Wall clock time and date at job start Tue Mar 31 2020 11:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86801 * 119.99992 * 2 1 4 4 H 1.48497 * 109.47150 * 270.00323 * 3 2 1 5 5 H 1.48500 * 109.47004 * 30.00414 * 3 2 1 6 6 H 1.48502 * 109.47238 * 150.00106 * 3 2 1 7 7 C 1.38813 * 120.00419 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00569 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99700 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.64651 * 13.79084 * 9 7 2 11 11 C 1.54905 * 104.82947 * 155.83665 * 10 9 7 12 12 C 1.55154 * 101.58369 * 37.00761 * 11 10 9 13 13 C 1.47023 * 125.64593 * 193.75171 * 9 7 2 14 14 H 1.08995 * 109.87880 * 300.50782 * 13 9 7 15 15 C 1.52994 * 109.88315 * 61.67657 * 13 9 7 16 16 N 1.46500 * 109.46861 * 182.33100 * 15 13 9 17 17 C 1.34777 * 120.00108 * 185.09404 * 16 15 13 18 18 O 1.21288 * 119.99956 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00463 * 180.02562 * 17 16 15 20 20 H 1.09002 * 110.72989 * 303.40369 * 19 17 16 21 21 C 1.54365 * 110.82738 * 179.97438 * 19 17 16 22 22 C 1.51219 * 105.12444 * 268.06300 * 21 19 17 23 23 C 1.38745 * 130.69787 * 162.91414 * 22 21 19 24 24 C 1.38578 * 118.55613 * 180.02562 * 23 22 21 25 25 C 1.38227 * 118.98970 * 359.89219 * 24 23 22 26 26 N 1.31683 * 120.80392 * 0.06636 * 25 24 23 27 27 C 1.32296 * 122.03172 * 359.97438 * 26 25 24 28 28 C 1.51474 * 130.14239 * 180.02562 * 27 26 25 29 29 H 0.96997 * 120.00407 * 0.02562 * 1 2 3 30 30 H 1.08994 * 110.36694 * 274.67301 * 10 9 7 31 31 H 1.08995 * 110.36854 * 36.88871 * 10 9 7 32 32 H 1.09005 * 111.00415 * 278.93223 * 11 10 9 33 33 H 1.09009 * 111.00396 * 155.08329 * 11 10 9 34 34 H 1.09001 * 110.72126 * 206.12945 * 12 11 10 35 35 H 1.09004 * 110.71815 * 82.85824 * 12 11 10 36 36 H 1.09000 * 109.47310 * 302.33086 * 15 13 9 37 37 H 1.09000 * 109.47556 * 62.33332 * 15 13 9 38 38 H 0.96998 * 120.00087 * 5.08710 * 16 15 13 39 39 H 1.09006 * 110.30728 * 26.97409 * 21 19 17 40 40 H 1.09003 * 110.31202 * 149.04560 * 21 19 17 41 41 H 1.07994 * 120.72306 * 359.97438 * 23 22 21 42 42 H 1.07994 * 120.50139 * 179.97438 * 24 23 22 43 43 H 1.08003 * 119.59887 * 180.02562 * 25 24 23 44 44 H 1.09001 * 110.29699 * 78.25670 * 28 27 26 45 45 H 1.09000 * 110.29520 * 316.12562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1117 -2.5504 -0.2856 11 6 -0.2573 -4.0151 -0.7682 12 6 0.7667 -4.7456 0.1401 13 6 1.9023 -3.7104 0.2830 14 1 2.6957 -3.9296 -0.4315 15 6 2.4582 -3.7410 1.7080 16 7 3.0798 -5.0431 1.9618 17 6 3.5488 -5.3379 3.1905 18 8 3.4566 -4.5251 4.0859 19 6 4.1887 -6.6771 3.4515 20 1 3.5058 -7.4874 3.1962 21 6 4.6483 -6.7887 4.9209 22 6 6.0835 -6.3122 4.9227 23 6 6.8982 -5.8990 5.9670 24 6 8.1960 -5.5072 5.6795 25 6 8.6319 -5.5439 4.3683 26 7 7.8309 -5.9427 3.4022 27 6 6.5857 -6.3237 3.6355 28 6 5.5177 -6.8105 2.6780 29 1 -0.4850 0.8400 -0.0004 30 1 -0.6984 -2.3889 0.6187 31 1 -0.4238 -1.8587 -1.0680 32 1 0.0159 -4.1092 -1.8192 33 1 -1.2677 -4.3853 -0.5941 34 1 1.1306 -5.6534 -0.3413 35 1 0.3275 -4.9726 1.1116 36 1 3.2032 -2.9539 1.8244 37 1 1.6468 -3.5812 2.4181 38 1 3.1538 -5.6931 1.2456 39 1 4.0367 -6.1498 5.5582 40 1 4.5911 -7.8238 5.2577 41 1 6.5288 -5.8823 6.9816 42 1 8.8571 -5.1795 6.4681 43 1 9.6416 -5.2411 4.1331 44 1 5.6961 -7.8519 2.4103 45 1 5.4991 -6.1874 1.7839 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028287155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:06 Heat of formation + Delta-G solvation = -4.561941 kcal Electronic energy + Delta-G solvation = -26054.021201 eV Core-core repulsion = 22456.507890 eV Total energy + Delta-G solvation = -3597.513311 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.98510 -40.56099 -39.29295 -36.88421 -35.77062 -34.42009 -33.57845 -31.55779 -30.99344 -29.89420 -28.75272 -26.81748 -26.04120 -24.54883 -22.87613 -22.75313 -21.99653 -21.27059 -20.72048 -18.91895 -18.21177 -17.71479 -17.29095 -17.05846 -16.70999 -16.54385 -15.85912 -15.78524 -15.76795 -15.38443 -14.75897 -14.60629 -14.25244 -13.97626 -13.80319 -13.71443 -13.64615 -13.43792 -13.10243 -12.99220 -12.89021 -12.78796 -12.67060 -12.49772 -12.28830 -12.05935 -11.87769 -11.71671 -11.48156 -11.38896 -10.88478 -10.69952 -10.68023 -10.28294 -10.06752 -9.64980 -8.88097 -7.90718 -5.27955 0.14756 0.33625 1.41058 1.43098 1.51283 1.63394 2.16823 2.47596 2.78992 3.00584 3.28545 3.45719 3.60393 3.70321 3.87332 3.94930 3.98404 3.99595 4.05391 4.21888 4.27172 4.38284 4.44652 4.47148 4.56050 4.61381 4.73157 4.74557 4.82478 4.88912 4.97010 4.99887 5.02565 5.04335 5.15797 5.20936 5.23220 5.30317 5.39575 5.45770 5.58136 5.66789 5.77985 5.78808 6.21639 6.62358 7.02530 7.07433 7.31731 7.74781 8.39813 9.19763 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.003296 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.665612 B = 8493.707503 C = 9662.105689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.058 4.058 3 Si 0.969 3.031 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.612 5.612 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.110 4.110 13 C 0.147 3.853 14 H 0.050 0.950 15 C 0.131 3.869 16 N -0.705 5.705 17 C 0.508 3.492 18 O -0.591 6.591 19 C -0.097 4.097 20 H 0.166 0.834 21 C -0.064 4.064 22 C -0.155 4.155 23 C -0.079 4.079 24 C -0.173 4.173 25 C 0.081 3.919 26 N -0.511 5.511 27 C 0.087 3.913 28 C -0.056 4.056 29 H 0.248 0.752 30 H -0.010 1.010 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.066 0.934 36 H 0.023 0.977 37 H 0.035 0.965 38 H 0.418 0.582 39 H 0.075 0.925 40 H 0.126 0.874 41 H 0.151 0.849 42 H 0.166 0.834 43 H 0.178 0.822 44 H 0.136 0.864 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.937 -21.571 7.265 25.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.252 4.252 3 Si 0.798 3.202 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.370 4.370 8 H 0.091 0.909 9 N -0.337 5.337 10 C 0.047 3.953 11 C -0.172 4.172 12 C -0.148 4.148 13 C 0.040 3.960 14 H 0.068 0.932 15 C 0.004 3.996 16 N -0.357 5.357 17 C 0.295 3.705 18 O -0.472 6.472 19 C -0.118 4.118 20 H 0.183 0.817 21 C -0.102 4.102 22 C -0.157 4.157 23 C -0.105 4.105 24 C -0.192 4.192 25 C -0.076 4.076 26 N -0.221 5.221 27 C -0.051 4.051 28 C -0.093 4.093 29 H 0.057 0.943 30 H 0.008 0.992 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.054 0.946 38 H 0.255 0.745 39 H 0.094 0.906 40 H 0.144 0.856 41 H 0.168 0.832 42 H 0.183 0.817 43 H 0.195 0.805 44 H 0.154 0.846 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.130 -20.765 7.005 24.579 hybrid contribution 0.078 1.780 0.828 1.965 sum 11.209 -18.985 7.833 23.397 Atomic orbital electron populations 1.70128 1.06184 1.25376 1.57550 1.25632 0.96505 1.00858 1.02168 0.85220 0.77571 0.79706 0.77715 1.20635 1.21949 1.20214 1.19273 0.90619 0.83806 1.43304 0.90928 1.44761 1.06405 1.01969 1.80543 1.21295 0.83898 0.93775 0.96324 1.22873 0.99700 0.95146 0.99464 1.22596 0.94819 0.97320 1.00063 1.21353 0.96097 0.86709 0.91822 0.93200 1.21611 0.95349 0.84000 0.98601 1.45816 1.59975 1.17707 1.12224 1.21266 0.77346 0.89977 0.81875 1.90691 1.58709 1.52027 1.45728 1.22123 0.97713 0.94789 0.97157 0.81695 1.20948 0.90146 1.03442 0.95616 1.21769 0.98414 1.00382 0.95129 1.21466 0.93565 0.95363 1.00076 1.22418 0.96837 1.01053 0.98893 1.23107 0.99842 0.95780 0.88868 1.66831 1.05014 1.11725 1.38485 1.22291 0.91733 0.95932 0.95105 1.21042 0.87708 1.04511 0.96078 0.94268 0.99198 0.94458 0.91120 0.89813 0.87289 0.91494 0.95871 0.94607 0.74504 0.90603 0.85583 0.83157 0.81654 0.80503 0.84588 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.59 10.54 21.65 0.23 -57.36 16 2 C -0.06 -3.36 5.47 84.86 0.46 -2.90 16 3 Si 0.97 47.33 29.55 68.60 2.03 49.35 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 7 C -0.24 -13.71 9.77 84.03 0.82 -12.89 16 8 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.61 -31.05 3.13 -668.30 -2.09 -33.14 16 10 C 0.17 8.38 5.43 86.85 0.47 8.85 16 11 C -0.13 -4.51 7.08 31.98 0.23 -4.29 16 12 C -0.11 -3.20 6.10 31.78 0.19 -3.00 16 13 C 0.15 5.61 3.22 45.34 0.15 5.76 16 14 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 15 C 0.13 5.12 5.07 86.38 0.44 5.56 16 16 N -0.70 -19.29 5.21 -463.07 -2.41 -21.70 16 17 C 0.51 14.61 7.08 87.66 0.62 15.23 16 18 O -0.59 -23.76 15.52 -3.05 -0.05 -23.80 16 19 C -0.10 -1.64 3.47 -10.62 -0.04 -1.68 16 20 H 0.17 1.25 8.14 -2.39 -0.02 1.23 16 21 C -0.06 -1.16 6.08 30.48 0.19 -0.98 16 22 C -0.16 -3.51 6.16 -19.59 -0.12 -3.63 16 23 C -0.08 -1.61 10.17 22.47 0.23 -1.38 16 24 C -0.17 -3.18 10.12 22.35 0.23 -2.95 16 25 C 0.08 1.74 11.18 84.71 0.95 2.68 16 26 N -0.51 -13.64 10.35 -182.98 -1.89 -15.53 16 27 C 0.09 2.11 7.32 42.72 0.31 2.42 16 28 C -0.06 -0.95 6.30 30.55 0.19 -0.76 16 29 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 30 H -0.01 -0.55 8.08 -2.39 -0.02 -0.57 16 31 H 0.04 2.06 6.86 -2.39 -0.02 2.04 16 32 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 33 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 34 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.07 1.93 7.81 -2.38 -0.02 1.91 16 36 H 0.02 1.08 7.92 -2.39 -0.02 1.06 16 37 H 0.04 1.60 8.08 -2.39 -0.02 1.58 16 38 H 0.42 7.76 8.33 -92.71 -0.77 6.99 16 39 H 0.08 1.76 7.03 -2.38 -0.02 1.74 16 40 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 42 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 43 H 0.18 2.71 8.06 -2.91 -0.02 2.69 16 44 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.08 1.57 7.80 -2.39 -0.02 1.55 16 Total: -1.00 -82.48 364.85 1.35 -81.14 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.22 Total: 14.99 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 5.32 Total: 6.06 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -6.17 Total: -127.73 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.05 Total: -23.80 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.35 kcal Total: -82.48 1.35 -81.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028287155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.574 kcal (2) G-P(sol) polarization free energy of solvation -82.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds