Wall clock time and date at job start Tue Mar 31 2020 12:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99777 * 2 1 4 4 H 1.48500 * 109.47374 * 90.00307 * 3 2 1 5 5 H 1.48503 * 109.47019 * 210.00210 * 3 2 1 6 6 H 1.48501 * 109.47415 * 330.00368 * 3 2 1 7 7 C 1.38811 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99915 * 359.97438 * 7 2 1 9 9 N 1.36933 * 119.99672 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99902 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.88193 * 322.56685 * 10 9 7 12 12 C 1.55155 * 111.00702 * 86.44927 * 10 9 7 13 13 C 1.54328 * 102.94257 * 153.57691 * 12 10 9 14 14 N 1.47026 * 107.27042 * 337.80853 * 13 12 10 15 15 C 1.34776 * 125.64959 * 178.89546 * 14 13 12 16 16 O 1.21279 * 120.00087 * 180.02562 * 15 14 13 17 17 C 1.50702 * 119.99747 * 0.02562 * 15 14 13 18 18 N 1.46897 * 109.47035 * 174.20189 * 17 15 14 19 19 C 1.47910 * 111.00055 * 284.26195 * 18 17 15 20 20 C 1.54604 * 102.62135 * 265.48443 * 19 18 17 21 21 C 1.51576 * 102.83629 * 334.46848 * 20 19 18 22 22 C 1.37921 * 131.56239 * 196.35084 * 21 20 19 23 23 C 1.38302 * 120.08172 * 179.28451 * 22 21 20 24 24 C 1.38307 * 119.88167 * 359.97438 * 23 22 21 25 25 C 1.37906 * 120.26397 * 0.12949 * 24 23 22 26 26 C 1.38959 * 107.95252 * 15.93124 * 21 20 19 27 27 C 1.47427 * 108.70266 * 358.93927 * 14 13 12 28 28 H 0.97001 * 120.00325 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00017 * 359.97438 * 9 7 2 30 30 H 1.08997 * 110.72052 * 271.93828 * 12 10 9 31 31 H 1.09008 * 110.71953 * 35.21481 * 12 10 9 32 32 H 1.08997 * 109.88247 * 97.22291 * 13 12 10 33 33 H 1.09000 * 109.88460 * 218.23919 * 13 12 10 34 34 H 1.08996 * 109.47119 * 294.20838 * 17 15 14 35 35 H 1.09005 * 109.46774 * 54.20874 * 17 15 14 36 36 H 1.08991 * 110.78073 * 23.76714 * 19 18 17 37 37 H 1.09003 * 110.77868 * 147.20734 * 19 18 17 38 38 H 1.08999 * 110.74133 * 216.13175 * 20 19 18 39 39 H 1.08995 * 110.89332 * 92.87840 * 20 19 18 40 40 H 1.07998 * 119.95965 * 359.27674 * 22 21 20 41 41 H 1.07994 * 120.06208 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.86493 * 180.14581 * 24 23 22 43 43 H 1.08007 * 119.89950 * 180.02562 * 25 24 23 44 44 H 1.08999 * 110.36488 * 265.28978 * 27 14 13 45 45 H 1.09000 * 110.36598 * 142.96567 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5477 1.4402 -0.7001 6 1 1.4475 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0022 11 1 3.6063 -3.2121 0.6165 12 6 4.3120 -2.9964 -1.4483 13 6 5.5898 -3.8538 -1.3309 14 7 6.3225 -3.3852 -0.1455 15 6 7.4833 -3.8943 0.3125 16 8 8.0007 -3.4271 1.3050 17 6 8.1384 -5.0440 -0.4087 18 7 9.4469 -5.3212 0.1987 19 6 10.4453 -4.3085 -0.2079 20 6 11.1283 -4.9766 -1.4234 21 6 10.9155 -6.4539 -1.1594 22 6 11.5182 -7.5746 -1.6914 23 6 11.1432 -8.8340 -1.2601 24 6 10.1629 -8.9680 -0.2937 25 6 9.5557 -7.8507 0.2398 26 6 9.9255 -6.5779 -0.1922 27 6 5.5766 -2.2668 0.4598 28 1 -0.4851 0.8400 0.0004 29 1 3.8645 -0.3620 -0.0014 30 1 3.4642 -3.6080 -1.7569 31 1 4.4648 -2.1692 -2.1416 32 1 5.3221 -4.9034 -1.2103 33 1 6.2038 -3.7280 -2.2227 34 1 7.5068 -5.9289 -0.3309 35 1 8.2730 -4.7848 -1.4589 36 1 9.9564 -3.3796 -0.5014 37 1 11.1650 -4.1323 0.5915 38 1 12.1916 -4.7381 -1.4479 39 1 10.6456 -4.6772 -2.3537 40 1 12.2837 -7.4686 -2.4457 41 1 11.6150 -9.7114 -1.6772 42 1 9.8720 -9.9515 0.0445 43 1 8.7911 -7.9621 0.9945 44 1 5.9600 -1.3138 0.0955 45 1 5.6412 -2.3121 1.5469 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019788805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:34 Heat of formation + Delta-G solvation = 16.099818 kcal Electronic energy + Delta-G solvation = -25679.696649 eV Core-core repulsion = 22083.079300 eV Total energy + Delta-G solvation = -3596.617350 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.99793 -40.81115 -38.80470 -37.50144 -36.04157 -33.69713 -33.32833 -31.57904 -30.95621 -29.90897 -29.63896 -27.60525 -25.21470 -24.14221 -23.94138 -22.18336 -22.08792 -21.73024 -20.21162 -19.73001 -18.34308 -17.70833 -17.59728 -17.06734 -16.58249 -16.35685 -16.23809 -15.85753 -15.58511 -15.30975 -14.75726 -14.68413 -14.56944 -14.42264 -13.96594 -13.88106 -13.55181 -13.52409 -13.42038 -13.26759 -13.20521 -12.94446 -12.73001 -12.44976 -12.27296 -12.18188 -12.14438 -11.82328 -11.78937 -11.63823 -11.12738 -11.00004 -10.37346 -9.72744 -9.70842 -9.36051 -8.88339 -8.03319 -5.38484 0.34496 0.46045 1.38524 1.41669 1.48038 1.54599 1.76290 2.47599 2.64162 2.81810 3.25290 3.40523 3.49865 3.64002 3.75313 3.80743 3.95117 3.96319 4.11057 4.13278 4.19421 4.22785 4.28795 4.30936 4.42783 4.52686 4.53777 4.66411 4.68776 4.71871 4.80952 4.90175 4.95417 4.97934 5.13938 5.17574 5.23156 5.38053 5.40662 5.50822 5.61820 5.75420 5.79146 5.84464 6.19822 6.28030 6.48757 7.04292 7.10581 7.78663 7.97353 9.17495 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.031062 B = 0.002458 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.212843 B =11390.938086 C =11745.987383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.061 4.061 3 Si 0.951 3.049 4 H -0.282 1.282 5 H -0.250 1.250 6 H -0.296 1.296 7 C -0.229 4.229 8 H 0.063 0.937 9 N -0.744 5.744 10 C 0.167 3.833 11 H 0.060 0.940 12 C -0.145 4.145 13 C 0.106 3.894 14 N -0.614 5.614 15 C 0.525 3.475 16 O -0.567 6.567 17 C 0.057 3.943 18 N -0.497 5.497 19 C 0.056 3.944 20 C -0.104 4.104 21 C -0.148 4.148 22 C -0.095 4.095 23 C -0.131 4.131 24 C -0.106 4.106 25 C -0.125 4.125 26 C 0.068 3.932 27 C 0.108 3.892 28 H 0.258 0.742 29 H 0.367 0.633 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.141 0.859 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.122 0.878 44 H 0.067 0.933 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.223 -17.765 -7.898 32.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.252 4.252 3 Si 0.778 3.222 4 H -0.209 1.209 5 H -0.174 1.174 6 H -0.223 1.223 7 C -0.360 4.360 8 H 0.081 0.919 9 N -0.387 5.387 10 C 0.058 3.942 11 H 0.078 0.922 12 C -0.185 4.185 13 C -0.016 4.016 14 N -0.349 5.349 15 C 0.314 3.686 16 O -0.445 6.445 17 C -0.072 4.072 18 N -0.215 5.215 19 C -0.071 4.071 20 C -0.142 4.142 21 C -0.151 4.151 22 C -0.114 4.114 23 C -0.149 4.149 24 C -0.125 4.125 25 C -0.145 4.145 26 C -0.028 4.028 27 C -0.017 4.017 28 H 0.067 0.933 29 H 0.200 0.800 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.136 0.864 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.120 0.880 39 H 0.111 0.889 40 H 0.158 0.842 41 H 0.168 0.832 42 H 0.166 0.834 43 H 0.140 0.860 44 H 0.085 0.915 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 26.241 -17.559 -6.773 32.292 hybrid contribution -0.267 1.442 -0.301 1.497 sum 25.974 -16.117 -7.074 31.375 Atomic orbital electron populations 1.69868 1.07054 1.26695 1.59462 1.25458 0.96054 1.01119 1.02598 0.85474 0.78783 0.79945 0.77949 1.20887 1.17449 1.22268 1.18961 0.82064 0.93585 1.41347 0.91948 1.42558 1.02661 1.03327 1.90111 1.21416 0.89443 0.87910 0.95476 0.92194 1.23187 0.96868 0.99850 0.98597 1.22240 0.92670 0.99306 0.87428 1.48491 1.22328 1.34492 1.29627 1.20667 0.79433 0.84149 0.84385 1.90696 1.63924 1.62422 1.27492 1.21993 0.90643 0.97376 0.97171 1.59597 1.02865 1.01102 1.57909 1.23107 0.93522 0.93879 0.96570 1.21704 1.03343 0.90147 0.98978 1.21234 1.00281 0.96280 0.97264 1.20718 0.99653 0.91042 0.99939 1.21437 0.97877 0.97712 0.97901 1.21241 0.96116 0.98553 0.96564 1.20740 1.02331 0.90237 1.01231 1.19687 0.97681 0.90147 0.95279 1.22229 0.91280 0.89892 0.98252 0.93305 0.79973 0.90106 0.90977 0.89218 0.88859 0.86363 0.88850 0.90394 0.89929 0.88010 0.88917 0.84164 0.83201 0.83431 0.85979 0.91482 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.71 13.97 21.65 0.30 -61.41 16 2 C -0.06 -3.48 5.50 84.86 0.47 -3.02 16 3 Si 0.95 44.65 27.74 68.60 1.90 46.55 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 5 H -0.25 -10.49 6.52 99.48 0.65 -9.84 16 6 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 7 C -0.23 -12.53 10.47 84.03 0.88 -11.65 16 8 H 0.06 3.72 8.06 -2.92 -0.02 3.70 16 9 N -0.74 -33.13 5.08 -316.39 -1.61 -34.74 16 10 C 0.17 5.93 3.69 46.38 0.17 6.10 16 11 H 0.06 2.27 8.13 -2.39 -0.02 2.25 16 12 C -0.14 -4.05 6.65 31.78 0.21 -3.84 16 13 C 0.11 2.16 6.47 86.73 0.56 2.72 16 14 N -0.61 -16.31 3.33 -811.77 -2.70 -19.02 16 15 C 0.52 14.58 7.31 87.66 0.64 15.22 16 16 O -0.57 -20.70 16.23 -3.03 -0.05 -20.75 16 17 C 0.06 1.15 4.43 85.56 0.38 1.53 16 18 N -0.50 -11.34 4.60 -692.96 -3.18 -14.53 16 19 C 0.06 1.11 6.36 86.66 0.55 1.66 16 20 C -0.10 -1.48 6.92 30.67 0.21 -1.26 16 21 C -0.15 -2.47 6.23 -19.49 -0.12 -2.59 16 22 C -0.10 -1.25 10.03 22.21 0.22 -1.03 16 23 C -0.13 -1.53 10.06 22.30 0.22 -1.30 16 24 C -0.11 -1.41 10.02 22.21 0.22 -1.19 16 25 C -0.13 -2.24 10.05 22.47 0.23 -2.01 16 26 C 0.07 1.36 5.49 38.28 0.21 1.57 16 27 C 0.11 3.44 6.53 86.86 0.57 4.00 16 28 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 29 H 0.37 15.82 5.57 -92.71 -0.52 15.31 16 30 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.12 2.08 7.96 -2.39 -0.02 2.06 16 35 H 0.09 1.46 7.93 -2.38 -0.02 1.44 16 36 H 0.08 1.61 7.30 -2.39 -0.02 1.59 16 37 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 41 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 42 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 43 H 0.12 2.13 8.06 -2.91 -0.02 2.10 16 44 H 0.07 2.13 8.00 -2.39 -0.02 2.11 16 45 H 0.06 2.22 8.04 -2.39 -0.02 2.20 16 Total: -1.00 -73.45 366.38 0.70 -72.76 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.41 Total: 26.23 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 5.62 Total: 4.90 kcal Atomic # 7 Polarization: -122.50 SS G_CDS: -7.19 Total: -129.69 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.05 Total: -20.75 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.90 Total: 46.55 kcal Total: -73.45 0.70 -72.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019788805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.857 kcal (2) G-P(sol) polarization free energy of solvation -73.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds