Wall clock time and date at job start Tue Mar 31 2020 11:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99868 * 2 1 4 4 H 1.48504 * 109.47139 * 270.00248 * 3 2 1 5 5 H 1.48498 * 109.46915 * 30.00367 * 3 2 1 6 6 H 1.48501 * 109.47042 * 150.00315 * 3 2 1 7 7 C 1.38815 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99521 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00144 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64847 * 13.68772 * 9 7 2 11 11 C 1.55116 * 104.94456 * 156.03433 * 10 9 7 12 12 C 1.55167 * 101.48583 * 36.77545 * 11 10 9 13 13 C 1.47023 * 125.64592 * 193.73140 * 9 7 2 14 14 H 1.09002 * 109.88255 * 300.43687 * 13 9 7 15 15 C 1.52998 * 110.01462 * 61.53465 * 13 9 7 16 16 N 1.46491 * 109.47371 * 182.42062 * 15 13 9 17 17 C 1.34781 * 120.00423 * 185.08110 * 16 15 13 18 18 O 1.21280 * 119.99412 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00125 * 179.97438 * 17 16 15 20 20 H 1.08999 * 110.25761 * 60.60095 * 19 17 16 21 21 C 1.54340 * 110.29062 * 182.75474 * 19 17 16 22 22 C 1.54372 * 102.38556 * 145.27871 * 21 19 17 23 23 C 1.51222 * 105.12101 * 333.70878 * 22 21 19 24 24 C 1.38739 * 130.69409 * 197.16447 * 23 22 21 25 25 C 1.38579 * 118.56072 * 179.97438 * 24 23 22 26 26 C 1.38231 * 118.98560 * 359.97438 * 25 24 23 27 27 N 1.31686 * 120.80360 * 0.02562 * 26 25 24 28 28 C 1.32294 * 122.03098 * 359.97438 * 27 26 25 29 29 H 0.97004 * 120.00051 * 359.97438 * 1 2 3 30 30 H 1.09000 * 110.36560 * 274.74740 * 10 9 7 31 31 H 1.09000 * 110.36803 * 36.95993 * 10 9 7 32 32 H 1.09004 * 110.93760 * 278.78865 * 11 10 9 33 33 H 1.08993 * 111.16824 * 154.86604 * 11 10 9 34 34 H 1.09002 * 110.71781 * 206.26624 * 12 11 10 35 35 H 1.08999 * 110.71382 * 83.17255 * 12 11 10 36 36 H 1.08999 * 109.47016 * 302.42122 * 15 13 9 37 37 H 1.09003 * 109.46922 * 62.41698 * 15 13 9 38 38 H 0.97000 * 120.00205 * 5.07808 * 16 15 13 39 39 H 1.08992 * 110.82461 * 263.50063 * 21 19 17 40 40 H 1.09006 * 110.82154 * 27.05869 * 21 19 17 41 41 H 1.08997 * 110.31458 * 214.79673 * 22 21 19 42 42 H 1.08996 * 110.39488 * 92.65931 * 22 21 19 43 43 H 1.08001 * 120.71956 * 359.93402 * 24 23 22 44 44 H 1.07991 * 120.50684 * 179.97438 * 25 24 23 45 45 H 1.07996 * 119.59510 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1121 -2.5501 -0.2835 11 6 -0.2624 -4.0176 -0.7633 12 6 0.7665 -4.7455 0.1418 13 6 1.9025 -3.7104 0.2825 14 1 2.6949 -3.9301 -0.4330 15 6 2.4630 -3.7434 1.7058 16 7 3.0857 -5.0457 1.9553 17 6 3.5589 -5.3426 3.1819 18 8 3.4688 -4.5316 4.0792 19 6 4.1989 -6.6825 3.4387 20 1 5.0726 -6.8121 2.8000 21 6 4.5959 -6.8101 4.9247 22 6 4.3534 -8.3087 5.2048 23 6 3.2928 -8.7289 4.2122 24 6 2.4641 -9.8414 4.1905 25 6 1.5672 -9.9792 3.1431 26 6 1.5296 -9.0070 2.1612 27 7 2.3315 -7.9637 2.2141 28 6 3.2010 -7.7962 3.1969 29 1 -0.4850 0.8401 0.0004 30 1 -0.6974 -2.3881 0.6216 31 1 -0.4251 -1.8586 -1.0657 32 1 0.0065 -4.1129 -1.8153 33 1 -1.2714 -4.3887 -0.5844 34 1 1.1295 -5.6534 -0.3400 35 1 0.3306 -4.9744 1.1142 36 1 3.2082 -2.9564 1.8211 37 1 1.6538 -3.5850 2.4187 38 1 3.1574 -5.6945 1.2378 39 1 5.6455 -6.5539 5.0688 40 1 3.9549 -6.1901 5.5516 41 1 3.9947 -8.4499 6.2243 42 1 5.2688 -8.8781 5.0441 43 1 2.5173 -10.5843 4.9726 44 1 0.9078 -10.8330 3.0948 45 1 0.8342 -9.1042 1.3407 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028100174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:10 Heat of formation + Delta-G solvation = 18.897388 kcal Electronic energy + Delta-G solvation = -26428.495560 eV Core-core repulsion = 22831.999522 eV Total energy + Delta-G solvation = -3596.496038 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.16279 -39.17465 -37.58472 -36.12638 -34.13331 -32.91434 -32.39144 -29.81401 -29.52335 -29.05084 -27.84777 -24.81622 -23.86544 -23.71631 -22.32757 -21.42710 -20.25624 -19.83016 -19.30793 -17.45592 -16.92964 -16.64212 -16.39507 -15.75616 -15.34330 -14.90470 -14.68356 -14.46547 -14.03631 -13.78672 -13.73236 -13.51367 -13.20592 -13.17121 -12.68134 -12.17967 -11.99774 -11.90362 -11.80781 -11.77676 -11.57616 -11.24214 -11.21729 -10.90215 -10.74184 -10.14742 -10.07209 -10.03139 -9.86850 -9.75468 -9.67827 -9.60854 -9.43128 -8.90453 -8.57118 -8.46244 -6.78985 -5.71617 -3.07821 0.83923 1.04925 2.86644 3.41582 3.45789 3.48736 3.50660 3.65469 3.76080 4.12427 4.50689 4.54585 4.60881 4.68968 4.84807 4.93864 5.07383 5.21113 5.27818 5.35446 5.41398 5.51092 5.52002 5.57539 5.64235 5.71224 5.76037 5.88955 5.91059 5.97608 6.05301 6.16951 6.22525 6.37604 6.44537 6.54436 6.63992 6.73594 6.81941 6.93527 7.16677 7.57951 7.66032 7.77744 7.84192 7.95001 8.30898 8.60041 9.22559 9.83275 10.51114 11.40136 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.019358 B = 0.003431 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.067934 B = 8158.411180 C = 9320.640345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.003 4.003 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.076 0.924 9 N -0.590 5.590 10 C 0.173 3.827 11 C -0.149 4.149 12 C -0.120 4.120 13 C 0.153 3.847 14 H 0.036 0.964 15 C 0.110 3.890 16 N -0.708 5.708 17 C 0.518 3.482 18 O -0.544 6.544 19 C -0.062 4.062 20 H 0.118 0.882 21 C -0.103 4.103 22 C -0.079 4.079 23 C -0.144 4.144 24 C -0.066 4.066 25 C -0.173 4.173 26 C 0.107 3.893 27 N -0.468 5.468 28 C 0.126 3.874 29 H 0.253 0.747 30 H 0.023 0.977 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.402 0.598 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.132 0.868 44 H 0.137 0.863 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.905 -22.940 6.356 24.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.200 4.200 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.360 4.360 8 H 0.093 0.907 9 N -0.314 5.314 10 C 0.048 3.952 11 C -0.188 4.188 12 C -0.158 4.158 13 C 0.045 3.955 14 H 0.054 0.946 15 C -0.015 4.015 16 N -0.358 5.358 17 C 0.302 3.698 18 O -0.422 6.422 19 C -0.084 4.084 20 H 0.136 0.864 21 C -0.141 4.141 22 C -0.117 4.117 23 C -0.146 4.146 24 C -0.092 4.092 25 C -0.192 4.192 26 C -0.051 4.051 27 N -0.177 5.177 28 C -0.012 4.012 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.236 0.764 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.150 0.850 44 H 0.155 0.845 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.702 -21.438 6.294 23.059 hybrid contribution 0.372 -0.174 0.327 0.525 sum 6.074 -21.612 6.621 23.406 Atomic orbital electron populations 1.69943 1.05001 1.25194 1.56154 1.24899 0.95677 0.97815 1.01585 0.86145 0.78805 0.83465 0.77525 1.21575 1.21625 1.20541 1.18998 0.90405 0.82238 1.44330 0.90650 1.44491 1.05833 1.00846 1.80220 1.21490 0.84659 0.90279 0.98797 1.23044 0.97477 0.99624 0.98653 1.22540 0.96762 0.96894 0.99648 1.21102 0.94486 0.87891 0.92037 0.94643 1.22188 0.97312 0.82640 0.99357 1.46057 1.59439 1.18853 1.11467 1.20058 0.78924 0.87778 0.83073 1.90696 1.57708 1.49992 1.43838 1.20930 0.96780 0.90675 0.99999 0.86436 1.22286 1.03289 0.95419 0.93097 1.21021 0.96477 0.96227 0.97950 1.21434 0.98700 0.95920 0.98528 1.21055 0.93794 0.96358 0.97993 1.22101 1.00208 1.01151 0.95775 1.22675 0.95833 0.88720 0.97867 1.66805 1.04135 1.22124 1.24588 1.21416 0.94128 0.94901 0.90758 0.93671 0.95865 0.90816 0.92406 0.92465 0.92248 0.92020 0.91690 0.91867 0.76352 0.89404 0.88676 0.90050 0.89691 0.85013 0.84534 0.82317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.17 10.54 55.49 0.58 -26.58 16 2 C 0.00 -0.08 5.47 -17.43 -0.10 -0.17 16 3 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.23 -6.48 9.77 -15.06 -0.15 -6.63 16 8 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 9 N -0.59 -15.11 3.13 -162.44 -0.51 -15.62 16 10 C 0.17 4.25 5.43 -2.42 -0.01 4.24 16 11 C -0.15 -2.86 7.11 -24.46 -0.17 -3.04 16 12 C -0.12 -2.16 6.09 -24.89 -0.15 -2.31 16 13 C 0.15 3.19 3.22 -66.95 -0.22 2.97 16 14 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 15 C 0.11 2.27 5.08 -4.05 -0.02 2.25 16 16 N -0.71 -11.79 5.10 -60.30 -0.31 -12.10 16 17 C 0.52 8.58 7.17 -10.98 -0.08 8.50 16 18 O -0.54 -11.13 15.51 5.56 0.09 -11.04 16 19 C -0.06 -0.74 3.26 -91.84 -0.30 -1.04 16 20 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 21 C -0.10 -1.04 6.33 -25.31 -0.16 -1.20 16 22 C -0.08 -0.63 6.77 -26.91 -0.18 -0.81 16 23 C -0.14 -1.44 6.16 -104.20 -0.64 -2.08 16 24 C -0.07 -0.56 10.17 -39.27 -0.40 -0.95 16 25 C -0.17 -1.40 10.12 -39.46 -0.40 -1.80 16 26 C 0.11 1.06 11.18 -17.62 -0.20 0.86 16 27 N -0.47 -5.84 9.59 -9.19 -0.09 -5.93 16 28 C 0.13 1.52 6.57 -82.03 -0.54 0.98 16 29 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.02 0.62 8.08 -51.93 -0.42 0.21 16 31 H 0.07 2.00 6.86 -51.93 -0.36 1.65 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.14 7.81 -51.93 -0.41 0.73 16 36 H 0.06 1.48 7.93 -51.93 -0.41 1.07 16 37 H 0.06 1.46 8.08 -51.93 -0.42 1.04 16 38 H 0.40 5.91 7.73 -40.82 -0.32 5.59 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.18 7.06 -51.93 -0.37 0.82 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 45 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 363.61 15.07 5.48 5.48 Total: -1.00 -33.69 363.61 -10.38 -44.07 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.89 Total: 4.50 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -3.71 Total: -0.23 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: -0.32 Total: -60.23 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.69 -10.38 -44.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028100174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.970 kcal (2) G-P(sol) polarization free energy of solvation -33.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds