Wall clock time and date at job start Tue Mar 31 2020 11:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99952 * 2 1 4 4 H 1.48499 * 109.46983 * 185.02243 * 3 2 1 5 5 H 1.48501 * 109.47148 * 305.01860 * 3 2 1 6 6 H 1.48502 * 109.47381 * 65.02244 * 3 2 1 7 7 C 1.38814 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99916 * 183.42876 * 7 2 1 9 9 N 1.36937 * 119.99709 * 3.42610 * 7 2 1 10 10 C 1.47424 * 125.64926 * 15.24826 * 9 7 2 11 11 C 1.54912 * 104.83294 * 155.83483 * 10 9 7 12 12 C 1.55159 * 101.58248 * 37.00718 * 11 10 9 13 13 C 1.47018 * 125.64686 * 195.20018 * 9 7 2 14 14 H 1.08998 * 109.88993 * 300.67004 * 13 9 7 15 15 C 1.53007 * 109.88262 * 61.68210 * 13 9 7 16 16 N 1.46504 * 109.46886 * 301.76284 * 15 13 9 17 17 C 1.34770 * 119.99892 * 274.57323 * 16 15 13 18 18 O 1.21284 * 120.00212 * 5.26953 * 17 16 15 19 19 C 1.50704 * 120.00060 * 185.27308 * 17 16 15 20 20 H 1.08995 * 110.25772 * 326.39991 * 19 17 16 21 21 C 1.54337 * 110.37423 * 204.29377 * 19 17 16 22 22 C 1.54378 * 102.38419 * 214.67486 * 21 19 17 23 23 C 1.51223 * 105.11885 * 26.29413 * 22 21 19 24 24 C 1.38738 * 130.69256 * 162.86637 * 23 22 21 25 25 C 1.38573 * 118.55911 * 180.02562 * 24 23 22 26 26 C 1.38228 * 118.98749 * 0.25156 * 25 24 23 27 27 N 1.31687 * 120.80293 * 359.45957 * 26 25 24 28 28 C 1.32300 * 122.02754 * 0.56328 * 27 26 25 29 29 H 0.97007 * 119.99916 * 0.02562 * 1 2 3 30 30 H 1.09005 * 110.36299 * 274.67233 * 10 9 7 31 31 H 1.08997 * 110.36946 * 36.99433 * 10 9 7 32 32 H 1.08993 * 111.00388 * 155.08377 * 11 10 9 33 33 H 1.08997 * 111.00141 * 278.89590 * 11 10 9 34 34 H 1.09000 * 110.72101 * 206.13784 * 12 11 10 35 35 H 1.09001 * 110.71759 * 82.85896 * 12 11 10 36 36 H 1.09002 * 109.46965 * 181.76391 * 15 13 9 37 37 H 1.09000 * 109.46623 * 61.76010 * 15 13 9 38 38 H 0.96999 * 119.99613 * 94.56946 * 16 15 13 39 39 H 1.09003 * 110.82732 * 332.89619 * 21 19 17 40 40 H 1.09000 * 110.82610 * 96.25454 * 21 19 17 41 41 H 1.09000 * 110.30920 * 267.38100 * 22 21 19 42 42 H 1.09005 * 110.31072 * 145.20550 * 22 21 19 43 43 H 1.07998 * 120.72052 * 0.03739 * 24 23 22 44 44 H 1.08002 * 120.50813 * 179.97438 * 25 24 23 45 45 H 1.08000 * 119.59817 * 179.71696 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7055 1.3491 -0.1226 5 1 1.8019 2.4482 -1.1466 6 1 1.9857 2.3421 1.2691 7 6 2.0103 -1.2021 0.0005 8 1 3.0887 -1.2029 0.0565 9 7 1.3274 -2.3870 -0.0698 10 6 -0.0848 -2.5428 -0.4632 11 6 -0.1944 -3.9992 -0.9795 12 6 0.7595 -4.7459 -0.0100 13 6 1.8814 -3.7146 0.2336 14 1 2.7274 -3.9219 -0.4218 15 6 2.3303 -3.7695 1.6953 16 7 3.3273 -2.7242 1.9396 17 6 4.6278 -2.9584 1.6747 18 8 4.9614 -3.9975 1.1456 19 6 5.6676 -1.9291 2.0360 20 1 5.2578 -0.9249 1.9286 21 6 6.9188 -2.0945 1.1476 22 6 8.0628 -1.7185 2.1135 23 6 7.5302 -2.0270 3.4948 24 6 8.1913 -2.1906 4.7035 25 6 7.4429 -2.4734 5.8350 26 6 6.0702 -2.5873 5.7190 27 7 5.4756 -2.4202 4.5560 28 6 6.1546 -2.1495 3.4533 29 1 -0.4850 0.8401 -0.0004 30 1 -0.7369 -2.3954 0.3977 31 1 -0.3375 -1.8391 -1.2564 32 1 -1.2148 -4.3708 -0.8869 33 1 0.1553 -4.0761 -2.0090 34 1 1.1581 -5.6460 -0.4781 35 1 0.2495 -4.9883 0.9223 36 1 2.7683 -4.7455 1.9044 37 1 1.4701 -3.6103 2.3456 38 1 3.0514 -1.8636 2.2918 39 1 7.0205 -3.1258 0.8095 40 1 6.8843 -1.4118 0.2986 41 1 8.2978 -0.6577 2.0268 42 1 8.9470 -2.3210 1.9056 43 1 9.2659 -2.0993 4.7614 44 1 7.9252 -2.6072 6.7921 45 1 5.4778 -2.8120 6.5936 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028100176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:16 Heat of formation + Delta-G solvation = 1.482802 kcal Electronic energy + Delta-G solvation = -27012.899861 eV Core-core repulsion = 23415.648670 eV Total energy + Delta-G solvation = -3597.251191 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.99397 -40.47680 -39.08811 -36.97295 -35.34033 -34.52009 -33.65345 -31.18995 -30.85053 -30.24909 -29.07287 -26.69717 -25.50380 -24.46873 -23.19472 -22.40160 -21.78771 -21.22094 -20.72632 -18.76771 -18.65671 -17.66491 -17.35344 -16.91586 -16.66716 -16.36441 -16.04190 -15.81855 -15.61997 -15.06396 -14.61370 -14.47339 -14.13123 -13.95198 -13.88397 -13.68853 -13.66665 -13.50095 -12.97451 -12.91041 -12.73545 -12.62539 -12.59284 -12.55963 -12.05776 -11.98331 -11.94959 -11.67337 -11.51316 -11.40841 -10.95815 -10.64714 -10.61038 -10.23689 -9.81709 -9.68737 -8.74227 -7.81532 -5.15981 0.09831 0.35397 1.44255 1.46257 1.54805 1.69102 2.39892 2.51383 2.83282 2.95509 3.37968 3.41943 3.70967 3.74328 3.89448 3.94047 4.06007 4.08941 4.12465 4.22057 4.30163 4.30758 4.44816 4.48043 4.56684 4.63832 4.67203 4.72929 4.82937 4.87544 4.95670 4.99204 5.02984 5.09897 5.18641 5.21195 5.23086 5.29804 5.49017 5.54609 5.68184 5.69029 5.77632 5.80300 6.28156 6.70780 7.03106 7.15548 7.34526 7.83931 8.53779 9.30752 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013837 B = 0.004588 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.075084 B = 6100.888716 C = 7053.693426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.060 4.060 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.299 1.299 6 H -0.291 1.291 7 C -0.212 4.212 8 H 0.073 0.927 9 N -0.608 5.608 10 C 0.178 3.822 11 C -0.134 4.134 12 C -0.113 4.113 13 C 0.140 3.860 14 H 0.015 0.985 15 C 0.120 3.880 16 N -0.690 5.690 17 C 0.526 3.474 18 O -0.588 6.588 19 C -0.065 4.065 20 H 0.109 0.891 21 C -0.106 4.106 22 C -0.067 4.067 23 C -0.148 4.148 24 C -0.067 4.067 25 C -0.161 4.161 26 C 0.083 3.917 27 N -0.509 5.509 28 C 0.100 3.900 29 H 0.244 0.756 30 H 0.003 0.997 31 H 0.027 0.973 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.405 0.595 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.169 0.831 44 H 0.175 0.825 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.398 -5.052 9.739 18.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.253 4.253 3 Si 0.786 3.214 4 H -0.186 1.186 5 H -0.226 1.226 6 H -0.219 1.219 7 C -0.342 4.342 8 H 0.090 0.910 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.172 4.172 12 C -0.151 4.151 13 C 0.033 3.967 14 H 0.033 0.967 15 C -0.007 4.007 16 N -0.336 5.336 17 C 0.312 3.688 18 O -0.470 6.470 19 C -0.087 4.087 20 H 0.127 0.873 21 C -0.144 4.144 22 C -0.104 4.104 23 C -0.150 4.150 24 C -0.092 4.092 25 C -0.180 4.180 26 C -0.075 4.075 27 N -0.218 5.218 28 C -0.037 4.037 29 H 0.054 0.946 30 H 0.021 0.979 31 H 0.045 0.955 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.239 0.761 39 H 0.095 0.905 40 H 0.115 0.885 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.186 0.814 44 H 0.192 0.808 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 14.659 -5.658 9.350 18.284 hybrid contribution 0.328 1.648 0.106 1.684 sum 14.987 -4.010 9.455 18.168 Atomic orbital electron populations 1.70136 1.06186 1.24903 1.58252 1.25551 0.96288 1.00375 1.03088 0.85317 0.78792 0.80621 0.76638 1.18581 1.22650 1.21867 1.19181 0.90293 0.83081 1.41620 0.90973 1.44753 1.08903 1.01493 1.78175 1.21176 0.85083 0.92608 0.95817 1.22868 0.99777 0.96125 0.98464 1.22500 0.95622 0.96917 1.00106 1.21463 0.95030 0.86468 0.93773 0.96675 1.21863 0.90582 0.90504 0.97717 1.45746 1.06151 1.17903 1.63834 1.20435 0.83648 0.87561 0.77121 1.90578 1.81655 1.29349 1.45390 1.20908 0.96680 0.99297 0.91848 0.87297 1.22339 0.90794 1.03746 0.97526 1.21007 0.98161 1.03605 0.87676 1.21739 0.94772 1.00467 0.97990 1.21504 1.02160 0.95351 0.90201 1.22501 0.94705 0.99927 1.00898 1.23143 0.94006 0.96006 0.94313 1.66761 1.43311 1.12414 0.99356 1.21307 0.92085 0.97706 0.92593 0.94633 0.97885 0.95474 0.89585 0.92303 0.89789 0.90181 0.91539 0.90899 0.76062 0.90523 0.88514 0.87633 0.87833 0.81362 0.80770 0.80689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.67 10.69 21.65 0.23 -55.43 16 2 C -0.06 -3.28 5.44 84.86 0.46 -2.82 16 3 Si 0.96 44.44 29.55 68.60 2.03 46.46 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 7 C -0.21 -11.36 8.35 84.03 0.70 -10.66 16 8 H 0.07 3.80 7.01 -2.91 -0.02 3.78 16 9 N -0.61 -30.62 3.13 -668.25 -2.09 -32.71 16 10 C 0.18 8.72 5.38 86.86 0.47 9.19 16 11 C -0.13 -4.98 7.09 31.99 0.23 -4.75 16 12 C -0.11 -3.92 6.48 31.79 0.21 -3.71 16 13 C 0.14 6.01 3.48 45.35 0.16 6.16 16 14 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 15 C 0.12 4.76 5.52 86.38 0.48 5.23 16 16 N -0.69 -27.90 3.46 -463.04 -1.60 -29.50 16 17 C 0.53 20.87 6.84 87.66 0.60 21.47 16 18 O -0.59 -26.34 15.36 -3.04 -0.05 -26.39 16 19 C -0.07 -2.12 3.26 -11.58 -0.04 -2.16 16 20 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 21 C -0.11 -2.80 6.51 31.52 0.21 -2.59 16 22 C -0.07 -1.28 6.77 30.48 0.21 -1.08 16 23 C -0.15 -3.42 6.16 -19.60 -0.12 -3.54 16 24 C -0.07 -1.14 10.17 22.47 0.23 -0.92 16 25 C -0.16 -2.65 10.12 22.35 0.23 -2.42 16 26 C 0.08 1.87 11.18 84.71 0.95 2.82 16 27 N -0.51 -15.84 10.34 -182.98 -1.89 -17.73 16 28 C 0.10 3.04 6.62 42.72 0.28 3.33 16 29 H 0.24 14.12 8.31 -92.70 -0.77 13.35 16 30 H 0.00 0.17 8.01 -2.38 -0.02 0.15 16 31 H 0.03 1.50 7.09 -2.39 -0.02 1.48 16 32 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.08 2.51 7.82 -2.39 -0.02 2.49 16 36 H 0.07 2.56 7.65 -2.39 -0.02 2.54 16 37 H 0.07 2.82 8.10 -2.39 -0.02 2.81 16 38 H 0.40 16.73 8.15 -92.71 -0.76 15.97 16 39 H 0.08 2.32 6.93 -2.39 -0.02 2.30 16 40 H 0.10 2.29 8.14 -2.39 -0.02 2.28 16 41 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 43 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 44 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 45 H 0.18 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -72.97 361.57 2.11 -70.87 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: 0.24 Total: 30.86 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 5.24 Total: 13.56 kcal Atomic # 7 Polarization: -130.02 SS G_CDS: -5.35 Total: -135.37 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.05 Total: -26.39 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -72.97 2.11 -70.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028100176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.351 kcal (2) G-P(sol) polarization free energy of solvation -72.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds