Wall clock time and date at job start Tue Mar 31 2020 12:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00284 * 2 1 4 4 H 1.48494 * 109.47211 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46972 * 300.00293 * 3 2 1 6 6 H 1.48508 * 109.46950 * 59.99881 * 3 2 1 7 7 C 1.38815 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99707 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99956 * 0.02562 * 7 2 1 10 10 C 1.47023 * 125.64700 * 0.02562 * 9 7 2 11 11 C 1.54331 * 107.27025 * 178.90575 * 10 9 7 12 12 C 1.55156 * 103.10257 * 337.72081 * 11 10 9 13 13 H 1.08999 * 111.00371 * 277.51561 * 12 11 10 14 14 N 1.46501 * 111.00459 * 153.66205 * 12 11 10 15 15 C 1.34777 * 120.00065 * 154.99903 * 14 12 11 16 16 O 1.21282 * 119.99749 * 0.02562 * 15 14 12 17 17 C 1.50698 * 119.99730 * 179.97438 * 15 14 12 18 18 N 1.46896 * 109.46851 * 185.53085 * 17 15 14 19 19 C 1.47909 * 111.00007 * 75.83440 * 18 17 15 20 20 C 1.54598 * 102.63338 * 94.67735 * 19 18 17 21 21 C 1.51579 * 102.81543 * 25.60042 * 20 19 18 22 22 C 1.37915 * 131.56071 * 163.82350 * 21 20 19 23 23 C 1.38303 * 120.07566 * 180.22958 * 22 21 20 24 24 C 1.38308 * 119.88663 * 0.02562 * 23 22 21 25 25 C 1.37909 * 120.26268 * 359.88828 * 24 23 22 26 26 C 1.38961 * 107.94604 * 343.80757 * 21 20 19 27 27 C 1.47421 * 125.65147 * 179.97438 * 9 7 2 28 28 H 0.97002 * 119.99990 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.88250 * 59.49534 * 10 9 7 30 30 H 1.08996 * 109.88770 * 298.32415 * 10 9 7 31 31 H 1.09002 * 110.71655 * 96.17249 * 11 10 9 32 32 H 1.08995 * 110.71984 * 219.26412 * 11 10 9 33 33 H 0.97002 * 119.99772 * 335.00387 * 14 12 11 34 34 H 1.09002 * 109.47454 * 305.53306 * 17 15 14 35 35 H 1.08997 * 109.47091 * 65.53750 * 17 15 14 36 36 H 1.09004 * 110.77568 * 212.96817 * 19 18 17 37 37 H 1.08999 * 110.77446 * 336.38976 * 19 18 17 38 38 H 1.09000 * 110.74189 * 143.93257 * 20 19 18 39 39 H 1.08998 * 110.74329 * 267.26955 * 20 19 18 40 40 H 1.07991 * 119.96317 * 0.25702 * 22 21 20 41 41 H 1.08000 * 120.05900 * 179.97438 * 23 22 21 42 42 H 1.07994 * 119.86646 * 179.87064 * 24 23 22 43 43 H 1.07995 * 119.90357 * 179.97438 * 25 24 23 44 44 H 1.08998 * 110.37056 * 323.00519 * 27 9 7 45 45 H 1.09010 * 110.36428 * 85.32143 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1375 -2.5327 -0.0005 11 6 -0.4485 -4.0441 -0.0282 12 6 0.8497 -4.6596 -0.6141 13 1 0.8544 -4.5987 -1.7024 14 7 1.0228 -6.0439 -0.1670 15 6 1.7499 -6.9050 -0.9061 16 8 2.2614 -6.5335 -1.9412 17 6 1.9284 -8.3288 -0.4459 18 7 2.8609 -9.0209 -1.3454 19 6 4.2568 -8.6100 -1.0802 20 6 4.7529 -9.7054 -0.1086 21 6 3.8649 -10.8853 -0.4504 22 6 3.9786 -12.2294 -0.1632 23 6 3.0137 -13.1165 -0.6046 24 6 1.9346 -12.6535 -1.3354 25 6 1.8154 -11.3102 -1.6238 26 6 2.7817 -10.4091 -1.1791 27 6 1.9334 -3.7311 0.0005 28 1 -0.4850 0.8401 0.0004 29 1 -0.5569 -2.0518 -0.8843 30 1 -0.5550 -2.0848 0.9012 31 1 -0.6324 -4.4185 0.9788 32 1 -1.3000 -4.2508 -0.6765 33 1 0.6139 -6.3409 0.6610 34 1 2.3290 -8.3355 0.5679 35 1 0.9650 -8.8384 -0.4593 36 1 4.8424 -8.6143 -1.9995 37 1 4.2875 -7.6292 -0.6056 38 1 5.7999 -9.9428 -0.2967 39 1 4.6055 -9.3985 0.9269 40 1 4.8217 -12.5896 0.4075 41 1 3.1032 -14.1691 -0.3799 42 1 1.1824 -13.3468 -1.6817 43 1 0.9706 -10.9551 -2.1952 44 1 2.8333 -3.7403 -0.6143 45 1 2.1657 -4.0424 1.0191 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016291485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:44 Heat of formation + Delta-G solvation = 19.402898 kcal Electronic energy + Delta-G solvation = -25653.446059 eV Core-core repulsion = 22056.971941 eV Total energy + Delta-G solvation = -3596.474118 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.94739 -40.61406 -38.89714 -37.51983 -35.58367 -33.84814 -33.32953 -31.33333 -30.81616 -29.85431 -29.06111 -27.52910 -26.21363 -24.01031 -22.69949 -22.13557 -22.07663 -21.70398 -21.19341 -19.03303 -18.21639 -17.76884 -17.19502 -17.15587 -16.66653 -16.24718 -16.20066 -16.01945 -15.71840 -15.16026 -14.72462 -14.61418 -14.32041 -14.16203 -14.00953 -13.85829 -13.70936 -13.55646 -13.27378 -13.02052 -12.92900 -12.79021 -12.43271 -12.38800 -12.17300 -12.12501 -12.00728 -11.83401 -11.77266 -11.59359 -11.06103 -10.74345 -10.33710 -10.07611 -9.71280 -8.93542 -8.85562 -7.88188 -5.24344 0.36457 0.47479 1.44469 1.45944 1.56279 1.63588 1.97585 2.47939 2.71837 2.83442 3.30521 3.57822 3.67037 3.70539 3.77384 3.92647 3.99252 4.03999 4.13880 4.17948 4.21770 4.26704 4.30783 4.54841 4.55446 4.59163 4.70107 4.72227 4.74310 4.86107 4.91993 4.97372 4.99028 5.08942 5.17281 5.40927 5.41923 5.51795 5.54548 5.63056 5.63402 5.72276 5.80710 5.87262 6.17027 6.30421 6.62596 7.07565 7.31433 7.73075 8.36359 9.22118 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.032616 B = 0.002385 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.280666 B =11737.640273 C =12280.573015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.980 3.020 4 H -0.268 1.268 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.245 4.245 8 H 0.078 0.922 9 N -0.627 5.627 10 C 0.184 3.816 11 C -0.128 4.128 12 C 0.148 3.852 13 H 0.071 0.929 14 N -0.702 5.702 15 C 0.510 3.490 16 O -0.567 6.567 17 C 0.051 3.949 18 N -0.497 5.497 19 C 0.055 3.945 20 C -0.104 4.104 21 C -0.149 4.149 22 C -0.096 4.096 23 C -0.132 4.132 24 C -0.106 4.106 25 C -0.125 4.125 26 C 0.069 3.931 27 C 0.129 3.871 28 H 0.249 0.751 29 H 0.012 0.988 30 H 0.018 0.982 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.417 0.583 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.139 0.861 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.125 0.875 44 H 0.023 0.977 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.640 -29.075 3.461 29.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.808 3.192 4 H -0.193 1.193 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.374 4.374 8 H 0.096 0.904 9 N -0.353 5.353 10 C 0.058 3.942 11 C -0.166 4.166 12 C 0.041 3.959 13 H 0.090 0.910 14 N -0.356 5.356 15 C 0.296 3.704 16 O -0.444 6.444 17 C -0.078 4.078 18 N -0.214 5.214 19 C -0.072 4.072 20 C -0.142 4.142 21 C -0.152 4.152 22 C -0.114 4.114 23 C -0.150 4.150 24 C -0.124 4.124 25 C -0.145 4.145 26 C -0.027 4.027 27 C 0.003 3.997 28 H 0.058 0.942 29 H 0.030 0.970 30 H 0.036 0.964 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.255 0.745 34 H 0.113 0.887 35 H 0.143 0.857 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.157 0.843 41 H 0.168 0.832 42 H 0.167 0.833 43 H 0.143 0.857 44 H 0.042 0.958 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.814 -28.391 2.203 28.731 hybrid contribution 0.346 1.312 0.721 1.536 sum 4.159 -27.079 2.923 27.552 Atomic orbital electron populations 1.70168 1.06164 1.25376 1.58075 1.25665 0.96739 1.00990 1.02381 0.84987 0.78053 0.79260 0.76881 1.19263 1.21832 1.21433 1.19454 0.90896 0.83731 1.43316 0.90440 1.44688 1.02721 1.00800 1.87140 1.20947 0.83453 0.91462 0.98309 1.22988 0.96334 0.95171 1.02156 1.21818 0.95455 0.80270 0.98372 0.91032 1.45714 1.53470 1.09508 1.26875 1.21060 0.77634 0.88067 0.83597 1.90722 1.48815 1.79243 1.25653 1.22059 0.99592 0.90476 0.95688 1.59587 1.06965 1.02870 1.51943 1.23093 0.86668 0.98186 0.99238 1.21701 1.00290 0.91810 1.00401 1.21220 0.98579 0.95800 0.99602 1.20709 0.99927 0.90955 0.99809 1.21431 0.94067 1.00742 0.98774 1.21247 0.98831 0.94413 0.97913 1.20739 0.99323 0.92905 1.01484 1.19710 0.97017 0.88450 0.97496 1.22007 0.95089 0.85222 0.97420 0.94209 0.97006 0.96394 0.88859 0.89477 0.74526 0.88686 0.85673 0.90224 0.90534 0.88208 0.88920 0.84310 0.83217 0.83314 0.85742 0.95824 0.94844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.56 10.31 21.65 0.22 -57.33 16 2 C -0.06 -3.76 5.49 84.86 0.47 -3.29 16 3 Si 0.98 46.70 29.55 68.60 2.03 48.73 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 7 C -0.25 -14.22 10.28 84.03 0.86 -13.36 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 9 N -0.63 -33.21 3.40 -691.02 -2.35 -35.56 16 10 C 0.18 9.02 5.37 86.73 0.47 9.48 16 11 C -0.13 -4.38 6.58 31.79 0.21 -4.17 16 12 C 0.15 5.22 3.44 46.55 0.16 5.38 16 13 H 0.07 2.95 7.54 -2.39 -0.02 2.93 16 14 N -0.70 -18.01 5.21 -435.19 -2.27 -20.28 16 15 C 0.51 14.24 7.30 87.66 0.64 14.88 16 16 O -0.57 -21.81 15.61 -3.04 -0.05 -21.86 16 17 C 0.05 1.00 5.23 85.56 0.45 1.45 16 18 N -0.50 -11.72 4.59 -692.96 -3.18 -14.90 16 19 C 0.05 1.21 6.36 86.65 0.55 1.76 16 20 C -0.10 -1.66 6.93 30.67 0.21 -1.45 16 21 C -0.15 -2.64 6.23 -19.49 -0.12 -2.76 16 22 C -0.10 -1.33 10.03 22.21 0.22 -1.11 16 23 C -0.13 -1.58 10.06 22.30 0.22 -1.35 16 24 C -0.11 -1.40 10.02 22.21 0.22 -1.17 16 25 C -0.12 -2.21 10.04 22.48 0.23 -1.98 16 26 C 0.07 1.42 5.50 38.29 0.21 1.63 16 27 C 0.13 5.56 6.95 87.02 0.60 6.17 16 28 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.01 0.65 7.38 -2.38 -0.02 0.63 16 30 H 0.02 0.97 7.51 -2.39 -0.02 0.95 16 31 H 0.09 2.63 8.00 -2.39 -0.02 2.61 16 32 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.42 7.38 8.57 -92.71 -0.79 6.58 16 34 H 0.10 1.44 7.95 -2.39 -0.02 1.43 16 35 H 0.13 1.97 7.95 -2.39 -0.02 1.95 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.08 1.80 7.30 -2.39 -0.02 1.78 16 38 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.14 1.33 8.06 -2.92 -0.02 1.31 16 41 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 42 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 43 H 0.12 2.10 8.06 -2.91 -0.02 2.07 16 44 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.03 1.35 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -76.72 365.23 0.21 -76.51 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.19 Total: 14.59 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 5.60 Total: 10.10 kcal Atomic # 7 Polarization: -120.50 SS G_CDS: -7.57 Total: -128.07 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.05 Total: -21.86 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -76.72 0.21 -76.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016291485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.917 kcal (2) G-P(sol) polarization free energy of solvation -76.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds