Wall clock time and date at job start Tue Mar 31 2020 11:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99868 * 2 1 4 4 H 1.48504 * 109.47139 * 270.00248 * 3 2 1 5 5 H 1.48498 * 109.46915 * 30.00367 * 3 2 1 6 6 H 1.48501 * 109.47042 * 150.00315 * 3 2 1 7 7 C 1.38815 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99521 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00144 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64847 * 13.68772 * 9 7 2 11 11 C 1.55116 * 104.94456 * 156.03433 * 10 9 7 12 12 C 1.55167 * 101.48583 * 36.77545 * 11 10 9 13 13 C 1.47023 * 125.64592 * 193.73140 * 9 7 2 14 14 H 1.09002 * 109.88255 * 300.43687 * 13 9 7 15 15 C 1.52998 * 110.01462 * 61.53465 * 13 9 7 16 16 N 1.46491 * 109.47371 * 182.42062 * 15 13 9 17 17 C 1.34781 * 120.00423 * 185.08110 * 16 15 13 18 18 O 1.21280 * 119.99412 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00125 * 179.97438 * 17 16 15 20 20 H 1.08999 * 110.25761 * 60.60095 * 19 17 16 21 21 C 1.54340 * 110.29062 * 182.75474 * 19 17 16 22 22 C 1.54372 * 102.38556 * 145.27871 * 21 19 17 23 23 C 1.51222 * 105.12101 * 333.70878 * 22 21 19 24 24 C 1.38739 * 130.69409 * 197.16447 * 23 22 21 25 25 C 1.38579 * 118.56072 * 179.97438 * 24 23 22 26 26 C 1.38231 * 118.98560 * 359.97438 * 25 24 23 27 27 N 1.31686 * 120.80360 * 0.02562 * 26 25 24 28 28 C 1.32294 * 122.03098 * 359.97438 * 27 26 25 29 29 H 0.97004 * 120.00051 * 359.97438 * 1 2 3 30 30 H 1.09000 * 110.36560 * 274.74740 * 10 9 7 31 31 H 1.09000 * 110.36803 * 36.95993 * 10 9 7 32 32 H 1.09004 * 110.93760 * 278.78865 * 11 10 9 33 33 H 1.08993 * 111.16824 * 154.86604 * 11 10 9 34 34 H 1.09002 * 110.71781 * 206.26624 * 12 11 10 35 35 H 1.08999 * 110.71382 * 83.17255 * 12 11 10 36 36 H 1.08999 * 109.47016 * 302.42122 * 15 13 9 37 37 H 1.09003 * 109.46922 * 62.41698 * 15 13 9 38 38 H 0.97000 * 120.00205 * 5.07808 * 16 15 13 39 39 H 1.08992 * 110.82461 * 263.50063 * 21 19 17 40 40 H 1.09006 * 110.82154 * 27.05869 * 21 19 17 41 41 H 1.08997 * 110.31458 * 214.79673 * 22 21 19 42 42 H 1.08996 * 110.39488 * 92.65931 * 22 21 19 43 43 H 1.08001 * 120.71956 * 359.93402 * 24 23 22 44 44 H 1.07991 * 120.50684 * 179.97438 * 25 24 23 45 45 H 1.07996 * 119.59510 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1121 -2.5501 -0.2835 11 6 -0.2624 -4.0176 -0.7633 12 6 0.7665 -4.7455 0.1418 13 6 1.9025 -3.7104 0.2825 14 1 2.6949 -3.9301 -0.4330 15 6 2.4630 -3.7434 1.7058 16 7 3.0857 -5.0457 1.9553 17 6 3.5589 -5.3426 3.1819 18 8 3.4688 -4.5316 4.0792 19 6 4.1989 -6.6825 3.4387 20 1 5.0726 -6.8121 2.8000 21 6 4.5959 -6.8101 4.9247 22 6 4.3534 -8.3087 5.2048 23 6 3.2928 -8.7289 4.2122 24 6 2.4641 -9.8414 4.1905 25 6 1.5672 -9.9792 3.1431 26 6 1.5296 -9.0070 2.1612 27 7 2.3315 -7.9637 2.2141 28 6 3.2010 -7.7962 3.1969 29 1 -0.4850 0.8401 0.0004 30 1 -0.6974 -2.3881 0.6216 31 1 -0.4251 -1.8586 -1.0657 32 1 0.0065 -4.1129 -1.8153 33 1 -1.2714 -4.3887 -0.5844 34 1 1.1295 -5.6534 -0.3400 35 1 0.3306 -4.9744 1.1142 36 1 3.2082 -2.9564 1.8211 37 1 1.6538 -3.5850 2.4187 38 1 3.1574 -5.6945 1.2378 39 1 5.6455 -6.5539 5.0688 40 1 3.9549 -6.1901 5.5516 41 1 3.9947 -8.4499 6.2243 42 1 5.2688 -8.8781 5.0441 43 1 2.5173 -10.5843 4.9726 44 1 0.9078 -10.8330 3.0948 45 1 0.8342 -9.1042 1.3407 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028100174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:06 Heat of formation + Delta-G solvation = -2.967652 kcal Electronic energy + Delta-G solvation = -26429.443699 eV Core-core repulsion = 22831.999522 eV Total energy + Delta-G solvation = -3597.444177 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 5.20 seconds Orbital eigenvalues (eV) -42.00050 -40.46330 -39.28090 -36.98293 -35.73050 -34.42355 -33.61844 -31.49937 -30.72064 -30.22396 -29.00195 -26.72284 -25.58375 -24.41652 -23.26206 -22.29608 -21.99605 -21.30112 -20.83484 -18.95117 -18.23369 -17.72970 -17.45584 -17.13558 -16.63640 -16.25718 -16.11233 -15.77411 -15.52268 -15.33702 -14.66873 -14.54975 -14.39031 -14.07579 -13.98021 -13.68312 -13.64046 -13.42226 -13.03168 -12.91025 -12.88410 -12.66219 -12.58673 -12.52067 -12.04521 -11.99994 -11.88341 -11.73537 -11.49481 -11.42499 -11.07943 -10.69430 -10.60626 -10.22303 -10.03628 -9.65106 -8.88684 -7.89136 -5.27208 0.13758 0.38977 1.43035 1.45600 1.54049 1.58141 2.18561 2.49295 2.85654 2.97189 3.29785 3.36074 3.64435 3.79955 3.90058 3.94467 3.97376 4.01240 4.13872 4.21789 4.24471 4.33079 4.44497 4.49126 4.52077 4.61312 4.67049 4.70316 4.85829 4.93270 4.97370 5.00618 5.08164 5.13371 5.19780 5.24196 5.27281 5.33145 5.39270 5.44967 5.56987 5.64403 5.75604 5.80957 6.21453 6.59483 7.04859 7.07457 7.26922 7.74298 8.40765 9.21593 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.019358 B = 0.003431 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.067934 B = 8158.411180 C = 9320.640345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.060 4.060 3 Si 0.975 3.025 4 H -0.280 1.280 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.611 5.611 10 C 0.175 3.825 11 C -0.132 4.132 12 C -0.104 4.104 13 C 0.150 3.850 14 H 0.049 0.951 15 C 0.131 3.869 16 N -0.697 5.697 17 C 0.513 3.487 18 O -0.590 6.590 19 C -0.053 4.053 20 H 0.141 0.859 21 C -0.103 4.103 22 C -0.070 4.070 23 C -0.149 4.149 24 C -0.070 4.070 25 C -0.163 4.163 26 C 0.087 3.913 27 N -0.497 5.497 28 C 0.093 3.907 29 H 0.248 0.752 30 H -0.012 1.012 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.034 0.966 37 H 0.028 0.972 38 H 0.415 0.585 39 H 0.107 0.893 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.111 0.889 43 H 0.162 0.838 44 H 0.168 0.832 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.985 -26.492 6.331 28.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.254 4.254 3 Si 0.803 3.197 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.198 1.198 7 C -0.370 4.370 8 H 0.094 0.906 9 N -0.335 5.335 10 C 0.050 3.950 11 C -0.171 4.171 12 C -0.142 4.142 13 C 0.043 3.957 14 H 0.067 0.933 15 C 0.005 3.995 16 N -0.348 5.348 17 C 0.300 3.700 18 O -0.471 6.471 19 C -0.075 4.075 20 H 0.158 0.842 21 C -0.141 4.141 22 C -0.107 4.107 23 C -0.151 4.151 24 C -0.095 4.095 25 C -0.183 4.183 26 C -0.070 4.070 27 N -0.206 5.206 28 C -0.045 4.045 29 H 0.057 0.943 30 H 0.006 0.994 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.252 0.748 39 H 0.125 0.875 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.129 0.871 43 H 0.180 0.820 44 H 0.186 0.814 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 6.811 -25.051 6.253 26.703 hybrid contribution 0.015 0.850 0.358 0.922 sum 6.826 -24.201 6.611 26.000 Atomic orbital electron populations 1.70150 1.06321 1.25407 1.57552 1.25704 0.96558 1.01056 1.02083 0.85144 0.77620 0.79296 0.77685 1.20671 1.22077 1.19807 1.19322 0.90772 0.83598 1.43356 0.90554 1.44763 1.06315 1.01921 1.80547 1.21305 0.83944 0.93495 0.96300 1.22913 0.99407 0.95328 0.99423 1.22466 0.95048 0.97159 0.99530 1.21281 0.95863 0.86685 0.91860 0.93345 1.21624 0.95445 0.83980 0.98467 1.45852 1.59123 1.17463 1.12358 1.20990 0.77914 0.89166 0.81973 1.90672 1.59381 1.51970 1.45084 1.20976 0.97346 0.87476 1.01713 0.84172 1.22306 1.03719 0.96898 0.91226 1.21031 0.97155 0.94355 0.98145 1.21711 0.99235 0.96021 0.98098 1.21471 0.92993 0.96357 0.98729 1.22481 0.99846 1.01273 0.94672 1.23113 0.95953 0.88746 0.99188 1.66719 1.04987 1.23552 1.25369 1.21434 0.95171 0.95699 0.92155 0.94284 0.99425 0.94097 0.90945 0.89932 0.88287 0.92609 0.94717 0.95306 0.74813 0.87491 0.91674 0.88741 0.87065 0.82016 0.81414 0.80602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.50 10.54 21.65 0.23 -58.27 16 2 C -0.06 -3.55 5.47 84.86 0.46 -3.09 16 3 Si 0.97 47.47 29.55 68.60 2.03 49.50 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.24 -13.94 9.77 84.04 0.82 -13.12 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.61 -32.21 3.13 -667.84 -2.09 -34.30 16 10 C 0.17 8.88 5.43 86.93 0.47 9.35 16 11 C -0.13 -4.89 7.11 32.06 0.23 -4.66 16 12 C -0.10 -3.57 6.09 31.79 0.19 -3.37 16 13 C 0.15 6.27 3.22 45.34 0.15 6.42 16 14 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 15 C 0.13 5.62 5.08 86.38 0.44 6.06 16 16 N -0.70 -23.39 5.10 -463.07 -2.36 -25.75 16 17 C 0.51 17.30 7.17 87.66 0.63 17.93 16 18 O -0.59 -25.25 15.51 -3.03 -0.05 -25.30 16 19 C -0.05 -1.23 3.26 -11.58 -0.04 -1.26 16 20 H 0.14 2.48 8.14 -2.39 -0.02 2.46 16 21 C -0.10 -1.97 6.33 31.51 0.20 -1.77 16 22 C -0.07 -0.90 6.77 30.48 0.21 -0.70 16 23 C -0.15 -2.57 6.16 -19.59 -0.12 -2.69 16 24 C -0.07 -0.92 10.17 22.47 0.23 -0.69 16 25 C -0.16 -2.08 10.12 22.35 0.23 -1.85 16 26 C 0.09 1.51 11.18 84.71 0.95 2.46 16 27 N -0.50 -11.54 9.59 -182.98 -1.76 -13.30 16 28 C 0.09 2.09 6.57 42.72 0.28 2.37 16 29 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 30 H -0.01 -0.70 8.08 -2.39 -0.02 -0.72 16 31 H 0.04 2.32 6.86 -2.39 -0.02 2.30 16 32 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.10 2.67 8.14 -2.39 -0.02 2.66 16 35 H 0.06 2.00 7.81 -2.39 -0.02 1.98 16 36 H 0.03 1.67 7.93 -2.39 -0.02 1.65 16 37 H 0.03 1.41 8.08 -2.39 -0.02 1.39 16 38 H 0.41 11.78 7.73 -92.71 -0.72 11.07 16 39 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.06 1.65 7.06 -2.38 -0.02 1.63 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 44 H 0.17 1.00 8.06 -2.92 -0.02 0.98 16 45 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -78.52 363.61 1.60 -76.92 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.28 Total: 19.12 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 5.32 Total: 11.38 kcal Atomic # 7 Polarization: -125.64 SS G_CDS: -5.98 Total: -131.62 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.05 Total: -25.30 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -78.52 1.60 -76.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028100174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.954 kcal (2) G-P(sol) polarization free energy of solvation -78.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.20 seconds