Wall clock time and date at job start Tue Mar 31 2020 11:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 120.00321 * 2 1 4 4 H 1.48499 * 109.46850 * 274.54195 * 3 2 1 5 5 H 1.48494 * 109.46759 * 34.54003 * 3 2 1 6 6 H 1.48491 * 109.47032 * 154.54190 * 3 2 1 7 7 C 1.38819 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99946 * 197.42464 * 7 2 1 9 9 N 1.36938 * 119.99716 * 17.42235 * 7 2 1 10 10 C 1.47167 * 120.70910 * 26.76894 * 9 7 2 11 11 C 1.53886 * 108.02994 * 132.73343 * 10 9 7 12 12 H 1.09005 * 112.57574 * 182.21660 * 11 10 9 13 13 C 1.54546 * 107.83095 * 306.49705 * 11 10 9 14 14 C 1.54280 * 104.94080 * 89.01730 * 13 11 10 15 15 C 1.54791 * 104.73202 * 0.08428 * 14 13 11 16 16 H 1.09000 * 112.68886 * 146.64189 * 15 14 13 17 17 C 1.47158 * 120.70883 * 206.74331 * 9 7 2 18 18 N 1.48306 * 107.21117 * 58.35925 * 11 10 9 19 19 C 1.34767 * 128.08116 * 106.70353 * 18 11 10 20 20 O 1.21692 * 119.99941 * 358.04984 * 19 18 11 21 21 C 1.46683 * 120.00331 * 178.05301 * 19 18 11 22 22 C 1.37752 * 126.22481 * 198.12947 * 21 19 18 23 23 C 1.40105 * 107.10633 * 179.97438 * 22 21 19 24 24 C 1.35330 * 107.92807 * 0.02562 * 23 22 21 25 25 N 1.36004 * 108.67861 * 359.76118 * 24 23 22 26 26 H 0.96995 * 125.63096 * 180.26487 * 25 24 23 27 27 C 1.51512 * 110.12629 * 179.97438 * 24 23 22 28 28 C 1.54402 * 105.02552 * 17.01140 * 27 24 23 29 29 C 1.51354 * 141.74414 * 180.02562 * 23 22 21 30 30 H 0.97002 * 119.99760 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.75100 * 13.10103 * 10 9 7 32 32 H 1.08997 * 109.74605 * 252.36321 * 10 9 7 33 33 H 1.09002 * 110.36599 * 207.91205 * 13 11 10 34 34 H 1.08993 * 110.36501 * 330.11970 * 13 11 10 35 35 H 1.08999 * 110.36581 * 118.90875 * 14 13 11 36 36 H 1.09007 * 110.35764 * 241.21544 * 14 13 11 37 37 H 1.08998 * 109.75232 * 107.63614 * 17 9 7 38 38 H 1.09003 * 109.79233 * 346.92486 * 17 9 7 39 39 H 1.08001 * 126.45054 * 359.96193 * 22 21 19 40 40 H 1.08993 * 110.32768 * 135.89771 * 27 24 23 41 41 H 1.08999 * 110.32892 * 258.12362 * 27 24 23 42 42 H 1.09006 * 110.92038 * 92.33393 * 28 27 24 43 43 H 1.09001 * 110.91947 * 215.93783 * 28 27 24 44 44 H 1.09002 * 110.33341 * 281.88552 * 29 23 22 45 45 H 1.08998 * 110.33550 * 44.12859 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4018 2.1018 -1.3957 5 1 1.4991 2.6230 0.7938 6 1 3.5925 1.4143 0.6018 7 6 2.0103 -1.2022 -0.0005 8 1 3.0531 -1.2238 0.2795 9 7 1.3726 -2.3607 -0.3561 10 6 0.2146 -2.3331 -1.2639 11 6 0.4246 -3.4159 -2.3370 12 1 -0.3770 -3.4342 -3.0754 13 6 1.8082 -3.1794 -2.9835 14 6 2.7960 -3.9865 -2.1156 15 6 1.9162 -4.6402 -1.0225 16 1 2.2834 -5.6202 -0.7176 17 6 1.8311 -3.6600 0.1608 18 7 0.5654 -4.7123 -1.6306 19 6 -0.3260 -5.7205 -1.5581 20 8 -1.4155 -5.6087 -2.0887 21 6 0.0169 -6.9524 -0.8395 22 6 -0.6137 -8.1706 -0.9655 23 6 0.0351 -9.0619 -0.1007 24 6 1.0278 -8.3874 0.5245 25 7 1.0294 -7.1025 0.0787 26 1 1.6426 -6.4066 0.3627 27 6 1.7646 -9.3079 1.4761 28 6 1.3752 -10.7352 1.0342 29 6 0.0033 -10.5017 0.3648 30 1 -0.4850 0.8401 0.0004 31 1 0.1413 -1.3542 -1.7377 32 1 -0.6972 -2.5413 -0.7040 33 1 1.8157 -3.5482 -4.0092 34 1 2.0615 -2.1196 -2.9604 35 1 3.2893 -4.7520 -2.7145 36 1 3.5337 -3.3231 -1.6642 37 1 1.1214 -4.0341 0.8986 38 1 2.8141 -3.5491 0.6185 39 1 -1.4509 -8.3963 -1.6094 40 1 2.8411 -9.1637 1.3849 41 1 1.4431 -9.1281 2.5019 42 1 2.0953 -11.1310 0.3180 43 1 1.2811 -11.3971 1.8951 44 1 -0.8000 -10.6486 1.0868 45 1 -0.1229 -11.1720 -0.4854 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018168563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:13 Heat of formation + Delta-G solvation = 45.740734 kcal Electronic energy + Delta-G solvation = -27320.207603 eV Core-core repulsion = 23724.875579 eV Total energy + Delta-G solvation = -3595.332023 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.79649 -41.42431 -39.24885 -36.90769 -36.01151 -33.13449 -32.87630 -32.16409 -31.92256 -29.00584 -28.24406 -27.92195 -25.41333 -25.21249 -23.77351 -22.17387 -21.74364 -21.45663 -20.26165 -20.11855 -18.92126 -17.95580 -17.41975 -16.89142 -16.58636 -16.37854 -16.24177 -15.90703 -15.37253 -14.98095 -14.81677 -14.53161 -14.46838 -14.16710 -13.93027 -13.75793 -13.60014 -13.51394 -13.28375 -12.93943 -12.76797 -12.68272 -12.36527 -12.30664 -12.16257 -12.15105 -11.93532 -11.81928 -11.73059 -11.64060 -11.25718 -11.21006 -10.63676 -10.02933 -9.80301 -8.95334 -8.73226 -7.90224 -5.37446 0.39927 1.47640 1.49350 1.58097 1.63048 1.71826 1.92422 2.25764 2.48455 3.24218 3.31178 3.42346 3.59403 3.69891 3.76605 3.85793 3.96919 4.11648 4.21049 4.28324 4.30280 4.44996 4.47117 4.49114 4.61335 4.72372 4.73711 4.88069 4.90172 4.93500 4.96322 5.03256 5.04358 5.10986 5.13235 5.20971 5.28920 5.31995 5.47225 5.47391 5.49933 5.63704 5.78100 5.97281 6.28418 6.40860 6.51685 6.98150 7.04867 7.74181 8.29114 9.16602 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.022717 B = 0.003670 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.241618 B = 7627.341824 C = 8050.000730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.051 4.051 3 Si 0.969 3.031 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.261 1.261 7 C -0.255 4.255 8 H 0.084 0.916 9 N -0.594 5.594 10 C 0.189 3.811 11 C 0.108 3.892 12 H 0.081 0.919 13 C -0.105 4.105 14 C -0.101 4.101 15 C 0.106 3.894 16 H 0.112 0.888 17 C 0.130 3.870 18 N -0.607 5.607 19 C 0.597 3.403 20 O -0.586 6.586 21 C -0.062 4.062 22 C -0.105 4.105 23 C -0.214 4.214 24 C 0.020 3.980 25 N -0.519 5.519 26 H 0.420 0.580 27 C -0.041 4.041 28 C -0.105 4.105 29 C -0.050 4.050 30 H 0.248 0.752 31 H 0.063 0.937 32 H -0.025 1.025 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.000 1.000 38 H 0.091 0.909 39 H 0.137 0.863 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.078 0.922 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.590 -20.490 0.653 22.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.246 4.246 3 Si 0.797 3.203 4 H -0.213 1.213 5 H -0.231 1.231 6 H -0.185 1.185 7 C -0.385 4.385 8 H 0.101 0.899 9 N -0.317 5.317 10 C 0.062 3.938 11 C 0.004 3.996 12 H 0.099 0.901 13 C -0.143 4.143 14 C -0.139 4.139 15 C 0.002 3.998 16 H 0.129 0.871 17 C 0.003 3.997 18 N -0.339 5.339 19 C 0.389 3.611 20 O -0.467 6.467 21 C -0.174 4.174 22 C -0.132 4.132 23 C -0.220 4.220 24 C -0.099 4.099 25 N -0.120 5.120 26 H 0.263 0.737 27 C -0.079 4.079 28 C -0.142 4.142 29 C -0.087 4.087 30 H 0.057 0.943 31 H 0.082 0.918 32 H -0.007 1.007 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.018 0.982 38 H 0.109 0.891 39 H 0.155 0.845 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.102 0.898 43 H 0.124 0.876 44 H 0.096 0.904 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.975 -20.180 0.434 22.090 hybrid contribution -0.532 2.107 0.082 2.175 sum 8.443 -18.073 0.516 19.954 Atomic orbital electron populations 1.70235 1.07073 1.25883 1.55552 1.25849 0.95810 1.01784 1.01168 0.85225 0.78312 0.79433 0.77301 1.21285 1.23124 1.18533 1.19574 0.93283 0.85084 1.40548 0.89882 1.44182 1.34087 1.01969 1.51464 1.20873 0.87689 0.95852 0.89346 1.23033 0.99457 0.82452 0.94633 0.90061 1.22251 0.92256 1.01362 0.98441 1.22334 0.96922 0.99076 0.95556 1.23316 0.81792 0.99003 0.95685 0.87061 1.21708 0.98920 0.86265 0.92803 1.49201 1.17048 1.16068 1.51549 1.17053 0.82954 0.81447 0.79696 1.90765 1.23398 1.81595 1.50969 1.19879 0.98503 0.95503 1.03483 1.20789 1.00542 0.90417 1.01475 1.20723 1.00273 0.98704 1.02281 1.22152 1.02051 0.84042 1.01666 1.42035 1.26460 1.10617 1.32877 0.73660 1.20956 0.99866 0.91068 0.96019 1.22370 0.95571 0.94697 1.01612 1.20602 0.98921 0.89089 1.00103 0.94261 0.91840 1.00674 0.90444 0.90916 0.89389 0.89415 0.98184 0.89098 0.84510 0.88773 0.88593 0.89822 0.87586 0.90359 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.74 11.27 21.65 0.24 -55.50 16 2 C -0.05 -2.73 4.91 84.86 0.42 -2.31 16 3 Si 0.97 43.20 29.59 68.60 2.03 45.23 16 4 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.26 -12.93 9.62 84.04 0.81 -12.13 16 8 H 0.08 3.93 7.88 -2.91 -0.02 3.91 16 9 N -0.59 -27.96 2.28 -695.18 -1.58 -29.55 16 10 C 0.19 9.43 4.60 86.55 0.40 9.83 16 11 C 0.11 4.42 4.11 45.47 0.19 4.61 16 12 H 0.08 3.44 7.94 -2.38 -0.02 3.42 16 13 C -0.10 -3.46 6.18 31.55 0.19 -3.27 16 14 C -0.10 -2.81 6.20 31.64 0.20 -2.61 16 15 C 0.11 3.26 3.31 45.55 0.15 3.41 16 16 H 0.11 2.71 4.90 -2.39 -0.01 2.69 16 17 C 0.13 4.83 5.90 86.55 0.51 5.34 16 18 N -0.61 -23.03 2.74 -760.61 -2.09 -25.12 16 19 C 0.60 24.40 7.87 86.45 0.68 25.08 16 20 O -0.59 -28.31 17.26 -4.32 -0.07 -28.38 16 21 C -0.06 -2.09 6.80 40.34 0.27 -1.81 16 22 C -0.11 -3.30 10.70 22.61 0.24 -3.06 16 23 C -0.21 -5.25 6.89 -19.87 -0.14 -5.39 16 24 C 0.02 0.44 8.01 41.50 0.33 0.77 16 25 N -0.52 -13.82 5.32 -171.09 -0.91 -14.73 16 26 H 0.42 9.97 5.65 -92.71 -0.52 9.45 16 27 C -0.04 -0.52 6.79 30.58 0.21 -0.31 16 28 C -0.10 -1.02 7.12 31.55 0.22 -0.79 16 29 C -0.05 -0.78 6.79 30.54 0.21 -0.57 16 30 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 31 H 0.06 3.48 6.39 -2.39 -0.02 3.47 16 32 H -0.02 -1.46 8.14 -2.39 -0.02 -1.48 16 33 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.07 2.65 7.84 -2.39 -0.02 2.63 16 35 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 2.47 7.84 -2.38 -0.02 2.45 16 37 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.09 2.94 7.97 -2.39 -0.02 2.92 16 39 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 40 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 0.69 8.14 -2.38 -0.02 0.68 16 43 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -72.91 349.78 3.00 -69.92 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.48 Total: 21.34 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: 4.89 Total: 16.79 kcal Atomic # 7 Polarization: -120.56 SS G_CDS: -4.34 Total: -124.90 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.07 Total: -28.38 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -72.91 3.00 -69.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018168563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.657 kcal (2) G-P(sol) polarization free energy of solvation -72.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds