 Si 0.952 3.048 4 H -0.261 1.261 5 H -0.307 1.307 6 H -0.272 1.272 7 C -0.241 4.241 8 H 0.053 0.947 9 N -0.623 5.623 10 C 0.104 3.896 11 C -0.116 4.116 12 C 0.142 3.858 13 H 0.098 0.902 14 N -0.693 5.693 15 C 0.523 3.477 16 O -0.582 6.582 17 C -0.054 4.054 18 H 0.113 0.887 19 C -0.097 4.097 20 C -0.115 4.115 21 C -0.076 4.076 22 C -0.123 4.123 23 C -0.078 4.078 24 C -0.165 4.165 25 C 0.088 3.912 26 N -0.514 5.514 27 C 0.112 3.888 28 C 0.126 3.874 29 H 0.264 0.736 30 H 0.048 0.952 31 H 0.025 0.975 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.412 0.588 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.166 0.834 42 H 0.165 0.835 43 H 0.173 0.827 44 H 0.035 0.965 45 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.423 3.994 0.837 31.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.230 4.230 3 Si 0.780 3.220 4 H -0.187 1.187 5 H -0.236 1.236 6 H -0.197 1.197 7 C -0.369 4.369 8 H 0.071 0.929 9 N -0.350 5.350 10 C -0.021 4.021 11 C -0.155 4.155 12 C 0.036 3.964 13 H 0.116 0.884 14 N -0.344 5.344 15 C 0.309 3.691 16 O -0.463 6.463 17 C -0.076 4.076 18 H 0.131 0.869 19 C -0.135 4.135 20 C -0.152 4.152 21 C -0.114 4.114 22 C -0.125 4.125 23 C -0.104 4.104 24 C -0.184 4.184 25 C -0.071 4.071 26 N -0.223 5.223 27 C -0.023 4.023 28 C 0.000 4.000 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.251 0.749 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.105 0.895 41 H 0.183 0.817 42 H 0.183 0.817 43 H 0.190 0.810 44 H 0.053 0.947 45 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 30.291 3.143 0.666 30.461 hybrid contribution -0.030 1.123 0.325 1.170 sum 30.260 4.266 0.991 30.576 Atomic orbital electron populations 1.69981 1.07277 1.27391 1.55691 1.25657 0.95848 1.00853 1.00655 0.85865 0.77584 0.79705 0.78866 1.18687 1.23572 1.19746 1.18573 0.86278 0.94397 1.37653 0.92920 1.44869 1.09122 1.23646 1.57407 1.22088 0.94772 0.92335 0.92859 1.22964 0.97426 0.98347 0.96731 1.21756 0.87847 0.96626 0.90132 0.88381 1.46047 1.36168 1.11181 1.41007 1.20725 0.80654 0.87112 0.80580 1.90645 1.71534 1.15288 1.68801 1.20230 0.94718 0.96923 0.95727 0.86893 1.21390 0.97541 0.95973 0.98597 1.21602 0.95384 1.00686 0.97562 1.20538 0.97773 0.99568 0.93489 1.20696 0.93091 0.99052 0.99636 1.21994 1.01595 0.93380 0.93447 1.22484 0.96042 1.00865 0.99057 1.23080 0.92384 0.94345 0.97276 1.67266 1.41954 1.07447 1.05641 1.20499 0.91974 0.95783 0.94033 1.21831 0.89406 0.91681 0.97037 0.92751 0.93413 0.95703 0.87464 0.88429 0.74924 0.90927 0.91717 0.91066 0.88639 0.87895 0.89469 0.81674 0.81704 0.80981 0.94725 0.96703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.00 13.97 21.65 0.30 -61.69 16 2 C -0.04 -2.17 5.43 84.86 0.46 -1.71 16 3 Si 0.95 47.71 24.27 68.60 1.66 49.37 16 4 H -0.26 -12.02 6.49 99.48 0.65 -11.37 16 5 H -0.31 -15.50 7.11 99.48 0.71 -14.79 16 6 H -0.27 -13.24 6.66 99.48 0.66 -12.57 16 7 C -0.24 -14.59 10.57 84.03 0.89 -13.71 16 8 H 0.05 3.50 8.06 -2.91 -0.02 3.48 16 9 N -0.62 -31.57 3.21 -692.00 -2.22 -33.79 16 10 C 0.10 4.39 4.67 86.85 0.41 4.80 16 11 C -0.12 -3.69 6.64 31.98 0.21 -3.48 16 12 C 0.14 4.98 3.25 46.18 0.15 5.13 16 13 H 0.10 3.35 7.69 -2.38 -0.02 3.33 16 14 N -0.69 -22.73 4.51 -436.92 -1.97 -24.70 16 15 C 0.52 17.15 7.04 87.66 0.62 17.77 16 16 O -0.58 -22.61 15.55 -3.01 -0.05 -22.65 16 17 C -0.05 -1.35 2.70 -12.37 -0.03 -1.39 16 18 H 0.11 2.71 8.14 -2.38 -0.02 2.69 16 19 C -0.10 -2.01 4.65 30.61 0.14 -1.86 16 20 C -0.12 -1.49 5.99 30.63 0.18 -1.31 16 21 C -0.08 -0.84 5.68 29.71 0.17 -0.68 16 22 C -0.12 -2.01 5.74 -19.85 -0.11 -2.12 16 23 C -0.08 -0.94 9.75 22.54 0.22 -0.72 16 24 C -0.17 -2.01 10.12 22.31 0.23 -1.78 16 25 C 0.09 1.52 11.19 84.74 0.95 2.47 16 26 N -0.51 -11.96 7.62 -184.01 -1.40 -13.37 16 27 C 0.11 2.50 6.20 42.28 0.26 2.77 16 28 C 0.13 5.59 6.98 86.73 0.61 6.20 16 29 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 30 H 0.05 2.14 6.63 -2.39 -0.02 2.13 16 31 H 0.03 1.07 5.58 -2.39 -0.01 1.06 16 32 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.41 13.00 7.04 -92.71 -0.65 12.35 16 35 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.06 1.51 7.77 -2.39 -0.02 1.49 16 37 H 0.07 0.90 8.10 -2.39 -0.02 0.88 16 38 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.10 0.65 8.13 -2.39 -0.02 0.63 16 40 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 41 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 42 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 43 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 44 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.01 0.71 8.04 -2.39 -0.02 0.69 16 Total: -1.00 -78.70 352.50 1.91 -76.79 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.24 Total: 19.66 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 5.34 Total: 10.38 kcal Atomic # 7 Polarization: -128.26 SS G_CDS: -5.29 Total: -133.55 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.05 Total: -22.65 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 1.66 Total: 49.37 kcal Total: -78.70 1.91 -76.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015594560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.678 kcal (2) G-P(sol) polarization free energy of solvation -78.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds