Wall clock time and date at job start Tue Mar 31 2020 11:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99952 * 2 1 4 4 H 1.48499 * 109.46983 * 185.02243 * 3 2 1 5 5 H 1.48501 * 109.47148 * 305.01860 * 3 2 1 6 6 H 1.48502 * 109.47381 * 65.02244 * 3 2 1 7 7 C 1.38814 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99916 * 183.42876 * 7 2 1 9 9 N 1.36937 * 119.99709 * 3.42610 * 7 2 1 10 10 C 1.47424 * 125.64926 * 15.24826 * 9 7 2 11 11 C 1.54912 * 104.83294 * 155.83483 * 10 9 7 12 12 C 1.55159 * 101.58248 * 37.00718 * 11 10 9 13 13 C 1.47018 * 125.64686 * 195.20018 * 9 7 2 14 14 H 1.08998 * 109.88993 * 300.67004 * 13 9 7 15 15 C 1.53007 * 109.88262 * 61.68210 * 13 9 7 16 16 N 1.46504 * 109.46886 * 301.76284 * 15 13 9 17 17 C 1.34770 * 119.99892 * 274.57323 * 16 15 13 18 18 O 1.21284 * 120.00212 * 5.26953 * 17 16 15 19 19 C 1.50704 * 120.00060 * 185.27308 * 17 16 15 20 20 H 1.08995 * 110.25772 * 326.39991 * 19 17 16 21 21 C 1.54337 * 110.37423 * 204.29377 * 19 17 16 22 22 C 1.54378 * 102.38419 * 214.67486 * 21 19 17 23 23 C 1.51223 * 105.11885 * 26.29413 * 22 21 19 24 24 C 1.38738 * 130.69256 * 162.86637 * 23 22 21 25 25 C 1.38573 * 118.55911 * 180.02562 * 24 23 22 26 26 C 1.38228 * 118.98749 * 0.25156 * 25 24 23 27 27 N 1.31687 * 120.80293 * 359.45957 * 26 25 24 28 28 C 1.32300 * 122.02754 * 0.56328 * 27 26 25 29 29 H 0.97007 * 119.99916 * 0.02562 * 1 2 3 30 30 H 1.09005 * 110.36299 * 274.67233 * 10 9 7 31 31 H 1.08997 * 110.36946 * 36.99433 * 10 9 7 32 32 H 1.08993 * 111.00388 * 155.08377 * 11 10 9 33 33 H 1.08997 * 111.00141 * 278.89590 * 11 10 9 34 34 H 1.09000 * 110.72101 * 206.13784 * 12 11 10 35 35 H 1.09001 * 110.71759 * 82.85896 * 12 11 10 36 36 H 1.09002 * 109.46965 * 181.76391 * 15 13 9 37 37 H 1.09000 * 109.46623 * 61.76010 * 15 13 9 38 38 H 0.96999 * 119.99613 * 94.56946 * 16 15 13 39 39 H 1.09003 * 110.82732 * 332.89619 * 21 19 17 40 40 H 1.09000 * 110.82610 * 96.25454 * 21 19 17 41 41 H 1.09000 * 110.30920 * 267.38100 * 22 21 19 42 42 H 1.09005 * 110.31072 * 145.20550 * 22 21 19 43 43 H 1.07998 * 120.72052 * 0.03739 * 24 23 22 44 44 H 1.08002 * 120.50813 * 179.97438 * 25 24 23 45 45 H 1.08000 * 119.59817 * 179.71696 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7055 1.3491 -0.1226 5 1 1.8019 2.4482 -1.1466 6 1 1.9857 2.3421 1.2691 7 6 2.0103 -1.2021 0.0005 8 1 3.0887 -1.2029 0.0565 9 7 1.3274 -2.3870 -0.0698 10 6 -0.0848 -2.5428 -0.4632 11 6 -0.1944 -3.9992 -0.9795 12 6 0.7595 -4.7459 -0.0100 13 6 1.8814 -3.7146 0.2336 14 1 2.7274 -3.9219 -0.4218 15 6 2.3303 -3.7695 1.6953 16 7 3.3273 -2.7242 1.9396 17 6 4.6278 -2.9584 1.6747 18 8 4.9614 -3.9975 1.1456 19 6 5.6676 -1.9291 2.0360 20 1 5.2578 -0.9249 1.9286 21 6 6.9188 -2.0945 1.1476 22 6 8.0628 -1.7185 2.1135 23 6 7.5302 -2.0270 3.4948 24 6 8.1913 -2.1906 4.7035 25 6 7.4429 -2.4734 5.8350 26 6 6.0702 -2.5873 5.7190 27 7 5.4756 -2.4202 4.5560 28 6 6.1546 -2.1495 3.4533 29 1 -0.4850 0.8401 -0.0004 30 1 -0.7369 -2.3954 0.3977 31 1 -0.3375 -1.8391 -1.2564 32 1 -1.2148 -4.3708 -0.8869 33 1 0.1553 -4.0761 -2.0090 34 1 1.1581 -5.6460 -0.4781 35 1 0.2495 -4.9883 0.9223 36 1 2.7683 -4.7455 1.9044 37 1 1.4701 -3.6103 2.3456 38 1 3.0514 -1.8636 2.2918 39 1 7.0205 -3.1258 0.8095 40 1 6.8843 -1.4118 0.2986 41 1 8.2978 -0.6577 2.0268 42 1 8.9470 -2.3210 1.9056 43 1 9.2659 -2.0993 4.7614 44 1 7.9252 -2.6072 6.7921 45 1 5.4778 -2.8120 6.5936 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028100176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:17 Heat of formation + Delta-G solvation = 20.935910 kcal Electronic energy + Delta-G solvation = -27012.056311 eV Core-core repulsion = 23415.648670 eV Total energy + Delta-G solvation = -3596.407641 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.95747 -39.02578 -37.41539 -35.89900 -33.71208 -32.75027 -32.53742 -29.62079 -29.29690 -29.01481 -27.82562 -24.87417 -23.80314 -23.55167 -22.07426 -21.28576 -20.13321 -19.72382 -19.05363 -17.35797 -16.84896 -16.55075 -16.37032 -15.34882 -15.18332 -15.02892 -14.58286 -14.40321 -13.90664 -13.65102 -13.55827 -13.42494 -13.04513 -12.77960 -12.23850 -12.08089 -11.91750 -11.85934 -11.81176 -11.68743 -11.50528 -11.08617 -10.98719 -10.85626 -10.77596 -10.38559 -10.06432 -9.94369 -9.86564 -9.71704 -9.60755 -9.44849 -9.22278 -8.71559 -8.56562 -8.16670 -6.72289 -5.74164 -3.07026 1.00529 1.20742 3.14477 3.34924 3.40093 3.43679 3.65217 3.93797 3.95764 4.39489 4.47285 4.68569 4.82593 4.84150 5.09199 5.10871 5.24032 5.38796 5.46845 5.49682 5.56307 5.58301 5.66274 5.71383 5.72634 5.79132 5.95295 5.97606 6.03607 6.13640 6.15583 6.26935 6.30676 6.39840 6.42381 6.60495 6.61686 6.70499 6.77230 7.14436 7.28433 7.56432 7.66607 7.81185 7.95984 8.25828 8.32774 8.89637 9.21962 9.84057 10.56127 11.38825 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013837 B = 0.004588 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.075084 B = 6100.888716 C = 7053.693426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.007 4.007 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.216 4.216 8 H 0.073 0.927 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.148 4.148 12 C -0.123 4.123 13 C 0.143 3.857 14 H 0.040 0.960 15 C 0.114 3.886 16 N -0.686 5.686 17 C 0.529 3.471 18 O -0.558 6.558 19 C -0.064 4.064 20 H 0.114 0.886 21 C -0.106 4.106 22 C -0.077 4.077 23 C -0.143 4.143 24 C -0.067 4.067 25 C -0.176 4.176 26 C 0.102 3.898 27 N -0.469 5.469 28 C 0.139 3.861 29 H 0.251 0.749 30 H 0.027 0.973 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.408 0.592 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.877 -4.531 8.375 16.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.204 4.204 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.345 4.345 8 H 0.091 0.909 9 N -0.318 5.318 10 C 0.049 3.951 11 C -0.187 4.187 12 C -0.161 4.161 13 C 0.034 3.966 14 H 0.058 0.942 15 C -0.013 4.013 16 N -0.333 5.333 17 C 0.313 3.687 18 O -0.437 6.437 19 C -0.086 4.086 20 H 0.132 0.868 21 C -0.144 4.144 22 C -0.115 4.115 23 C -0.145 4.145 24 C -0.093 4.093 25 C -0.196 4.196 26 C -0.055 4.055 27 N -0.177 5.177 28 C 0.001 3.999 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.243 0.757 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.150 0.850 44 H 0.153 0.847 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 12.113 -5.116 7.984 15.383 hybrid contribution 1.090 1.551 0.462 1.951 sum 13.203 -3.565 8.446 16.073 Atomic orbital electron populations 1.69946 1.04868 1.24848 1.56541 1.24878 0.95569 0.97497 1.02438 0.86246 0.78928 0.84477 0.77388 1.20445 1.21757 1.21752 1.18979 0.90165 0.82228 1.43142 0.90948 1.44500 1.08580 1.00678 1.78032 1.21362 0.85750 0.90174 0.97799 1.22991 0.97685 0.99605 0.98390 1.22493 0.97109 0.97232 0.99303 1.21383 0.94709 0.87049 0.93431 0.94216 1.21991 0.90321 0.90079 0.98864 1.45676 1.05689 1.18138 1.63785 1.19799 0.83387 0.87210 0.78267 1.90613 1.81209 1.27837 1.44070 1.20862 0.96869 1.00978 0.89926 0.86783 1.22330 0.90592 1.04654 0.96859 1.21001 0.98882 1.01994 0.89607 1.21461 0.95845 1.00895 0.96337 1.21027 1.00301 0.96754 0.91194 1.22060 0.95680 1.02586 0.99284 1.22648 0.92304 0.95810 0.94752 1.66864 1.41624 1.11064 0.98191 1.21364 0.90652 0.94768 0.93151 0.93852 0.95532 0.91887 0.92490 0.92513 0.92332 0.91977 0.92103 0.91191 0.75670 0.88559 0.89400 0.89690 0.90092 0.85050 0.84666 0.82600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.00 10.69 55.49 0.59 -25.41 16 2 C -0.01 -0.19 5.44 -17.43 -0.09 -0.28 16 3 Si 0.90 21.18 29.55 -169.99 -5.02 16.16 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.22 -5.65 8.35 -15.06 -0.13 -5.77 16 8 H 0.07 1.86 7.01 -52.49 -0.37 1.50 16 9 N -0.59 -14.58 3.13 -162.57 -0.51 -15.09 16 10 C 0.17 4.16 5.38 -2.53 -0.01 4.15 16 11 C -0.15 -2.84 7.09 -24.58 -0.17 -3.01 16 12 C -0.12 -2.23 6.48 -24.89 -0.16 -2.39 16 13 C 0.14 3.03 3.48 -66.95 -0.23 2.80 16 14 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 15 C 0.11 2.23 5.52 -4.04 -0.02 2.21 16 16 N -0.69 -13.45 3.46 -60.29 -0.21 -13.66 16 17 C 0.53 10.20 6.84 -10.99 -0.08 10.12 16 18 O -0.56 -12.14 15.36 5.55 0.09 -12.06 16 19 C -0.06 -1.03 3.26 -91.84 -0.30 -1.33 16 20 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 21 C -0.11 -1.43 6.51 -25.31 -0.16 -1.59 16 22 C -0.08 -0.83 6.77 -26.90 -0.18 -1.01 16 23 C -0.14 -1.81 6.16 -104.21 -0.64 -2.46 16 24 C -0.07 -0.70 10.17 -39.27 -0.40 -1.10 16 25 C -0.18 -1.76 10.12 -39.46 -0.40 -2.16 16 26 C 0.10 1.24 11.18 -17.62 -0.20 1.04 16 27 N -0.47 -7.33 10.34 -9.19 -0.09 -7.42 16 28 C 0.14 2.13 6.62 -82.04 -0.54 1.59 16 29 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.03 0.68 8.01 -51.93 -0.42 0.27 16 31 H 0.06 1.68 7.09 -51.93 -0.37 1.31 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.06 1.04 7.82 -51.93 -0.41 0.64 16 36 H 0.06 1.17 7.65 -51.93 -0.40 0.77 16 37 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 38 H 0.41 8.10 8.15 -40.82 -0.33 7.76 16 39 H 0.10 1.44 6.93 -51.93 -0.36 1.08 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 361.57 15.07 5.45 5.45 Total: -1.00 -32.06 361.57 -10.29 -42.35 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -6.85 Total: 8.86 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -3.73 Total: 0.82 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -0.22 Total: -61.57 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.06 -10.29 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028100176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.285 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds