Wall clock time and date at job start Tue Mar 31 2020 12:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99777 * 2 1 4 4 H 1.48500 * 109.47374 * 90.00307 * 3 2 1 5 5 H 1.48503 * 109.47019 * 210.00210 * 3 2 1 6 6 H 1.48501 * 109.47415 * 330.00368 * 3 2 1 7 7 C 1.38811 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99915 * 359.97438 * 7 2 1 9 9 N 1.36933 * 119.99672 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99902 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.88193 * 322.56685 * 10 9 7 12 12 C 1.55155 * 111.00702 * 86.44927 * 10 9 7 13 13 C 1.54328 * 102.94257 * 153.57691 * 12 10 9 14 14 N 1.47026 * 107.27042 * 337.80853 * 13 12 10 15 15 C 1.34776 * 125.64959 * 178.89546 * 14 13 12 16 16 O 1.21279 * 120.00087 * 180.02562 * 15 14 13 17 17 C 1.50702 * 119.99747 * 0.02562 * 15 14 13 18 18 N 1.46897 * 109.47035 * 174.20189 * 17 15 14 19 19 C 1.47910 * 111.00055 * 284.26195 * 18 17 15 20 20 C 1.54604 * 102.62135 * 265.48443 * 19 18 17 21 21 C 1.51576 * 102.83629 * 334.46848 * 20 19 18 22 22 C 1.37921 * 131.56239 * 196.35084 * 21 20 19 23 23 C 1.38302 * 120.08172 * 179.28451 * 22 21 20 24 24 C 1.38307 * 119.88167 * 359.97438 * 23 22 21 25 25 C 1.37906 * 120.26397 * 0.12949 * 24 23 22 26 26 C 1.38959 * 107.95252 * 15.93124 * 21 20 19 27 27 C 1.47427 * 108.70266 * 358.93927 * 14 13 12 28 28 H 0.97001 * 120.00325 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00017 * 359.97438 * 9 7 2 30 30 H 1.08997 * 110.72052 * 271.93828 * 12 10 9 31 31 H 1.09008 * 110.71953 * 35.21481 * 12 10 9 32 32 H 1.08997 * 109.88247 * 97.22291 * 13 12 10 33 33 H 1.09000 * 109.88460 * 218.23919 * 13 12 10 34 34 H 1.08996 * 109.47119 * 294.20838 * 17 15 14 35 35 H 1.09005 * 109.46774 * 54.20874 * 17 15 14 36 36 H 1.08991 * 110.78073 * 23.76714 * 19 18 17 37 37 H 1.09003 * 110.77868 * 147.20734 * 19 18 17 38 38 H 1.08999 * 110.74133 * 216.13175 * 20 19 18 39 39 H 1.08995 * 110.89332 * 92.87840 * 20 19 18 40 40 H 1.07998 * 119.95965 * 359.27674 * 22 21 20 41 41 H 1.07994 * 120.06208 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.86493 * 180.14581 * 24 23 22 43 43 H 1.08007 * 119.89950 * 180.02562 * 25 24 23 44 44 H 1.08999 * 110.36488 * 265.28978 * 27 14 13 45 45 H 1.09000 * 110.36598 * 142.96567 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5477 1.4402 -0.7001 6 1 1.4475 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0022 11 1 3.6063 -3.2121 0.6165 12 6 4.3120 -2.9964 -1.4483 13 6 5.5898 -3.8538 -1.3309 14 7 6.3225 -3.3852 -0.1455 15 6 7.4833 -3.8943 0.3125 16 8 8.0007 -3.4271 1.3050 17 6 8.1384 -5.0440 -0.4087 18 7 9.4469 -5.3212 0.1987 19 6 10.4453 -4.3085 -0.2079 20 6 11.1283 -4.9766 -1.4234 21 6 10.9155 -6.4539 -1.1594 22 6 11.5182 -7.5746 -1.6914 23 6 11.1432 -8.8340 -1.2601 24 6 10.1629 -8.9680 -0.2937 25 6 9.5557 -7.8507 0.2398 26 6 9.9255 -6.5779 -0.1922 27 6 5.5766 -2.2668 0.4598 28 1 -0.4851 0.8400 0.0004 29 1 3.8645 -0.3620 -0.0014 30 1 3.4642 -3.6080 -1.7569 31 1 4.4648 -2.1692 -2.1416 32 1 5.3221 -4.9034 -1.2103 33 1 6.2038 -3.7280 -2.2227 34 1 7.5068 -5.9289 -0.3309 35 1 8.2730 -4.7848 -1.4589 36 1 9.9564 -3.3796 -0.5014 37 1 11.1650 -4.1323 0.5915 38 1 12.1916 -4.7381 -1.4479 39 1 10.6456 -4.6772 -2.3537 40 1 12.2837 -7.4686 -2.4457 41 1 11.6150 -9.7114 -1.6772 42 1 9.8720 -9.9515 0.0445 43 1 8.7911 -7.9621 0.9945 44 1 5.9600 -1.3138 0.0955 45 1 5.6412 -2.3121 1.5469 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019788805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:35 Heat of formation + Delta-G solvation = 37.251217 kcal Electronic energy + Delta-G solvation = -25678.779456 eV Core-core repulsion = 22083.079300 eV Total energy + Delta-G solvation = -3595.700156 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.23434 -39.70218 -37.61475 -36.68757 -34.30923 -32.75817 -31.70816 -30.47836 -29.84259 -29.21738 -28.43100 -26.57536 -23.57355 -23.30593 -22.70848 -21.55429 -21.33924 -20.24893 -19.09709 -17.77858 -17.36542 -16.79800 -16.58209 -16.08168 -15.69996 -15.55888 -14.84262 -14.75583 -14.18431 -14.04034 -13.82093 -13.67414 -13.36573 -13.22471 -13.02770 -12.75023 -12.64275 -12.49471 -12.29053 -12.00330 -11.91479 -11.80146 -11.51099 -11.47716 -11.18173 -10.94104 -10.75448 -10.51329 -10.13147 -10.10633 -9.67808 -9.48664 -9.12027 -9.02030 -8.53218 -8.18383 -7.39280 -5.85174 -3.23049 0.97398 1.07251 2.65835 2.82062 3.32888 3.36265 3.38856 3.41795 3.48779 4.22646 4.41757 4.47210 4.52018 4.64945 4.72233 4.78153 4.86367 4.86990 4.99096 5.11133 5.13149 5.15827 5.21301 5.28637 5.36364 5.40382 5.49468 5.52005 5.59568 5.61690 5.79004 5.81979 5.83347 6.04033 6.07952 6.10988 6.20169 6.22163 6.37681 6.42160 6.48415 6.57374 6.75214 6.96116 7.59743 7.88538 8.23470 8.33122 9.09680 9.82046 10.00091 11.32473 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.031062 B = 0.002458 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.212843 B =11390.938086 C =11745.987383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.277 1.277 6 H -0.290 1.290 7 C -0.249 4.249 8 H 0.092 0.908 9 N -0.739 5.739 10 C 0.177 3.823 11 H 0.072 0.928 12 C -0.153 4.153 13 C 0.099 3.901 14 N -0.615 5.615 15 C 0.525 3.475 16 O -0.523 6.523 17 C 0.046 3.954 18 N -0.474 5.474 19 C 0.059 3.941 20 C -0.114 4.114 21 C -0.138 4.138 22 C -0.090 4.090 23 C -0.133 4.133 24 C -0.104 4.104 25 C -0.110 4.110 26 C 0.092 3.908 27 C 0.098 3.902 28 H 0.261 0.739 29 H 0.363 0.637 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.065 0.935 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.437 -16.368 -5.962 29.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.188 4.188 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.203 1.203 6 H -0.216 1.216 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.381 5.381 10 C 0.065 3.935 11 H 0.090 0.910 12 C -0.194 4.194 13 C -0.024 4.024 14 N -0.351 5.351 15 C 0.312 3.688 16 O -0.399 6.399 17 C -0.083 4.083 18 N -0.191 5.191 19 C -0.068 4.068 20 C -0.152 4.152 21 C -0.141 4.141 22 C -0.109 4.109 23 C -0.151 4.151 24 C -0.123 4.123 25 C -0.130 4.130 26 C -0.004 4.004 27 C -0.025 4.025 28 H 0.071 0.929 29 H 0.197 0.803 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.124 0.876 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.083 0.917 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 23.397 -16.107 -4.807 28.809 hybrid contribution 0.579 1.171 -0.951 1.616 sum 23.976 -14.935 -5.758 28.828 Atomic orbital electron populations 1.69696 1.05115 1.26017 1.56846 1.24677 0.95243 0.97285 1.01597 0.86567 0.79182 0.84901 0.77952 1.20895 1.20286 1.21639 1.19015 0.80134 0.94852 1.43857 0.88999 1.42605 1.04160 1.01479 1.89856 1.21270 0.89043 0.89888 0.93274 0.90972 1.23372 0.94974 0.99506 1.01586 1.22135 0.94141 0.98878 0.87275 1.48450 1.22333 1.35149 1.29187 1.20013 0.79923 0.83922 0.84916 1.90717 1.62791 1.60929 1.25429 1.22041 0.90737 0.98709 0.96780 1.59641 1.02404 1.00182 1.56846 1.23141 0.93713 0.94133 0.95808 1.21759 1.02650 0.91028 0.99750 1.21036 1.00391 0.95380 0.97275 1.20401 0.99493 0.91238 0.99736 1.21066 0.98517 0.96929 0.98620 1.20948 0.96376 0.98162 0.96784 1.20569 1.01757 0.89847 1.00806 1.19553 0.96486 0.90406 0.93972 1.22520 0.92203 0.88750 0.99004 0.92902 0.80323 0.90176 0.90611 0.91678 0.92043 0.87609 0.91131 0.89688 0.88854 0.89406 0.90064 0.86206 0.85765 0.85508 0.85644 0.91658 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.45 13.97 55.49 0.78 -27.68 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 21.52 27.74 -169.99 -4.71 16.81 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.25 -6.72 10.47 -15.06 -0.16 -6.88 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 9 N -0.74 -16.60 5.08 -51.35 -0.26 -16.86 16 10 C 0.18 3.18 3.69 -65.78 -0.24 2.94 16 11 H 0.07 1.35 8.13 -51.93 -0.42 0.93 16 12 C -0.15 -2.30 6.65 -24.90 -0.17 -2.46 16 13 C 0.10 1.17 6.47 -3.06 -0.02 1.15 16 14 N -0.62 -8.73 3.33 -170.51 -0.57 -9.29 16 15 C 0.53 7.62 7.31 -10.98 -0.08 7.54 16 16 O -0.52 -9.52 16.23 5.56 0.09 -9.43 16 17 C 0.05 0.51 4.43 -4.98 -0.02 0.49 16 18 N -0.47 -5.64 4.60 -170.38 -0.78 -6.42 16 19 C 0.06 0.61 6.36 -2.43 -0.02 0.59 16 20 C -0.11 -0.93 6.92 -26.61 -0.18 -1.12 16 21 C -0.14 -1.31 6.23 -104.04 -0.65 -1.96 16 22 C -0.09 -0.73 10.03 -39.67 -0.40 -1.13 16 23 C -0.13 -0.98 10.06 -39.53 -0.40 -1.38 16 24 C -0.10 -0.82 10.02 -39.68 -0.40 -1.21 16 25 C -0.11 -1.05 10.05 -39.27 -0.39 -1.45 16 26 C 0.09 0.99 5.49 -83.41 -0.46 0.53 16 27 C 0.10 1.61 6.53 -2.53 -0.02 1.59 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.36 8.08 5.57 -40.82 -0.23 7.85 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.11 1.06 7.96 -51.93 -0.41 0.64 16 35 H 0.07 0.67 7.93 -51.93 -0.41 0.26 16 36 H 0.08 0.91 7.30 -51.93 -0.38 0.53 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 42 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 43 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 44 H 0.07 1.07 8.00 -51.93 -0.42 0.66 16 45 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 LS Contribution 366.38 15.07 5.52 5.52 Total: -1.00 -32.91 366.38 -10.56 -43.47 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -6.93 Total: 6.50 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -3.69 Total: -2.61 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.84 Total: -60.26 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.71 Total: 16.81 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.91 -10.56 -43.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019788805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.718 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds