Wall clock time and date at job start Tue Mar 31 2020 11:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 120.00205 * 2 1 4 4 H 1.48494 * 109.47047 * 274.98453 * 3 2 1 5 5 H 1.48501 * 109.47030 * 34.98495 * 3 2 1 6 6 H 1.48499 * 109.47424 * 154.98415 * 3 2 1 7 7 C 1.38815 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99975 * 186.81471 * 7 2 1 9 9 N 1.36940 * 119.99534 * 6.80695 * 7 2 1 10 10 C 1.47014 * 125.65131 * 353.81653 * 9 7 2 11 11 C 1.54373 * 107.29171 * 181.12582 * 10 9 7 12 12 C 1.55163 * 102.91631 * 22.13606 * 11 10 9 13 13 H 1.09004 * 111.00087 * 82.64285 * 12 11 10 14 14 C 1.52997 * 111.00205 * 206.45197 * 12 11 10 15 15 N 1.46499 * 109.46847 * 181.82199 * 14 12 11 16 16 C 1.34784 * 119.99946 * 179.97438 * 15 14 12 17 17 O 1.21280 * 119.99907 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99930 * 179.97438 * 16 15 14 19 19 H 1.08994 * 110.25502 * 59.30267 * 18 16 15 20 20 C 1.54331 * 110.29259 * 181.35587 * 18 16 15 21 21 C 1.54366 * 102.39165 * 92.60369 * 20 18 16 22 22 C 1.51225 * 105.11702 * 26.29140 * 21 20 18 23 23 C 1.38736 * 130.68716 * 162.87794 * 22 21 20 24 24 C 1.38577 * 118.55674 * 179.97438 * 23 22 21 25 25 C 1.38228 * 118.98565 * 0.02562 * 24 23 22 26 26 N 1.31683 * 120.80452 * 359.97438 * 25 24 23 27 27 C 1.32109 * 122.10242 * 0.05746 * 26 25 24 28 28 C 1.47429 * 125.64258 * 173.85466 * 9 7 2 29 29 H 0.97005 * 120.00497 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.88463 * 300.50818 * 10 9 7 31 31 H 1.09000 * 109.88705 * 61.67344 * 10 9 7 32 32 H 1.09003 * 110.70593 * 263.79860 * 11 10 9 33 33 H 1.08996 * 110.75904 * 140.50365 * 11 10 9 34 34 H 1.09003 * 109.47677 * 301.82091 * 14 12 11 35 35 H 1.08996 * 109.47325 * 61.82666 * 14 12 11 36 36 H 0.97000 * 120.00165 * 0.02562 * 15 14 12 37 37 H 1.09003 * 110.82406 * 210.82911 * 20 18 16 38 38 H 1.09008 * 110.82548 * 334.37812 * 20 18 16 39 39 H 1.09001 * 110.31293 * 145.20706 * 21 20 18 40 40 H 1.09003 * 110.31043 * 267.37746 * 21 20 18 41 41 H 1.08004 * 120.72284 * 359.95058 * 23 22 21 42 42 H 1.07999 * 120.50953 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.59658 * 179.97438 * 25 24 23 44 44 H 1.08994 * 110.36998 * 37.00389 * 28 9 7 45 45 H 1.08995 * 110.45942 * 274.72307 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3947 5 1 1.5043 2.6200 0.8028 6 1 3.5964 1.4121 0.5920 7 6 2.0102 -1.2022 -0.0005 8 1 3.0845 -1.2055 0.1104 9 7 1.3327 -2.3838 -0.1416 10 6 -0.1293 -2.5349 -0.1723 11 6 -0.4320 -4.0416 -0.3179 12 6 0.8673 -4.7086 0.2061 13 1 0.8623 -4.7721 1.2943 14 6 1.0653 -6.0905 -0.4200 15 7 2.2756 -6.7066 0.1295 16 6 2.6514 -7.9349 -0.2788 17 8 1.9878 -8.5299 -1.1014 18 6 3.8966 -8.5685 0.2860 19 1 3.8134 -8.6647 1.3685 20 6 4.1330 -9.9510 -0.3579 21 6 5.0610 -9.6101 -1.5434 22 6 5.7822 -8.3471 -1.1292 23 6 6.9353 -7.7589 -1.6284 24 6 7.3814 -6.5808 -1.0508 25 6 6.6650 -6.0359 -0.0017 26 7 5.5742 -6.6220 0.4464 27 6 5.1159 -7.7457 -0.0757 28 6 1.9488 -3.7153 -0.2872 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5604 -2.1589 0.7556 31 1 -0.5407 -1.9900 -1.0220 32 1 -0.6042 -4.3009 -1.3625 33 1 -1.2861 -4.3253 0.2969 34 1 0.2034 -6.7185 -0.1945 35 1 1.1680 -5.9886 -1.5003 36 1 2.8060 -6.2309 0.7876 37 1 4.6290 -10.6244 0.3412 38 1 3.1949 -10.3796 -0.7109 39 1 5.7751 -10.4167 -1.7091 40 1 4.4739 -9.4324 -2.4445 41 1 7.4738 -8.2095 -2.4490 42 1 8.2755 -6.0962 -1.4142 43 1 7.0040 -5.1183 0.4560 44 1 2.8427 -3.7895 0.3321 45 1 2.1942 -3.9094 -1.3312 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028765272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:23 Heat of formation + Delta-G solvation = -2.813146 kcal Electronic energy + Delta-G solvation = -26195.851171 eV Core-core repulsion = 22598.413694 eV Total energy + Delta-G solvation = -3597.437478 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.08542 -40.48095 -39.30227 -36.97811 -35.99576 -34.38043 -33.63830 -31.71676 -30.40658 -30.11378 -29.03396 -27.24330 -25.35331 -24.44917 -23.33406 -22.42604 -21.94024 -21.48123 -20.71944 -18.97157 -18.44445 -17.76386 -17.36589 -17.07068 -16.73471 -16.36693 -16.26296 -15.75872 -15.57234 -15.32607 -14.70609 -14.51532 -14.38702 -14.18367 -14.02451 -13.84888 -13.73132 -13.42442 -13.10620 -12.94842 -12.79190 -12.69167 -12.66272 -12.23889 -12.06221 -12.01698 -11.92119 -11.87742 -11.58592 -11.48730 -11.14554 -10.71010 -10.66016 -10.29285 -10.09773 -9.67126 -8.91504 -7.87819 -5.22680 0.07578 0.32751 1.44356 1.46674 1.51579 1.55573 2.15454 2.48123 2.80266 2.97287 3.30578 3.37867 3.57193 3.68566 3.80247 3.85200 3.97079 3.99185 4.01658 4.08223 4.18387 4.31078 4.40994 4.46801 4.58570 4.63380 4.65186 4.67657 4.74816 4.83679 4.87296 4.96099 5.02302 5.04730 5.10302 5.16775 5.23802 5.29717 5.33610 5.43168 5.45581 5.66097 5.74582 5.75675 6.18199 6.47873 6.99993 7.08599 7.15131 7.75629 8.41000 9.23266 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015172 B = 0.003474 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.019423 B = 8057.988821 C = 9586.350925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.978 3.022 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.246 4.246 8 H 0.080 0.920 9 N -0.628 5.628 10 C 0.183 3.817 11 C -0.121 4.121 12 C -0.096 4.096 13 H 0.088 0.912 14 C 0.144 3.856 15 N -0.716 5.716 16 C 0.524 3.476 17 O -0.569 6.569 18 C -0.058 4.058 19 H 0.130 0.870 20 C -0.099 4.099 21 C -0.077 4.077 22 C -0.150 4.150 23 C -0.073 4.073 24 C -0.163 4.163 25 C 0.084 3.916 26 N -0.498 5.498 27 C 0.097 3.903 28 C 0.144 3.856 29 H 0.247 0.753 30 H 0.010 0.990 31 H 0.008 0.992 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.410 0.590 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.160 0.840 42 H 0.167 0.833 43 H 0.172 0.828 44 H 0.039 0.961 45 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.404 -21.711 -0.344 25.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.257 4.257 3 Si 0.806 3.194 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.190 1.190 7 C -0.375 4.375 8 H 0.098 0.902 9 N -0.354 5.354 10 C 0.058 3.942 11 C -0.160 4.160 12 C -0.116 4.116 13 H 0.106 0.894 14 C 0.020 3.980 15 N -0.367 5.367 16 C 0.310 3.690 17 O -0.449 6.449 18 C -0.080 4.080 19 H 0.148 0.852 20 C -0.137 4.137 21 C -0.114 4.114 22 C -0.152 4.152 23 C -0.098 4.098 24 C -0.182 4.182 25 C -0.073 4.073 26 N -0.206 5.206 27 C -0.041 4.041 28 C 0.019 3.981 29 H 0.057 0.943 30 H 0.029 0.971 31 H 0.026 0.974 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.246 0.754 37 H 0.127 0.873 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.093 0.907 41 H 0.178 0.822 42 H 0.184 0.816 43 H 0.189 0.811 44 H 0.058 0.942 45 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 12.436 -21.510 -0.213 24.847 hybrid contribution 0.797 1.552 -0.402 1.791 sum 13.233 -19.958 -0.615 23.954 Atomic orbital electron populations 1.70196 1.06356 1.25345 1.57887 1.25680 0.96613 1.01042 1.02395 0.85073 0.77964 0.79142 0.77270 1.21510 1.21937 1.19048 1.19455 0.91583 0.83942 1.42531 0.90168 1.44801 1.02529 1.02318 1.85777 1.20942 0.83750 0.91860 0.97662 1.22734 0.97052 0.94783 1.01422 1.22424 0.96055 0.92527 1.00589 0.89354 1.21182 0.87357 0.92067 0.97378 1.46062 1.27782 1.17722 1.45101 1.20584 0.86100 0.81112 0.81181 1.90656 1.56422 1.63410 1.34413 1.20837 0.87887 0.95337 1.03935 0.85222 1.22310 1.01322 0.92956 0.97094 1.21015 0.97675 0.93910 0.98785 1.21870 0.96565 0.99557 0.97225 1.21474 0.94349 0.94758 0.99229 1.22466 1.02197 0.96453 0.97100 1.23048 0.90100 0.99404 0.94738 1.66648 1.14240 1.09188 1.30546 1.21498 0.95905 0.92151 0.94563 1.21631 0.95107 0.84689 0.96668 0.94340 0.97131 0.97350 0.91088 0.89251 0.90120 0.92722 0.75385 0.87344 0.88901 0.87499 0.90677 0.82209 0.81589 0.81096 0.94223 0.97181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.17 10.36 21.65 0.22 -57.95 16 2 C -0.06 -3.73 5.48 84.86 0.47 -3.26 16 3 Si 0.98 46.41 29.56 68.60 2.03 48.44 16 4 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.25 -14.19 10.26 84.03 0.86 -13.33 16 8 H 0.08 4.43 7.84 -2.91 -0.02 4.41 16 9 N -0.63 -33.30 3.39 -691.90 -2.35 -35.65 16 10 C 0.18 9.25 5.38 86.75 0.47 9.72 16 11 C -0.12 -4.44 6.43 31.80 0.20 -4.24 16 12 C -0.10 -3.24 3.07 -9.40 -0.03 -3.27 16 13 H 0.09 2.87 8.14 -2.38 -0.02 2.85 16 14 C 0.14 4.21 5.12 86.38 0.44 4.65 16 15 N -0.72 -19.48 5.39 -463.05 -2.50 -21.98 16 16 C 0.52 14.07 7.16 87.66 0.63 14.69 16 17 O -0.57 -18.32 15.46 -3.03 -0.05 -18.36 16 18 C -0.06 -1.19 3.26 -11.59 -0.04 -1.22 16 19 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 20 C -0.10 -1.55 6.39 31.51 0.20 -1.35 16 21 C -0.08 -1.20 6.76 30.48 0.21 -1.00 16 22 C -0.15 -2.92 6.16 -19.54 -0.12 -3.04 16 23 C -0.07 -1.18 10.17 22.47 0.23 -0.95 16 24 C -0.16 -2.64 10.12 22.35 0.23 -2.41 16 25 C 0.08 1.74 11.18 84.71 0.95 2.69 16 26 N -0.50 -12.40 10.34 -182.93 -1.89 -14.29 16 27 C 0.10 2.21 6.58 42.80 0.28 2.49 16 28 C 0.14 6.08 6.56 86.85 0.57 6.65 16 29 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 30 H 0.01 0.59 7.55 -2.38 -0.02 0.57 16 31 H 0.01 0.47 7.36 -2.39 -0.02 0.46 16 32 H 0.07 2.45 8.04 -2.39 -0.02 2.43 16 33 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.05 1.76 8.03 -2.39 -0.02 1.74 16 36 H 0.41 10.84 8.43 -92.71 -0.78 10.06 16 37 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.09 1.66 6.95 -2.38 -0.02 1.64 16 39 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 42 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 43 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 44 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.01 0.45 7.95 -2.39 -0.02 0.43 16 Total: -1.00 -74.49 365.67 1.22 -73.27 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.21 Total: 19.70 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 5.54 Total: 6.83 kcal Atomic # 7 Polarization: -123.35 SS G_CDS: -6.51 Total: -129.86 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.05 Total: -18.36 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -74.49 1.22 -73.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028765272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.453 kcal (2) G-P(sol) polarization free energy of solvation -74.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds