Wall clock time and date at job start Tue Mar 31 2020 11:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 120.00205 * 2 1 4 4 H 1.48494 * 109.47047 * 274.98453 * 3 2 1 5 5 H 1.48501 * 109.47030 * 34.98495 * 3 2 1 6 6 H 1.48499 * 109.47424 * 154.98415 * 3 2 1 7 7 C 1.38815 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99975 * 186.81471 * 7 2 1 9 9 N 1.36940 * 119.99534 * 6.80695 * 7 2 1 10 10 C 1.47014 * 125.65131 * 353.81653 * 9 7 2 11 11 C 1.54373 * 107.29171 * 181.12582 * 10 9 7 12 12 C 1.55163 * 102.91631 * 22.13606 * 11 10 9 13 13 H 1.09004 * 111.00087 * 82.64285 * 12 11 10 14 14 C 1.52997 * 111.00205 * 206.45197 * 12 11 10 15 15 N 1.46499 * 109.46847 * 181.82199 * 14 12 11 16 16 C 1.34784 * 119.99946 * 179.97438 * 15 14 12 17 17 O 1.21280 * 119.99907 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99930 * 179.97438 * 16 15 14 19 19 H 1.08994 * 110.25502 * 59.30267 * 18 16 15 20 20 C 1.54331 * 110.29259 * 181.35587 * 18 16 15 21 21 C 1.54366 * 102.39165 * 92.60369 * 20 18 16 22 22 C 1.51225 * 105.11702 * 26.29140 * 21 20 18 23 23 C 1.38736 * 130.68716 * 162.87794 * 22 21 20 24 24 C 1.38577 * 118.55674 * 179.97438 * 23 22 21 25 25 C 1.38228 * 118.98565 * 0.02562 * 24 23 22 26 26 N 1.31683 * 120.80452 * 359.97438 * 25 24 23 27 27 C 1.32109 * 122.10242 * 0.05746 * 26 25 24 28 28 C 1.47429 * 125.64258 * 173.85466 * 9 7 2 29 29 H 0.97005 * 120.00497 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.88463 * 300.50818 * 10 9 7 31 31 H 1.09000 * 109.88705 * 61.67344 * 10 9 7 32 32 H 1.09003 * 110.70593 * 263.79860 * 11 10 9 33 33 H 1.08996 * 110.75904 * 140.50365 * 11 10 9 34 34 H 1.09003 * 109.47677 * 301.82091 * 14 12 11 35 35 H 1.08996 * 109.47325 * 61.82666 * 14 12 11 36 36 H 0.97000 * 120.00165 * 0.02562 * 15 14 12 37 37 H 1.09003 * 110.82406 * 210.82911 * 20 18 16 38 38 H 1.09008 * 110.82548 * 334.37812 * 20 18 16 39 39 H 1.09001 * 110.31293 * 145.20706 * 21 20 18 40 40 H 1.09003 * 110.31043 * 267.37746 * 21 20 18 41 41 H 1.08004 * 120.72284 * 359.95058 * 23 22 21 42 42 H 1.07999 * 120.50953 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.59658 * 179.97438 * 25 24 23 44 44 H 1.08994 * 110.36998 * 37.00389 * 28 9 7 45 45 H 1.08995 * 110.45942 * 274.72307 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3947 5 1 1.5043 2.6200 0.8028 6 1 3.5964 1.4121 0.5920 7 6 2.0102 -1.2022 -0.0005 8 1 3.0845 -1.2055 0.1104 9 7 1.3327 -2.3838 -0.1416 10 6 -0.1293 -2.5349 -0.1723 11 6 -0.4320 -4.0416 -0.3179 12 6 0.8673 -4.7086 0.2061 13 1 0.8623 -4.7721 1.2943 14 6 1.0653 -6.0905 -0.4200 15 7 2.2756 -6.7066 0.1295 16 6 2.6514 -7.9349 -0.2788 17 8 1.9878 -8.5299 -1.1014 18 6 3.8966 -8.5685 0.2860 19 1 3.8134 -8.6647 1.3685 20 6 4.1330 -9.9510 -0.3579 21 6 5.0610 -9.6101 -1.5434 22 6 5.7822 -8.3471 -1.1292 23 6 6.9353 -7.7589 -1.6284 24 6 7.3814 -6.5808 -1.0508 25 6 6.6650 -6.0359 -0.0017 26 7 5.5742 -6.6220 0.4464 27 6 5.1159 -7.7457 -0.0757 28 6 1.9488 -3.7153 -0.2872 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5604 -2.1589 0.7556 31 1 -0.5407 -1.9900 -1.0220 32 1 -0.6042 -4.3009 -1.3625 33 1 -1.2861 -4.3253 0.2969 34 1 0.2034 -6.7185 -0.1945 35 1 1.1680 -5.9886 -1.5003 36 1 2.8060 -6.2309 0.7876 37 1 4.6290 -10.6244 0.3412 38 1 3.1949 -10.3796 -0.7109 39 1 5.7751 -10.4167 -1.7091 40 1 4.4739 -9.4324 -2.4445 41 1 7.4738 -8.2095 -2.4490 42 1 8.2755 -6.0962 -1.4142 43 1 7.0040 -5.1183 0.4560 44 1 2.8427 -3.7895 0.3321 45 1 2.1942 -3.9094 -1.3312 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028765272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:24 Heat of formation + Delta-G solvation = 18.554618 kcal Electronic energy + Delta-G solvation = -26194.924595 eV Core-core repulsion = 22598.413694 eV Total energy + Delta-G solvation = -3596.510902 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.25381 -39.40802 -37.68223 -36.11202 -34.59475 -32.98643 -32.39784 -29.97517 -29.54485 -28.80146 -27.81005 -25.46418 -23.83506 -23.61388 -22.37221 -21.56266 -20.36009 -19.91710 -19.48888 -17.63378 -16.97040 -16.73392 -16.32376 -16.01356 -15.44099 -15.15381 -14.74570 -14.58937 -14.29827 -13.77557 -13.64617 -13.61428 -13.28422 -13.16263 -12.83988 -12.31375 -12.19475 -12.02920 -11.92277 -11.75474 -11.49790 -11.39870 -11.31804 -10.88511 -10.77942 -10.42669 -10.17597 -10.06283 -9.94121 -9.86229 -9.77154 -9.61407 -9.49298 -8.92448 -8.85519 -8.55852 -6.79681 -5.70242 -3.02371 0.84626 1.07458 2.57060 3.21028 3.41298 3.46315 3.48386 3.60027 3.76139 4.11500 4.51423 4.51839 4.59526 4.71931 4.72476 4.92450 5.01794 5.12175 5.17643 5.27849 5.33416 5.37793 5.44346 5.52834 5.57576 5.59313 5.72126 5.77302 5.85023 5.93783 5.94529 6.01882 6.07379 6.09649 6.38120 6.47288 6.49667 6.55266 6.57910 6.73753 6.95638 7.58093 7.59638 7.66536 7.79089 7.84580 8.24752 8.28530 9.24401 9.85050 10.52104 11.42064 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015172 B = 0.003474 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.019423 B = 8057.988821 C = 9586.350925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.118 4.118 13 H 0.079 0.921 14 C 0.132 3.868 15 N -0.716 5.716 16 C 0.525 3.475 17 O -0.542 6.542 18 C -0.061 4.061 19 H 0.115 0.885 20 C -0.104 4.104 21 C -0.079 4.079 22 C -0.141 4.141 23 C -0.067 4.067 24 C -0.168 4.168 25 C 0.107 3.893 26 N -0.470 5.470 27 C 0.121 3.879 28 C 0.144 3.856 29 H 0.252 0.748 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.408 0.592 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.161 0.839 44 H 0.036 0.964 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.612 -20.094 -0.333 23.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.137 4.137 13 H 0.098 0.902 14 C 0.009 3.991 15 N -0.367 5.367 16 C 0.309 3.691 17 O -0.419 6.419 18 C -0.083 4.083 19 H 0.133 0.867 20 C -0.142 4.142 21 C -0.116 4.116 22 C -0.143 4.143 23 C -0.093 4.093 24 C -0.187 4.187 25 C -0.051 4.051 26 N -0.178 5.178 27 C -0.018 4.018 28 C 0.018 3.982 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.243 0.757 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.150 0.850 42 H 0.156 0.844 43 H 0.178 0.822 44 H 0.055 0.945 45 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 10.616 -19.863 -0.209 22.523 hybrid contribution 1.295 1.038 -0.381 1.703 sum 11.912 -18.825 -0.590 22.285 Atomic orbital electron populations 1.69977 1.04913 1.24989 1.56877 1.24816 0.95691 0.97629 1.02241 0.86131 0.78696 0.83684 0.77484 1.21661 1.21771 1.20636 1.19063 0.91074 0.82603 1.42928 0.90509 1.44477 1.01673 1.01130 1.85941 1.21159 0.84437 0.88273 1.00895 1.22865 0.95430 0.99158 0.99895 1.22613 0.98549 0.92417 1.00154 0.90219 1.21413 0.86137 0.93218 0.98352 1.46077 1.28116 1.17421 1.45057 1.20052 0.85553 0.81622 0.81831 1.90672 1.55282 1.62799 1.33186 1.20771 0.89774 0.94727 1.03040 0.86723 1.22269 1.01458 0.93810 0.96658 1.20992 0.97443 0.93722 0.99484 1.21560 0.96130 0.99006 0.97590 1.21068 0.94650 0.94825 0.98777 1.22130 1.01781 0.96668 0.98159 1.22682 0.89961 0.98683 0.93732 1.66695 1.13189 1.08448 1.29484 1.21322 0.95184 0.91774 0.93495 1.21531 0.93945 0.85800 0.96911 0.93788 0.93942 0.93628 0.92240 0.91961 0.91577 0.91519 0.75706 0.90022 0.87983 0.90158 0.89326 0.84961 0.84394 0.82165 0.94549 0.96582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.36 10.36 55.49 0.58 -26.79 16 2 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 3 Si 0.91 22.31 29.56 -169.99 -5.02 17.29 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.23 -6.48 10.26 -15.06 -0.15 -6.63 16 8 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 9 N -0.61 -15.78 3.39 -170.05 -0.58 -16.36 16 10 C 0.18 4.36 5.38 -3.04 -0.02 4.34 16 11 C -0.13 -2.52 6.43 -24.87 -0.16 -2.68 16 12 C -0.12 -2.05 3.07 -88.47 -0.27 -2.32 16 13 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 14 C 0.13 2.03 5.12 -4.04 -0.02 2.01 16 15 N -0.72 -10.13 5.39 -60.29 -0.33 -10.45 16 16 C 0.52 7.31 7.16 -10.98 -0.08 7.23 16 17 O -0.54 -8.93 15.46 5.56 0.09 -8.85 16 18 C -0.06 -0.66 3.26 -91.84 -0.30 -0.96 16 19 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 20 C -0.10 -0.92 6.39 -25.32 -0.16 -1.08 16 21 C -0.08 -0.70 6.76 -26.91 -0.18 -0.88 16 22 C -0.14 -1.50 6.16 -104.12 -0.64 -2.14 16 23 C -0.07 -0.63 10.17 -39.27 -0.40 -1.03 16 24 C -0.17 -1.53 10.12 -39.46 -0.40 -1.93 16 25 C 0.11 1.16 11.18 -17.62 -0.20 0.96 16 26 N -0.47 -6.02 10.34 -9.17 -0.09 -6.12 16 27 C 0.12 1.45 6.58 -82.03 -0.54 0.91 16 28 C 0.14 3.05 6.56 -2.53 -0.02 3.03 16 29 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.04 1.15 7.55 -51.93 -0.39 0.75 16 31 H 0.05 1.25 7.36 -51.93 -0.38 0.86 16 32 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.11 8.03 -51.93 -0.42 0.69 16 36 H 0.41 5.57 8.43 -40.82 -0.34 5.23 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.99 6.95 -51.92 -0.36 0.62 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 42 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.02 0.36 7.95 -51.93 -0.41 -0.05 16 LS Contribution 365.67 15.07 5.51 5.51 Total: -1.00 -33.57 365.67 -10.41 -43.98 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.92 Total: 3.27 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -3.63 Total: -1.49 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -0.42 Total: -59.71 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.57 -10.41 -43.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028765272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.532 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds