Wall clock time and date at job start Tue Mar 31 2020 11:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99817 * 2 1 4 4 H 1.48499 * 109.47108 * 264.58004 * 3 2 1 5 5 H 1.48501 * 109.46970 * 24.58411 * 3 2 1 6 6 H 1.48498 * 109.46602 * 144.58155 * 3 2 1 7 7 C 1.38808 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99970 * 339.53981 * 7 2 1 9 9 N 1.36941 * 119.99909 * 159.53835 * 7 2 1 10 10 C 1.47428 * 125.64635 * 328.86523 * 9 7 2 11 11 C 1.54910 * 104.83000 * 204.08836 * 10 9 7 12 12 C 1.55153 * 101.58266 * 322.99499 * 11 10 9 13 13 C 1.47316 * 125.61486 * 148.64291 * 9 7 2 14 14 H 1.08997 * 109.85201 * 59.57930 * 13 9 7 15 15 C 1.53003 * 110.06302 * 298.32106 * 13 9 7 16 16 N 1.46502 * 109.47214 * 61.31749 * 15 13 9 17 17 C 1.34775 * 119.99799 * 185.80510 * 16 15 13 18 18 O 1.21280 * 120.00125 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99727 * 180.02562 * 17 16 15 20 20 H 1.09003 * 110.73156 * 300.69728 * 19 17 16 21 21 C 1.54364 * 110.82330 * 177.29286 * 19 17 16 22 22 C 1.51218 * 105.12154 * 268.06756 * 21 19 17 23 23 C 1.38735 * 130.69585 * 162.86647 * 22 21 19 24 24 C 1.38582 * 118.56285 * 180.02562 * 23 22 21 25 25 C 1.38230 * 118.98396 * 0.02562 * 24 23 22 26 26 N 1.31687 * 120.80278 * 359.97438 * 25 24 23 27 27 C 1.32301 * 122.03302 * 359.97438 * 26 25 24 28 28 C 1.52007 * 130.09402 * 180.02562 * 27 26 25 29 29 H 0.97008 * 119.99991 * 359.97438 * 1 2 3 30 30 H 1.09002 * 110.36287 * 85.25295 * 10 9 7 31 31 H 1.08991 * 110.45975 * 322.97941 * 10 9 7 32 32 H 1.08997 * 111.00050 * 204.91720 * 11 10 9 33 33 H 1.08999 * 111.03348 * 81.08238 * 11 10 9 34 34 H 1.08998 * 110.71948 * 153.86444 * 12 11 10 35 35 H 1.08998 * 110.72166 * 276.95542 * 12 11 10 36 36 H 1.09000 * 109.47058 * 181.32040 * 15 13 9 37 37 H 1.09006 * 109.47054 * 301.31904 * 15 13 9 38 38 H 0.97003 * 119.99781 * 5.80564 * 16 15 13 39 39 H 1.08997 * 110.31224 * 26.98225 * 21 19 17 40 40 H 1.09004 * 110.31426 * 149.15247 * 21 19 17 41 41 H 1.08001 * 120.72073 * 0.02807 * 23 22 21 42 42 H 1.07994 * 120.50945 * 180.02562 * 24 23 22 43 43 H 1.07998 * 119.59821 * 179.97438 * 25 24 23 44 44 H 1.09001 * 110.35827 * 78.35902 * 28 27 26 45 45 H 1.08992 * 110.47546 * 316.06372 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6122 1.9804 -1.3938 5 1 1.3950 2.6830 0.5825 6 1 3.4857 1.4759 0.8114 7 6 2.0102 -1.2021 -0.0005 8 1 1.5213 -2.1081 0.3260 9 7 3.3148 -1.2393 -0.4151 10 6 3.9178 -0.3613 -1.4345 11 6 5.1319 -1.1571 -1.9752 12 6 5.6473 -1.8523 -0.6874 13 6 4.3487 -2.1606 0.0874 14 1 4.0452 -3.1917 -0.0934 15 6 4.5700 -1.9351 1.5844 16 7 3.3260 -2.2083 2.3085 17 6 3.2486 -1.9629 3.6315 18 8 4.2086 -1.5155 4.2224 19 6 1.9692 -2.2445 4.3764 20 1 1.1444 -1.6674 3.9584 21 6 2.1356 -1.9519 5.8829 22 6 2.5623 -3.2670 6.4954 23 6 3.1503 -3.5457 7.7207 24 6 3.4409 -4.8646 8.0314 25 6 3.1366 -5.8518 7.1131 26 7 2.5784 -5.5504 5.9590 27 6 2.2847 -4.3042 5.6258 28 6 1.6470 -3.7535 4.3606 29 1 -0.4850 0.8401 0.0004 30 1 4.2481 0.5738 -0.9822 31 1 3.2063 -0.1636 -2.2361 32 1 5.8867 -0.4867 -2.3861 33 1 4.8192 -1.8917 -2.7172 34 1 6.1782 -2.7723 -0.9319 35 1 6.2870 -1.1799 -0.1158 36 1 5.3526 -2.6048 1.9410 37 1 4.8705 -0.9014 1.7556 38 1 2.5582 -2.5659 1.8357 39 1 2.9042 -1.1948 6.0387 40 1 1.1885 -1.6243 6.3116 41 1 3.3765 -2.7520 8.4174 42 1 3.8983 -5.1172 8.9766 43 1 3.3592 -6.8829 7.3448 44 1 0.5686 -3.9106 4.3802 45 1 2.0824 -4.2231 3.4787 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028287150.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:58 Heat of formation + Delta-G solvation = 19.609941 kcal Electronic energy + Delta-G solvation = -26785.820681 eV Core-core repulsion = 23189.355541 eV Total energy + Delta-G solvation = -3596.465140 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.87295 -39.16319 -37.92291 -35.70583 -33.93517 -32.71528 -32.61333 -30.06369 -30.02536 -28.90529 -27.71682 -25.27341 -24.25486 -23.23942 -21.85092 -21.65753 -20.86911 -19.75073 -19.07749 -17.34274 -16.67856 -16.64746 -16.06914 -15.72309 -15.50803 -15.16587 -14.79689 -14.59501 -14.23372 -13.49861 -13.39638 -13.35528 -13.03527 -12.91632 -12.76940 -12.60027 -12.48933 -11.95635 -11.80620 -11.72025 -11.47155 -11.25591 -11.17929 -11.16039 -10.90693 -10.68716 -10.53804 -10.17222 -10.05570 -9.72584 -9.60098 -9.35911 -9.22830 -8.71177 -8.67708 -8.30928 -7.02521 -6.09702 -3.47754 1.10240 1.29340 3.15070 3.30028 3.43287 3.49865 3.73526 3.79485 3.96670 4.46557 4.48188 4.69605 4.87754 4.89947 4.92394 5.09417 5.15609 5.18324 5.25571 5.27860 5.38722 5.53260 5.55212 5.63283 5.71669 5.81984 5.83760 5.90359 5.91922 6.02268 6.05775 6.09604 6.12750 6.15439 6.24398 6.30475 6.31143 6.38548 6.64475 6.69841 6.75374 6.83426 7.13373 7.71177 8.00152 8.15400 8.23036 8.68217 8.83580 9.55888 10.12386 11.05224 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.003955 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.573362 B = 7077.599572 C = 7768.604433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.038 3.962 3 Si 0.880 3.120 4 H -0.285 1.285 5 H -0.302 1.302 6 H -0.274 1.274 7 C -0.246 4.246 8 H 0.085 0.915 9 N -0.601 5.601 10 C 0.117 3.883 11 C -0.131 4.131 12 C -0.124 4.124 13 C 0.142 3.858 14 H 0.050 0.950 15 C 0.116 3.884 16 N -0.697 5.697 17 C 0.519 3.481 18 O -0.560 6.560 19 C -0.112 4.112 20 H 0.124 0.876 21 C -0.067 4.067 22 C -0.132 4.132 23 C -0.065 4.065 24 C -0.177 4.177 25 C 0.095 3.905 26 N -0.480 5.480 27 C 0.119 3.881 28 C -0.059 4.059 29 H 0.265 0.735 30 H 0.020 0.980 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.411 0.589 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.154 0.846 44 H 0.102 0.898 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.021 -7.424 9.627 13.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.163 4.163 3 Si 0.710 3.290 4 H -0.211 1.211 5 H -0.230 1.230 6 H -0.200 1.200 7 C -0.373 4.373 8 H 0.102 0.898 9 N -0.327 5.327 10 C -0.008 4.008 11 C -0.170 4.170 12 C -0.162 4.162 13 C 0.035 3.965 14 H 0.068 0.932 15 C -0.010 4.010 16 N -0.348 5.348 17 C 0.304 3.696 18 O -0.440 6.440 19 C -0.133 4.133 20 H 0.142 0.858 21 C -0.105 4.105 22 C -0.134 4.134 23 C -0.091 4.091 24 C -0.197 4.197 25 C -0.062 4.062 26 N -0.188 5.188 27 C -0.019 4.019 28 C -0.097 4.097 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.250 0.750 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.172 0.828 44 H 0.120 0.880 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.246 -7.701 9.450 13.698 hybrid contribution 0.321 1.624 0.520 1.735 sum 6.567 -6.076 9.970 13.396 Atomic orbital electron populations 1.69819 1.05656 1.26887 1.51825 1.25256 0.95068 0.97542 0.98399 0.86907 0.79643 0.84485 0.77962 1.21140 1.22993 1.19992 1.18340 0.83401 0.94035 1.41563 0.89801 1.44904 1.06411 1.39939 1.41395 1.21880 0.93744 0.93119 0.92013 1.22716 0.97965 0.99423 0.96865 1.22512 0.96633 1.00362 0.96737 1.21430 0.89418 0.95322 0.90324 0.93236 1.21877 0.85637 1.00468 0.93011 1.45977 1.16722 1.64406 1.07712 1.20167 0.88993 0.77761 0.82637 1.90613 1.38697 1.46368 1.68317 1.22025 0.98152 0.97084 0.96086 0.85832 1.20899 1.02514 0.94745 0.92301 1.21461 0.98966 0.97903 0.95091 1.21045 0.95727 0.96816 0.95522 1.22022 1.02724 0.93639 1.01338 1.22572 0.95187 0.99675 0.88791 1.66830 1.11755 1.21476 1.18751 1.21996 0.95139 0.88291 0.96430 1.21050 1.01449 0.92684 0.94500 0.92557 0.96244 0.92560 0.91802 0.91251 0.91401 0.91506 0.93178 0.92062 0.74971 0.88451 0.89228 0.85114 0.84814 0.82828 0.88028 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.58 13.97 55.49 0.78 -24.80 16 2 C 0.04 1.03 5.44 -17.43 -0.09 0.94 16 3 Si 0.88 22.00 24.60 -169.99 -4.18 17.82 16 4 H -0.28 -6.93 6.96 56.52 0.39 -6.54 16 5 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 6 H -0.27 -7.03 7.03 56.52 0.40 -6.63 16 7 C -0.25 -6.16 8.56 -15.06 -0.13 -6.29 16 8 H 0.08 2.16 6.95 -52.48 -0.36 1.80 16 9 N -0.60 -13.18 2.76 -162.35 -0.45 -13.63 16 10 C 0.12 2.41 4.87 -2.53 -0.01 2.40 16 11 C -0.13 -2.07 7.09 -24.58 -0.17 -2.24 16 12 C -0.12 -1.87 6.47 -24.90 -0.16 -2.04 16 13 C 0.14 2.58 3.36 -66.79 -0.22 2.35 16 14 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 15 C 0.12 2.17 5.19 -4.04 -0.02 2.15 16 16 N -0.70 -13.10 4.60 -60.29 -0.28 -13.37 16 17 C 0.52 9.75 7.12 -10.99 -0.08 9.67 16 18 O -0.56 -12.09 15.50 5.56 0.09 -12.01 16 19 C -0.11 -1.69 3.45 -90.37 -0.31 -2.00 16 20 H 0.12 1.80 8.14 -51.93 -0.42 1.38 16 21 C -0.07 -0.92 6.10 -26.91 -0.16 -1.08 16 22 C -0.13 -1.86 6.16 -104.21 -0.64 -2.50 16 23 C -0.07 -0.79 10.17 -39.27 -0.40 -1.19 16 24 C -0.18 -1.91 10.12 -39.46 -0.40 -2.31 16 25 C 0.10 1.14 11.18 -17.62 -0.20 0.95 16 26 N -0.48 -7.17 10.35 -9.02 -0.09 -7.26 16 27 C 0.12 1.78 7.33 -81.77 -0.60 1.18 16 28 C -0.06 -0.81 6.33 -26.55 -0.17 -0.98 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.02 0.43 5.50 -51.93 -0.29 0.15 16 31 H 0.06 1.22 7.92 -51.93 -0.41 0.81 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 38 H 0.41 7.69 6.01 -40.82 -0.25 7.44 16 39 H 0.10 1.47 6.99 -51.93 -0.36 1.11 16 40 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.09 1.29 7.66 -51.93 -0.40 0.89 16 LS Contribution 356.43 15.07 5.37 5.37 Total: -1.00 -32.05 356.43 -9.24 -41.29 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.70 Total: 7.60 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -3.78 Total: -1.01 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -0.04 Total: -59.07 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.18 Total: 17.82 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.05 -9.24 -41.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028287150.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.895 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds