Wall clock time and date at job start Tue Mar 31 2020 11:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 120.00321 * 2 1 4 4 H 1.48499 * 109.46850 * 274.54195 * 3 2 1 5 5 H 1.48494 * 109.46759 * 34.54003 * 3 2 1 6 6 H 1.48491 * 109.47032 * 154.54190 * 3 2 1 7 7 C 1.38819 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99946 * 197.42464 * 7 2 1 9 9 N 1.36938 * 119.99716 * 17.42235 * 7 2 1 10 10 C 1.47167 * 120.70910 * 26.76894 * 9 7 2 11 11 C 1.53886 * 108.02994 * 132.73343 * 10 9 7 12 12 H 1.09005 * 112.57574 * 182.21660 * 11 10 9 13 13 C 1.54546 * 107.83095 * 306.49705 * 11 10 9 14 14 C 1.54280 * 104.94080 * 89.01730 * 13 11 10 15 15 C 1.54791 * 104.73202 * 0.08428 * 14 13 11 16 16 H 1.09000 * 112.68886 * 146.64189 * 15 14 13 17 17 C 1.47158 * 120.70883 * 206.74331 * 9 7 2 18 18 N 1.48306 * 107.21117 * 58.35925 * 11 10 9 19 19 C 1.34767 * 128.08116 * 106.70353 * 18 11 10 20 20 O 1.21692 * 119.99941 * 358.04984 * 19 18 11 21 21 C 1.46683 * 120.00331 * 178.05301 * 19 18 11 22 22 C 1.37752 * 126.22481 * 198.12947 * 21 19 18 23 23 C 1.40105 * 107.10633 * 179.97438 * 22 21 19 24 24 C 1.35330 * 107.92807 * 0.02562 * 23 22 21 25 25 N 1.36004 * 108.67861 * 359.76118 * 24 23 22 26 26 H 0.96995 * 125.63096 * 180.26487 * 25 24 23 27 27 C 1.51512 * 110.12629 * 179.97438 * 24 23 22 28 28 C 1.54402 * 105.02552 * 17.01140 * 27 24 23 29 29 C 1.51354 * 141.74414 * 180.02562 * 23 22 21 30 30 H 0.97002 * 119.99760 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.75100 * 13.10103 * 10 9 7 32 32 H 1.08997 * 109.74605 * 252.36321 * 10 9 7 33 33 H 1.09002 * 110.36599 * 207.91205 * 13 11 10 34 34 H 1.08993 * 110.36501 * 330.11970 * 13 11 10 35 35 H 1.08999 * 110.36581 * 118.90875 * 14 13 11 36 36 H 1.09007 * 110.35764 * 241.21544 * 14 13 11 37 37 H 1.08998 * 109.75232 * 107.63614 * 17 9 7 38 38 H 1.09003 * 109.79233 * 346.92486 * 17 9 7 39 39 H 1.08001 * 126.45054 * 359.96193 * 22 21 19 40 40 H 1.08993 * 110.32768 * 135.89771 * 27 24 23 41 41 H 1.08999 * 110.32892 * 258.12362 * 27 24 23 42 42 H 1.09006 * 110.92038 * 92.33393 * 28 27 24 43 43 H 1.09001 * 110.91947 * 215.93783 * 28 27 24 44 44 H 1.09002 * 110.33341 * 281.88552 * 29 23 22 45 45 H 1.08998 * 110.33550 * 44.12859 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4018 2.1018 -1.3957 5 1 1.4991 2.6230 0.7938 6 1 3.5925 1.4143 0.6018 7 6 2.0103 -1.2022 -0.0005 8 1 3.0531 -1.2238 0.2795 9 7 1.3726 -2.3607 -0.3561 10 6 0.2146 -2.3331 -1.2639 11 6 0.4246 -3.4159 -2.3370 12 1 -0.3770 -3.4342 -3.0754 13 6 1.8082 -3.1794 -2.9835 14 6 2.7960 -3.9865 -2.1156 15 6 1.9162 -4.6402 -1.0225 16 1 2.2834 -5.6202 -0.7176 17 6 1.8311 -3.6600 0.1608 18 7 0.5654 -4.7123 -1.6306 19 6 -0.3260 -5.7205 -1.5581 20 8 -1.4155 -5.6087 -2.0887 21 6 0.0169 -6.9524 -0.8395 22 6 -0.6137 -8.1706 -0.9655 23 6 0.0351 -9.0619 -0.1007 24 6 1.0278 -8.3874 0.5245 25 7 1.0294 -7.1025 0.0787 26 1 1.6426 -6.4066 0.3627 27 6 1.7646 -9.3079 1.4761 28 6 1.3752 -10.7352 1.0342 29 6 0.0033 -10.5017 0.3648 30 1 -0.4850 0.8401 0.0004 31 1 0.1413 -1.3542 -1.7377 32 1 -0.6972 -2.5413 -0.7040 33 1 1.8157 -3.5482 -4.0092 34 1 2.0615 -2.1196 -2.9604 35 1 3.2893 -4.7520 -2.7145 36 1 3.5337 -3.3231 -1.6642 37 1 1.1214 -4.0341 0.8986 38 1 2.8141 -3.5491 0.6185 39 1 -1.4509 -8.3963 -1.6094 40 1 2.8411 -9.1637 1.3849 41 1 1.4431 -9.1281 2.5019 42 1 2.0953 -11.1310 0.3180 43 1 1.2811 -11.3971 1.8951 44 1 -0.8000 -10.6486 1.0868 45 1 -0.1229 -11.1720 -0.4854 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018168563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:14 Heat of formation + Delta-G solvation = 63.419965 kcal Electronic energy + Delta-G solvation = -27319.440974 eV Core-core repulsion = 23724.875579 eV Total energy + Delta-G solvation = -3594.565394 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.65689 -39.97336 -37.68744 -36.03059 -34.19319 -31.48183 -31.34883 -30.83723 -30.43406 -27.89533 -27.32400 -26.27809 -23.82124 -23.67333 -22.37112 -21.03580 -20.41624 -20.17028 -19.14410 -18.67532 -17.41169 -16.41100 -15.99517 -15.77459 -15.21070 -15.01892 -14.58765 -14.49022 -13.70938 -13.62073 -13.38077 -13.13415 -13.07644 -12.92133 -12.90441 -12.67601 -12.19900 -12.04095 -11.87639 -11.60858 -11.40778 -11.31604 -11.22234 -11.10756 -10.92846 -10.65781 -10.56294 -10.43272 -10.07105 -9.96022 -9.78725 -9.63445 -8.72995 -8.63492 -8.35352 -7.84592 -6.81619 -5.90073 -3.34195 1.67214 2.71433 2.89916 3.28045 3.30264 3.37570 3.39318 3.65250 4.36348 4.41666 4.51561 4.71825 4.82301 4.89685 5.09672 5.15430 5.23443 5.26419 5.31152 5.42140 5.48784 5.56728 5.58278 5.65125 5.67925 5.73825 5.86548 5.91644 6.00193 6.03762 6.12711 6.21616 6.26899 6.28370 6.33621 6.46929 6.53063 6.58853 6.84237 6.86176 7.07600 7.20055 7.45286 7.47660 7.66569 7.98554 8.25887 8.50694 9.04818 9.67390 10.24502 11.18022 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.022717 B = 0.003670 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.241618 B = 7627.341824 C = 8050.000730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.007 3.993 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.260 4.260 8 H 0.069 0.931 9 N -0.583 5.583 10 C 0.173 3.827 11 C 0.107 3.893 12 H 0.091 0.909 13 C -0.113 4.113 14 C -0.108 4.108 15 C 0.096 3.904 16 H 0.078 0.922 17 C 0.133 3.867 18 N -0.605 5.605 19 C 0.603 3.397 20 O -0.540 6.540 21 C -0.026 4.026 22 C -0.098 4.098 23 C -0.197 4.197 24 C 0.005 3.995 25 N -0.522 5.522 26 H 0.416 0.584 27 C -0.041 4.041 28 C -0.114 4.114 29 C -0.048 4.048 30 H 0.256 0.744 31 H 0.092 0.908 32 H 0.027 0.973 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.017 0.983 38 H 0.066 0.934 39 H 0.143 0.857 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.993 -17.665 -0.215 18.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.193 4.193 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.389 4.389 8 H 0.087 0.913 9 N -0.306 5.306 10 C 0.047 3.953 11 C 0.004 3.996 12 H 0.109 0.891 13 C -0.151 4.151 14 C -0.146 4.146 15 C -0.010 4.010 16 H 0.096 0.904 17 C 0.006 3.994 18 N -0.338 5.338 19 C 0.392 3.608 20 O -0.418 6.418 21 C -0.139 4.139 22 C -0.124 4.124 23 C -0.203 4.203 24 C -0.113 4.113 25 N -0.122 5.122 26 H 0.259 0.741 27 C -0.079 4.079 28 C -0.152 4.152 29 C -0.085 4.085 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.035 0.965 38 H 0.084 0.916 39 H 0.161 0.839 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.314 -17.327 -0.445 18.129 hybrid contribution 0.637 1.349 0.267 1.515 sum 5.951 -15.978 -0.178 17.051 Atomic orbital electron populations 1.70049 1.05293 1.25812 1.53057 1.25068 0.95258 0.98507 1.00444 0.86261 0.79090 0.83631 0.77681 1.21326 1.21763 1.20381 1.19147 0.92713 0.84442 1.42588 0.91323 1.44006 1.34673 1.00728 1.51183 1.21277 0.89211 0.95901 0.88914 1.23275 0.97615 0.82870 0.95887 0.89051 1.22328 0.94039 1.01788 0.96945 1.22312 0.97679 0.98573 0.96059 1.23300 0.82837 0.98094 0.96730 0.90438 1.21506 0.98479 0.87639 0.91809 1.49147 1.16111 1.16843 1.51684 1.16572 0.83567 0.80543 0.80100 1.90811 1.21610 1.80504 1.48873 1.20316 0.95991 0.96430 1.01162 1.20579 1.00744 0.89877 1.01190 1.20242 1.00542 0.96622 1.02886 1.21257 1.02553 0.85018 1.02497 1.42129 1.27061 1.09695 1.33312 0.74110 1.20678 0.98984 0.91676 0.96530 1.22319 0.97168 0.95149 1.00597 1.20446 0.97001 0.91609 0.99482 0.93384 0.89033 0.95491 0.92868 0.89321 0.92729 0.89654 0.96512 0.91556 0.83885 0.90954 0.90016 0.90800 0.90263 0.91005 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.33 11.27 55.49 0.63 -24.70 16 2 C 0.01 0.18 4.91 -17.43 -0.09 0.10 16 3 Si 0.90 20.73 29.59 -169.99 -5.03 15.70 16 4 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.26 -6.58 9.62 -15.06 -0.14 -6.73 16 8 H 0.07 1.69 7.88 -52.49 -0.41 1.28 16 9 N -0.58 -13.50 2.28 -171.08 -0.39 -13.89 16 10 C 0.17 4.06 4.60 -3.22 -0.01 4.04 16 11 C 0.11 2.10 4.11 -65.66 -0.27 1.83 16 12 H 0.09 1.81 7.94 -51.93 -0.41 1.39 16 13 C -0.11 -1.91 6.18 -25.25 -0.16 -2.07 16 14 C -0.11 -1.66 6.20 -25.12 -0.16 -1.82 16 15 C 0.10 1.55 3.31 -65.52 -0.22 1.34 16 16 H 0.08 1.06 4.90 -51.93 -0.25 0.81 16 17 C 0.13 2.54 5.90 -3.22 -0.02 2.52 16 18 N -0.61 -11.32 2.74 -154.40 -0.42 -11.74 16 19 C 0.60 11.90 7.87 -12.86 -0.10 11.80 16 20 O -0.54 -12.28 17.26 5.20 0.09 -12.19 16 21 C -0.03 -0.44 6.80 -82.09 -0.56 -1.00 16 22 C -0.10 -1.53 10.70 -39.06 -0.42 -1.95 16 23 C -0.20 -2.60 6.89 -104.64 -0.72 -3.32 16 24 C 0.00 0.06 8.01 -81.38 -0.65 -0.60 16 25 N -0.52 -7.41 5.32 -5.43 -0.03 -7.43 16 26 H 0.42 5.42 5.65 -40.82 -0.23 5.19 16 27 C -0.04 -0.35 6.79 -26.75 -0.18 -0.53 16 28 C -0.11 -0.83 7.12 -25.25 -0.18 -1.01 16 29 C -0.05 -0.45 6.79 -26.82 -0.18 -0.63 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.09 2.34 6.39 -51.93 -0.33 2.00 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.63 7.84 -51.93 -0.41 1.22 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 1.35 7.84 -51.93 -0.41 0.94 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 1.16 7.97 -51.93 -0.41 0.75 16 39 H 0.14 2.15 8.06 -52.49 -0.42 1.72 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 349.78 15.07 5.27 5.27 Total: -1.00 -31.16 349.78 -10.60 -41.76 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.66 Total: 5.25 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -4.06 Total: 1.97 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -0.22 Total: -57.77 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.16 -10.60 -41.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018168563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.184 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds