Wall clock time and date at job start Tue Mar 31 2020 11:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86809 * 119.99960 * 2 1 4 4 H 1.48497 * 109.47132 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46979 * 300.00121 * 3 2 1 6 6 H 1.48505 * 109.46841 * 59.99814 * 3 2 1 7 7 C 1.38808 * 120.00414 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00550 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99904 * 0.02562 * 7 2 1 10 10 C 1.47016 * 125.64613 * 0.02562 * 9 7 2 11 11 C 1.54326 * 107.27246 * 178.92062 * 10 9 7 12 12 C 1.55161 * 102.93970 * 337.80650 * 11 10 9 13 13 H 1.08999 * 111.00097 * 277.38810 * 12 11 10 14 14 C 1.52994 * 111.00526 * 153.57906 * 12 11 10 15 15 N 1.46497 * 109.47410 * 174.99707 * 14 12 11 16 16 C 1.34773 * 120.00204 * 179.97438 * 15 14 12 17 17 O 1.21279 * 119.99966 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99913 * 180.02562 * 16 15 14 19 19 H 1.09001 * 110.26346 * 60.60345 * 18 16 15 20 20 C 1.54335 * 110.29621 * 182.76248 * 18 16 15 21 21 C 1.54370 * 102.39055 * 92.58011 * 20 18 16 22 22 C 1.51224 * 105.11684 * 26.29012 * 21 20 18 23 23 C 1.38749 * 130.68972 * 162.85081 * 22 21 20 24 24 C 1.38580 * 118.55395 * 180.02562 * 23 22 21 25 25 C 1.38224 * 118.99025 * 0.28535 * 24 23 22 26 26 N 1.31689 * 120.79982 * 359.42534 * 25 24 23 27 27 C 1.32290 * 122.03292 * 0.56437 * 26 25 24 28 28 C 1.47420 * 125.64796 * 179.97438 * 9 7 2 29 29 H 0.97002 * 120.00318 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.88463 * 59.50116 * 10 9 7 31 31 H 1.09000 * 110.01135 * 298.40754 * 10 9 7 32 32 H 1.09002 * 110.71968 * 219.44485 * 11 10 9 33 33 H 1.08997 * 110.87043 * 96.23888 * 11 10 9 34 34 H 1.08999 * 109.47644 * 54.99400 * 14 12 11 35 35 H 1.09000 * 109.46992 * 294.99979 * 14 12 11 36 36 H 0.97004 * 119.99571 * 0.02562 * 15 14 12 37 37 H 1.09000 * 110.82564 * 210.80732 * 20 18 16 38 38 H 1.09001 * 110.82001 * 334.16288 * 20 18 16 39 39 H 1.08996 * 110.31462 * 267.37737 * 21 20 18 40 40 H 1.09007 * 110.31177 * 145.19857 * 21 20 18 41 41 H 1.08001 * 120.72171 * 0.06751 * 23 22 21 42 42 H 1.08002 * 120.50065 * 180.02562 * 24 23 22 43 43 H 1.08003 * 119.59684 * 179.68893 * 25 24 23 44 44 H 1.08997 * 110.36783 * 85.31187 * 28 9 7 45 45 H 1.09007 * 110.36744 * 322.98593 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1374 -2.5328 -0.0005 11 6 -0.4484 -4.0442 -0.0279 12 6 0.8525 -4.6560 -0.6118 13 1 0.8579 -4.5965 -1.7001 14 6 1.0372 -6.1008 -0.1436 15 7 2.2066 -6.6832 -0.8065 16 6 2.5649 -7.9560 -0.5454 17 8 1.9189 -8.6193 0.2379 18 6 3.7682 -8.5549 -1.2269 19 1 4.6655 -7.9900 -0.9739 20 6 3.9324 -10.0346 -0.8204 21 6 3.1584 -10.7719 -1.9341 22 6 3.2151 -9.8494 -3.1309 23 6 2.9796 -10.0967 -4.4757 24 6 3.1055 -9.0490 -5.3739 25 6 3.4657 -7.8010 -4.9013 26 7 3.6762 -7.6014 -3.6167 27 6 3.5657 -8.5751 -2.7280 28 6 1.9335 -3.7311 0.0005 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5569 -2.0520 -0.8843 31 1 -0.5573 -2.0842 0.8998 32 1 -1.2979 -4.2514 -0.6786 33 1 -0.6339 -4.4207 0.9780 34 1 0.1498 -6.6810 -0.3964 35 1 1.1862 -6.1166 0.9361 36 1 2.7235 -6.1525 -1.4327 37 1 4.9836 -10.3229 -0.8231 38 1 3.4839 -10.2204 0.1555 39 1 2.1242 -10.9358 -1.6313 40 1 3.6409 -11.7217 -2.1652 41 1 2.7034 -11.0842 -4.8150 42 1 2.9291 -9.2062 -6.4278 43 1 3.5716 -6.9787 -5.5933 44 1 2.1661 -4.0422 1.0189 45 1 2.8334 -3.7402 -0.6147 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028765273.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:27 Heat of formation + Delta-G solvation = -2.721856 kcal Electronic energy + Delta-G solvation = -25943.753145 eV Core-core repulsion = 22346.319626 eV Total energy + Delta-G solvation = -3597.433519 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.09100 -40.48054 -39.30061 -36.98236 -35.99999 -34.37749 -33.62350 -31.70649 -30.40419 -30.11946 -29.03798 -27.22670 -25.35115 -24.44770 -23.32060 -22.41553 -21.94250 -21.50733 -20.71709 -18.96336 -18.43757 -17.80550 -17.25022 -17.07025 -16.77557 -16.57884 -15.97464 -15.82051 -15.60730 -15.29973 -14.69047 -14.53395 -14.36816 -14.21080 -13.99163 -13.85509 -13.72259 -13.44553 -13.06230 -12.95585 -12.77393 -12.69718 -12.67003 -12.25051 -12.05850 -11.98806 -11.91235 -11.87164 -11.57429 -11.50130 -11.14484 -10.72460 -10.65432 -10.29054 -10.10184 -9.67501 -8.91029 -7.85771 -5.21600 0.08406 0.33131 1.45397 1.46553 1.51525 1.57069 2.14739 2.48895 2.80012 2.98411 3.32385 3.37326 3.58101 3.68106 3.81037 3.83352 3.96944 3.98840 4.02516 4.09252 4.18683 4.31767 4.40721 4.47222 4.58716 4.63567 4.64256 4.67649 4.77501 4.83734 4.88307 4.96413 5.02346 5.04159 5.10315 5.16604 5.24354 5.29894 5.33817 5.44574 5.45632 5.65735 5.76111 5.76411 6.19061 6.47450 7.00168 7.09659 7.14715 7.76754 8.41432 9.24980 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018717 B = 0.002875 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.579948 B = 9735.870103 C =10353.957723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.243 4.243 8 H 0.082 0.918 9 N -0.629 5.629 10 C 0.184 3.816 11 C -0.122 4.122 12 C -0.095 4.095 13 H 0.081 0.919 14 C 0.144 3.856 15 N -0.716 5.716 16 C 0.524 3.476 17 O -0.570 6.570 18 C -0.060 4.060 19 H 0.125 0.875 20 C -0.101 4.101 21 C -0.076 4.076 22 C -0.148 4.148 23 C -0.071 4.071 24 C -0.161 4.161 25 C 0.085 3.915 26 N -0.500 5.500 27 C 0.096 3.904 28 C 0.140 3.860 29 H 0.247 0.753 30 H 0.012 0.988 31 H 0.006 0.994 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.410 0.590 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.106 0.894 41 H 0.161 0.839 42 H 0.169 0.831 43 H 0.176 0.824 44 H 0.021 0.979 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.620 -24.947 -9.887 27.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.372 4.372 8 H 0.100 0.900 9 N -0.355 5.355 10 C 0.059 3.941 11 C -0.160 4.160 12 C -0.115 4.115 13 H 0.099 0.901 14 C 0.020 3.980 15 N -0.367 5.367 16 C 0.310 3.690 17 O -0.449 6.449 18 C -0.082 4.082 19 H 0.143 0.857 20 C -0.139 4.139 21 C -0.113 4.113 22 C -0.150 4.150 23 C -0.097 4.097 24 C -0.180 4.180 25 C -0.072 4.072 26 N -0.209 5.209 27 C -0.041 4.041 28 C 0.015 3.985 29 H 0.056 0.944 30 H 0.030 0.970 31 H 0.024 0.976 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.246 0.754 37 H 0.124 0.876 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.125 0.875 41 H 0.179 0.821 42 H 0.186 0.814 43 H 0.193 0.807 44 H 0.038 0.962 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.354 -24.346 -9.040 26.991 hybrid contribution 0.066 1.092 -0.482 1.195 sum 7.420 -23.254 -9.522 26.200 Atomic orbital electron populations 1.70198 1.06327 1.25195 1.58376 1.25678 0.96659 1.01103 1.02632 0.84991 0.78202 0.79310 0.76716 1.18916 1.21771 1.21967 1.19515 0.91032 0.83753 1.42862 0.89970 1.44813 1.02520 1.01178 1.87002 1.20903 0.83781 0.91688 0.97726 1.22722 0.96901 0.95092 1.01321 1.22382 0.96264 0.92551 1.00279 0.90060 1.21176 0.88107 0.91704 0.96983 1.46064 1.30839 1.13522 1.46231 1.20569 0.85766 0.81367 0.81249 1.90656 1.55391 1.61411 1.37465 1.20846 0.97417 1.00816 0.89147 0.85708 1.22304 1.02563 0.89118 0.99887 1.21006 1.01641 0.98285 0.90383 1.21770 0.99829 0.97067 0.96340 1.21490 0.95996 1.01203 0.91008 1.22482 0.99771 0.93255 1.02539 1.23107 0.95269 0.98033 0.90775 1.66764 1.14691 1.35761 1.03693 1.21420 0.97990 0.90317 0.94365 1.21719 0.95151 0.84521 0.97108 0.94417 0.96971 0.97567 0.89750 0.90793 0.91104 0.91727 0.75373 0.87603 0.89047 0.90469 0.87527 0.82135 0.81355 0.80723 0.96151 0.93880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.43 10.31 21.65 0.22 -58.21 16 2 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 3 Si 0.98 46.54 29.55 68.60 2.03 48.57 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 7 C -0.24 -13.93 10.28 84.03 0.86 -13.06 16 8 H 0.08 4.51 7.83 -2.91 -0.02 4.48 16 9 N -0.63 -33.16 3.39 -692.04 -2.35 -35.50 16 10 C 0.18 9.33 5.37 86.73 0.47 9.79 16 11 C -0.12 -4.49 6.42 31.78 0.20 -4.28 16 12 C -0.10 -3.22 3.05 -9.41 -0.03 -3.25 16 13 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 14 C 0.14 4.23 5.13 86.38 0.44 4.68 16 15 N -0.72 -19.57 5.43 -463.08 -2.51 -22.08 16 16 C 0.52 14.17 7.17 87.66 0.63 14.80 16 17 O -0.57 -18.42 15.45 -3.03 -0.05 -18.47 16 18 C -0.06 -1.25 3.27 -11.58 -0.04 -1.29 16 19 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 20 C -0.10 -1.61 6.40 31.51 0.20 -1.40 16 21 C -0.08 -1.12 6.76 30.48 0.21 -0.91 16 22 C -0.15 -2.63 6.16 -19.59 -0.12 -2.75 16 23 C -0.07 -0.98 10.17 22.47 0.23 -0.75 16 24 C -0.16 -2.10 10.12 22.35 0.23 -1.88 16 25 C 0.09 1.50 11.18 84.71 0.95 2.45 16 26 N -0.50 -11.47 10.35 -182.98 -1.89 -13.36 16 27 C 0.10 2.08 6.52 42.72 0.28 2.36 16 28 C 0.14 5.78 6.65 86.85 0.58 6.36 16 29 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 30 H 0.01 0.68 7.38 -2.39 -0.02 0.66 16 31 H 0.01 0.35 7.50 -2.39 -0.02 0.33 16 32 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.07 2.53 8.04 -2.39 -0.02 2.52 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.06 1.99 7.96 -2.39 -0.02 1.98 16 36 H 0.41 10.90 8.43 -92.71 -0.78 10.11 16 37 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 1.69 6.94 -2.39 -0.02 1.67 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 42 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 43 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 44 H 0.02 0.85 7.91 -2.39 -0.02 0.84 16 45 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -74.37 365.55 1.21 -73.17 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.21 Total: 18.51 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 5.55 Total: 7.38 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -6.53 Total: -129.16 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.05 Total: -18.47 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -74.37 1.21 -73.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028765273.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.444 kcal (2) G-P(sol) polarization free energy of solvation -74.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds