Wall clock time and date at job start Tue Mar 31 2020 11:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99817 * 2 1 4 4 H 1.48499 * 109.47108 * 264.58004 * 3 2 1 5 5 H 1.48501 * 109.46970 * 24.58411 * 3 2 1 6 6 H 1.48498 * 109.46602 * 144.58155 * 3 2 1 7 7 C 1.38808 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99970 * 339.53981 * 7 2 1 9 9 N 1.36941 * 119.99909 * 159.53835 * 7 2 1 10 10 C 1.47428 * 125.64635 * 328.86523 * 9 7 2 11 11 C 1.54910 * 104.83000 * 204.08836 * 10 9 7 12 12 C 1.55153 * 101.58266 * 322.99499 * 11 10 9 13 13 C 1.47316 * 125.61486 * 148.64291 * 9 7 2 14 14 H 1.08997 * 109.85201 * 59.57930 * 13 9 7 15 15 C 1.53003 * 110.06302 * 298.32106 * 13 9 7 16 16 N 1.46502 * 109.47214 * 61.31749 * 15 13 9 17 17 C 1.34775 * 119.99799 * 185.80510 * 16 15 13 18 18 O 1.21280 * 120.00125 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99727 * 180.02562 * 17 16 15 20 20 H 1.09003 * 110.73156 * 300.69728 * 19 17 16 21 21 C 1.54364 * 110.82330 * 177.29286 * 19 17 16 22 22 C 1.51218 * 105.12154 * 268.06756 * 21 19 17 23 23 C 1.38735 * 130.69585 * 162.86647 * 22 21 19 24 24 C 1.38582 * 118.56285 * 180.02562 * 23 22 21 25 25 C 1.38230 * 118.98396 * 0.02562 * 24 23 22 26 26 N 1.31687 * 120.80278 * 359.97438 * 25 24 23 27 27 C 1.32301 * 122.03302 * 359.97438 * 26 25 24 28 28 C 1.52007 * 130.09402 * 180.02562 * 27 26 25 29 29 H 0.97008 * 119.99991 * 359.97438 * 1 2 3 30 30 H 1.09002 * 110.36287 * 85.25295 * 10 9 7 31 31 H 1.08991 * 110.45975 * 322.97941 * 10 9 7 32 32 H 1.08997 * 111.00050 * 204.91720 * 11 10 9 33 33 H 1.08999 * 111.03348 * 81.08238 * 11 10 9 34 34 H 1.08998 * 110.71948 * 153.86444 * 12 11 10 35 35 H 1.08998 * 110.72166 * 276.95542 * 12 11 10 36 36 H 1.09000 * 109.47058 * 181.32040 * 15 13 9 37 37 H 1.09006 * 109.47054 * 301.31904 * 15 13 9 38 38 H 0.97003 * 119.99781 * 5.80564 * 16 15 13 39 39 H 1.08997 * 110.31224 * 26.98225 * 21 19 17 40 40 H 1.09004 * 110.31426 * 149.15247 * 21 19 17 41 41 H 1.08001 * 120.72073 * 0.02807 * 23 22 21 42 42 H 1.07994 * 120.50945 * 180.02562 * 24 23 22 43 43 H 1.07998 * 119.59821 * 179.97438 * 25 24 23 44 44 H 1.09001 * 110.35827 * 78.35902 * 28 27 26 45 45 H 1.08992 * 110.47546 * 316.06372 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6122 1.9804 -1.3938 5 1 1.3950 2.6830 0.5825 6 1 3.4857 1.4759 0.8114 7 6 2.0102 -1.2021 -0.0005 8 1 1.5213 -2.1081 0.3260 9 7 3.3148 -1.2393 -0.4151 10 6 3.9178 -0.3613 -1.4345 11 6 5.1319 -1.1571 -1.9752 12 6 5.6473 -1.8523 -0.6874 13 6 4.3487 -2.1606 0.0874 14 1 4.0452 -3.1917 -0.0934 15 6 4.5700 -1.9351 1.5844 16 7 3.3260 -2.2083 2.3085 17 6 3.2486 -1.9629 3.6315 18 8 4.2086 -1.5155 4.2224 19 6 1.9692 -2.2445 4.3764 20 1 1.1444 -1.6674 3.9584 21 6 2.1356 -1.9519 5.8829 22 6 2.5623 -3.2670 6.4954 23 6 3.1503 -3.5457 7.7207 24 6 3.4409 -4.8646 8.0314 25 6 3.1366 -5.8518 7.1131 26 7 2.5784 -5.5504 5.9590 27 6 2.2847 -4.3042 5.6258 28 6 1.6470 -3.7535 4.3606 29 1 -0.4850 0.8401 0.0004 30 1 4.2481 0.5738 -0.9822 31 1 3.2063 -0.1636 -2.2361 32 1 5.8867 -0.4867 -2.3861 33 1 4.8192 -1.8917 -2.7172 34 1 6.1782 -2.7723 -0.9319 35 1 6.2870 -1.1799 -0.1158 36 1 5.3526 -2.6048 1.9410 37 1 4.8705 -0.9014 1.7556 38 1 2.5582 -2.5659 1.8357 39 1 2.9042 -1.1948 6.0387 40 1 1.1885 -1.6243 6.3116 41 1 3.3765 -2.7520 8.4174 42 1 3.8983 -5.1172 8.9766 43 1 3.3592 -6.8829 7.3448 44 1 0.5686 -3.9106 4.3802 45 1 2.0824 -4.2231 3.4787 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028287150.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:57 Heat of formation + Delta-G solvation = -0.962687 kcal Electronic energy + Delta-G solvation = -26786.712777 eV Core-core repulsion = 23189.355541 eV Total energy + Delta-G solvation = -3597.357236 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.96743 -40.54780 -39.42414 -36.86494 -35.48043 -34.62876 -33.57630 -31.77964 -31.34938 -30.14303 -28.77750 -26.75946 -25.88638 -24.54999 -22.96994 -22.78350 -22.20601 -21.33312 -20.49348 -19.02165 -18.15966 -17.70379 -17.24699 -17.03213 -16.99858 -16.91242 -16.04441 -15.73979 -15.55491 -15.21075 -14.91455 -14.66712 -14.51886 -14.14393 -14.06518 -13.81113 -13.75608 -13.42076 -13.13650 -13.02924 -12.82721 -12.74479 -12.69078 -12.49298 -12.38679 -12.29413 -12.03676 -11.79591 -11.67931 -11.35157 -10.80394 -10.71344 -10.67148 -10.27092 -9.90859 -9.65660 -8.88620 -8.18020 -5.49193 0.15154 0.34621 1.26728 1.37065 1.44566 1.67069 2.33983 2.42329 2.80095 2.97217 3.10886 3.30470 3.43206 3.62726 3.82193 3.87930 3.92848 4.01913 4.06563 4.16335 4.22012 4.31097 4.39061 4.45516 4.47927 4.60728 4.64666 4.67953 4.74705 4.79934 4.80420 4.86283 4.95329 5.00575 5.01420 5.05256 5.15085 5.21323 5.28302 5.31828 5.47844 5.61642 5.79106 5.81570 6.14429 6.68184 6.79907 7.03399 7.31680 7.56413 8.20100 9.00751 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.003955 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.573362 B = 7077.599572 C = 7768.604433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.008 4.008 3 Si 0.922 3.078 4 H -0.277 1.277 5 H -0.313 1.313 6 H -0.287 1.287 7 C -0.216 4.216 8 H 0.074 0.926 9 N -0.617 5.617 10 C 0.106 3.894 11 C -0.117 4.117 12 C -0.116 4.116 13 C 0.140 3.860 14 H 0.061 0.939 15 C 0.119 3.881 16 N -0.700 5.700 17 C 0.513 3.487 18 O -0.591 6.591 19 C -0.110 4.110 20 H 0.126 0.874 21 C -0.061 4.061 22 C -0.151 4.151 23 C -0.074 4.074 24 C -0.167 4.167 25 C 0.085 3.915 26 N -0.508 5.508 27 C 0.093 3.907 28 C -0.053 4.053 29 H 0.260 0.740 30 H 0.005 0.995 31 H 0.039 0.961 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.033 0.967 38 H 0.411 0.589 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.153 0.847 42 H 0.172 0.828 43 H 0.184 0.816 44 H 0.118 0.882 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.850 -8.934 10.274 15.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.205 4.205 3 Si 0.753 3.247 4 H -0.203 1.203 5 H -0.242 1.242 6 H -0.213 1.213 7 C -0.345 4.345 8 H 0.091 0.909 9 N -0.342 5.342 10 C -0.019 4.019 11 C -0.155 4.155 12 C -0.154 4.154 13 C 0.034 3.966 14 H 0.079 0.921 15 C -0.007 4.007 16 N -0.351 5.351 17 C 0.300 3.700 18 O -0.474 6.474 19 C -0.131 4.131 20 H 0.144 0.856 21 C -0.099 4.099 22 C -0.153 4.153 23 C -0.100 4.100 24 C -0.186 4.186 25 C -0.072 4.072 26 N -0.217 5.217 27 C -0.043 4.043 28 C -0.091 4.091 29 H 0.070 0.930 30 H 0.023 0.977 31 H 0.057 0.943 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.122 0.878 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.250 0.750 39 H 0.098 0.902 40 H 0.131 0.869 41 H 0.171 0.829 42 H 0.190 0.810 43 H 0.201 0.799 44 H 0.137 0.863 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.111 -9.218 10.073 15.881 hybrid contribution -0.149 1.973 0.378 2.014 sum 7.962 -7.245 10.451 15.004 Atomic orbital electron populations 1.69892 1.06569 1.26831 1.55219 1.25616 0.95369 0.99288 1.00180 0.86228 0.77930 0.82665 0.77860 1.20326 1.24178 1.21333 1.18390 0.84685 0.93153 1.38297 0.90850 1.45109 1.06325 1.40482 1.42329 1.21984 0.95456 0.93255 0.91189 1.22673 0.96151 0.99421 0.97263 1.22553 0.95030 1.02138 0.95703 1.21630 0.90129 0.94744 0.90140 0.92137 1.21835 0.86100 0.99130 0.93615 1.46064 1.16792 1.64257 1.07993 1.20792 0.89831 0.76786 0.82565 1.90583 1.40154 1.47757 1.68860 1.22016 0.96130 0.98261 0.96703 0.85601 1.20861 1.03182 0.94506 0.91317 1.21593 1.00087 0.97453 0.96141 1.21448 0.95025 0.98310 0.95179 1.22446 1.01197 0.92632 1.02343 1.23200 0.94264 1.01576 0.88137 1.66827 1.12951 1.21551 1.20420 1.22078 0.96463 0.88847 0.96951 1.20997 1.02452 0.91370 0.94242 0.93035 0.97698 0.94290 0.89033 0.89974 0.87768 0.91099 0.91462 0.94874 0.75036 0.90171 0.86858 0.82935 0.81016 0.79865 0.86349 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.78 13.97 21.65 0.30 -54.48 16 2 C -0.01 -0.42 5.44 84.86 0.46 0.04 16 3 Si 0.92 46.49 24.60 68.60 1.69 48.18 16 4 H -0.28 -13.39 6.96 99.48 0.69 -12.70 16 5 H -0.31 -16.19 7.11 99.48 0.71 -15.48 16 6 H -0.29 -14.85 7.03 99.48 0.70 -14.15 16 7 C -0.22 -10.93 8.56 84.03 0.72 -10.21 16 8 H 0.07 3.84 6.95 -2.91 -0.02 3.82 16 9 N -0.62 -26.67 2.76 -667.56 -1.84 -28.51 16 10 C 0.11 4.22 4.87 86.85 0.42 4.64 16 11 C -0.12 -3.28 7.09 31.98 0.23 -3.06 16 12 C -0.12 -3.10 6.47 31.78 0.21 -2.89 16 13 C 0.14 4.82 3.36 45.28 0.15 4.97 16 14 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 15 C 0.12 4.39 5.19 86.38 0.45 4.84 16 16 N -0.70 -26.60 4.60 -463.05 -2.13 -28.72 16 17 C 0.51 19.65 7.12 87.66 0.62 20.27 16 18 O -0.59 -26.06 15.50 -3.03 -0.05 -26.10 16 19 C -0.11 -3.36 3.45 -10.63 -0.04 -3.40 16 20 H 0.13 3.76 8.14 -2.39 -0.02 3.74 16 21 C -0.06 -1.67 6.10 30.48 0.19 -1.49 16 22 C -0.15 -4.14 6.16 -19.60 -0.12 -4.26 16 23 C -0.07 -1.64 10.17 22.47 0.23 -1.42 16 24 C -0.17 -3.11 10.12 22.35 0.23 -2.88 16 25 C 0.09 1.86 11.18 84.71 0.95 2.81 16 26 N -0.51 -14.73 10.35 -182.44 -1.89 -16.62 16 27 C 0.09 2.75 7.33 42.89 0.31 3.07 16 28 C -0.05 -1.46 6.33 30.71 0.19 -1.27 16 29 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 30 H 0.01 0.23 5.50 -2.39 -0.01 0.22 16 31 H 0.04 1.67 7.92 -2.39 -0.02 1.65 16 32 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.07 1.87 7.85 -2.39 -0.02 1.85 16 36 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.03 1.41 8.13 -2.38 -0.02 1.39 16 38 H 0.41 15.59 6.01 -92.71 -0.56 15.03 16 39 H 0.08 2.47 6.99 -2.39 -0.02 2.45 16 40 H 0.11 2.47 8.14 -2.38 -0.02 2.45 16 41 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 42 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 43 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 44 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 45 H 0.08 2.38 7.66 -2.39 -0.02 2.36 16 Total: -1.00 -71.23 356.43 1.70 -69.52 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: 0.42 Total: 26.96 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 5.20 Total: 9.77 kcal Atomic # 7 Polarization: -122.77 SS G_CDS: -5.56 Total: -128.33 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.05 Total: -26.10 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.69 Total: 48.18 kcal Total: -71.23 1.70 -69.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028287150.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.559 kcal (2) G-P(sol) polarization free energy of solvation -71.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds