Wall clock time and date at job start Tue Mar 31 2020 11:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99809 * 2 1 4 4 H 1.48498 * 109.47437 * 240.00144 * 3 2 1 5 5 H 1.48503 * 109.47223 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47280 * 119.99856 * 3 2 1 7 7 C 1.38801 * 120.00318 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00791 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99877 * 359.97438 * 7 2 1 10 10 C 1.47013 * 125.64975 * 359.97438 * 9 7 2 11 11 C 1.54328 * 107.27470 * 178.97367 * 10 9 7 12 12 C 1.55154 * 102.93902 * 337.80651 * 11 10 9 13 13 H 1.08994 * 111.00564 * 277.38696 * 12 11 10 14 14 C 1.53000 * 111.00252 * 153.57568 * 12 11 10 15 15 N 1.46503 * 109.47192 * 178.17988 * 14 12 11 16 16 C 1.34776 * 120.00200 * 179.97438 * 15 14 12 17 17 O 1.21289 * 119.99619 * 0.02562 * 16 15 14 18 18 C 1.50692 * 120.00020 * 179.97438 * 16 15 14 19 19 H 1.09004 * 110.34122 * 299.34824 * 18 16 15 20 20 C 1.54339 * 110.29268 * 177.24620 * 18 16 15 21 21 C 1.54367 * 102.38935 * 267.41102 * 20 18 16 22 22 C 1.51221 * 105.12003 * 333.71045 * 21 20 18 23 23 C 1.38744 * 130.69277 * 197.18472 * 22 21 20 24 24 C 1.38583 * 118.55575 * 179.97438 * 23 22 21 25 25 C 1.38225 * 118.98871 * 0.02562 * 24 23 22 26 26 N 1.31689 * 120.80575 * 359.97438 * 25 24 23 27 27 C 1.32300 * 122.03044 * 0.02562 * 26 25 24 28 28 C 1.47476 * 125.62588 * 179.97438 * 9 7 2 29 29 H 0.97001 * 120.00143 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.88219 * 59.55675 * 10 9 7 31 31 H 1.09004 * 109.88447 * 298.39457 * 10 9 7 32 32 H 1.08993 * 110.72074 * 219.44522 * 11 10 9 33 33 H 1.08997 * 110.86806 * 96.23955 * 11 10 9 34 34 H 1.08994 * 109.47304 * 58.17585 * 14 12 11 35 35 H 1.09006 * 109.47023 * 298.17964 * 14 12 11 36 36 H 0.96998 * 120.00041 * 359.97438 * 15 14 12 37 37 H 1.09007 * 110.82520 * 149.19040 * 20 18 16 38 38 H 1.08998 * 110.82645 * 25.63975 * 20 18 16 39 39 H 1.08999 * 110.31583 * 214.79609 * 21 20 18 40 40 H 1.08999 * 110.39670 * 92.66468 * 21 20 18 41 41 H 1.07997 * 120.72119 * 359.94137 * 23 22 21 42 42 H 1.08000 * 120.49848 * 180.27347 * 24 23 22 43 43 H 1.07997 * 119.59370 * 180.02562 * 25 24 23 44 44 H 1.09002 * 110.34515 * 85.25998 * 28 9 7 45 45 H 1.08998 * 110.40513 * 322.91575 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 -0.1374 -2.5328 0.0028 11 6 -0.4483 -4.0442 -0.0227 12 6 0.8516 -4.6565 -0.6079 13 1 0.8555 -4.5981 -1.6963 14 6 1.0370 -6.1009 -0.1385 15 7 2.2486 -6.6594 -0.7440 16 6 2.6149 -7.9275 -0.4718 17 8 1.9413 -8.6065 0.2741 18 6 3.8608 -8.5022 -1.0951 19 1 3.7763 -8.5001 -2.1818 20 6 4.1044 -9.9365 -0.5798 21 6 5.0344 -9.7005 0.6294 22 6 5.7495 -8.4021 0.3297 23 6 6.9023 -7.8572 0.8764 24 6 7.3424 -6.6300 0.4064 25 6 6.6200 -5.9946 -0.5861 26 7 5.5297 -6.5418 -1.0821 27 6 5.0772 -7.7112 -0.6603 28 6 1.9343 -3.7313 0.0017 29 1 -0.4850 0.8400 0.0004 30 1 -0.5581 -2.0528 -0.8808 31 1 -0.5536 -2.0838 0.9047 32 1 -1.2988 -4.2520 -0.6719 33 1 -0.6324 -4.4197 0.9839 34 1 0.1737 -6.6943 -0.4393 35 1 1.1311 -6.1208 0.9473 36 1 2.7870 -6.1165 -1.3408 37 1 4.6012 -10.5416 -1.3383 38 1 3.1691 -10.3992 -0.2649 39 1 5.7523 -10.5157 0.7196 40 1 4.4507 -9.6082 1.5453 41 1 7.4446 -8.3777 1.6519 42 1 8.2384 -6.1790 0.8066 43 1 6.9544 -5.0382 -0.9600 44 1 2.1684 -4.0412 1.0202 45 1 2.8330 -3.7414 -0.6150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028765274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:32 Heat of formation + Delta-G solvation = 18.801551 kcal Electronic energy + Delta-G solvation = -26209.673630 eV Core-core repulsion = 22613.173436 eV Total energy + Delta-G solvation = -3596.500194 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.25684 -39.40342 -37.67888 -36.11435 -34.59352 -32.97845 -32.39006 -29.96511 -29.54601 -28.79992 -27.80761 -25.45930 -23.83475 -23.61471 -22.36934 -21.56086 -20.35846 -19.91066 -19.48883 -17.63290 -16.97030 -16.72290 -16.32340 -16.01364 -15.43658 -15.14780 -14.74312 -14.58534 -14.30005 -13.77716 -13.64384 -13.61877 -13.28342 -13.16095 -12.84025 -12.30935 -12.19208 -12.03311 -11.93268 -11.74283 -11.48864 -11.38718 -11.30741 -10.87832 -10.75986 -10.42406 -10.18407 -10.08345 -9.93941 -9.84960 -9.75772 -9.61995 -9.50040 -8.92546 -8.85788 -8.57130 -6.79977 -5.68279 -3.01601 0.85026 1.07094 2.57419 3.21265 3.41965 3.45899 3.47412 3.59838 3.76496 4.11231 4.51730 4.51889 4.59532 4.72086 4.72548 4.92651 5.01996 5.12111 5.17586 5.27764 5.33359 5.37976 5.47058 5.52802 5.57911 5.59312 5.72007 5.77383 5.85036 5.93925 5.94735 6.01917 6.07643 6.09988 6.38187 6.47209 6.49817 6.55756 6.58316 6.73856 6.95678 7.58332 7.59996 7.66126 7.78417 7.85078 8.24998 8.29187 9.25256 9.85618 10.52163 11.43504 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015178 B = 0.003489 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.301060 B = 8024.172177 C = 9552.162729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.228 4.228 8 H 0.076 0.924 9 N -0.606 5.606 10 C 0.178 3.822 11 C -0.135 4.135 12 C -0.117 4.117 13 H 0.080 0.920 14 C 0.132 3.868 15 N -0.716 5.716 16 C 0.525 3.475 17 O -0.542 6.542 18 C -0.061 4.061 19 H 0.115 0.885 20 C -0.104 4.104 21 C -0.079 4.079 22 C -0.141 4.141 23 C -0.067 4.067 24 C -0.168 4.168 25 C 0.107 3.893 26 N -0.470 5.470 27 C 0.119 3.881 28 C 0.144 3.856 29 H 0.252 0.748 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.408 0.592 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.133 0.867 42 H 0.138 0.862 43 H 0.161 0.839 44 H 0.016 0.984 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.563 -19.920 -1.638 23.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.356 4.356 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.137 4.137 13 H 0.098 0.902 14 C 0.009 3.991 15 N -0.367 5.367 16 C 0.309 3.691 17 O -0.420 6.420 18 C -0.083 4.083 19 H 0.133 0.867 20 C -0.142 4.142 21 C -0.117 4.117 22 C -0.143 4.143 23 C -0.093 4.093 24 C -0.187 4.187 25 C -0.050 4.050 26 N -0.178 5.178 27 C -0.019 4.019 28 C 0.018 3.982 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.243 0.757 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.150 0.850 42 H 0.156 0.844 43 H 0.178 0.822 44 H 0.034 0.966 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.546 -19.683 -1.753 22.399 hybrid contribution 1.319 1.001 0.403 1.704 sum 11.865 -18.682 -1.350 22.173 Atomic orbital electron populations 1.69957 1.04865 1.25079 1.57144 1.24792 0.95714 0.97622 1.02340 0.86204 0.78455 0.83262 0.77869 1.21174 1.21597 1.21224 1.19012 0.90381 0.82479 1.43741 0.90591 1.44487 1.01714 0.99867 1.87171 1.21138 0.84335 0.88133 1.01060 1.22858 0.95431 0.99435 0.99635 1.22607 0.98556 0.92010 1.00539 0.90200 1.21416 0.86127 0.93604 0.97988 1.46078 1.27866 1.13384 1.49343 1.20048 0.85643 0.82012 0.81357 1.90674 1.54763 1.59728 1.36802 1.20777 0.89798 0.95056 1.02681 0.86672 1.22272 1.01424 0.93388 0.97136 1.20993 0.97501 0.93456 0.99712 1.21489 0.96119 0.98854 0.97800 1.21072 0.94682 0.95089 0.98437 1.22131 1.01774 0.95947 0.98898 1.22691 0.89945 0.99173 0.93239 1.66807 1.13371 1.10072 1.27570 1.21328 0.95209 0.91113 0.94211 1.21549 0.94036 0.86044 0.96582 0.93744 0.93549 0.93955 0.91984 0.92277 0.91576 0.91528 0.75682 0.90017 0.87952 0.90160 0.89354 0.84953 0.84389 0.82154 0.96627 0.94490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.45 10.31 55.49 0.57 -26.88 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.23 -6.47 10.28 -15.06 -0.15 -6.62 16 8 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 9 N -0.61 -15.80 3.40 -170.03 -0.58 -16.38 16 10 C 0.18 4.39 5.37 -3.07 -0.02 4.37 16 11 C -0.13 -2.53 6.42 -24.90 -0.16 -2.69 16 12 C -0.12 -2.05 3.07 -88.47 -0.27 -2.32 16 13 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 14 C 0.13 2.03 5.12 -4.04 -0.02 2.01 16 15 N -0.72 -10.17 5.38 -60.29 -0.32 -10.49 16 16 C 0.52 7.33 7.17 -10.99 -0.08 7.25 16 17 O -0.54 -8.95 15.45 5.55 0.09 -8.86 16 18 C -0.06 -0.67 3.27 -91.85 -0.30 -0.97 16 19 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 20 C -0.10 -0.92 6.40 -25.31 -0.16 -1.08 16 21 C -0.08 -0.70 6.76 -26.91 -0.18 -0.88 16 22 C -0.14 -1.50 6.16 -104.20 -0.64 -2.14 16 23 C -0.07 -0.62 10.17 -39.27 -0.40 -1.02 16 24 C -0.17 -1.53 10.12 -39.46 -0.40 -1.93 16 25 C 0.11 1.16 11.18 -17.62 -0.20 0.97 16 26 N -0.47 -6.02 10.35 -9.19 -0.10 -6.11 16 27 C 0.12 1.43 6.51 -82.04 -0.53 0.90 16 28 C 0.14 3.05 6.56 -2.50 -0.02 3.03 16 29 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.05 1.26 7.38 -51.93 -0.38 0.87 16 31 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.05 8.04 -51.93 -0.42 0.64 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.11 8.04 -51.93 -0.42 0.69 16 36 H 0.41 5.62 8.39 -40.82 -0.34 5.27 16 37 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.10 0.99 6.93 -51.93 -0.36 0.63 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 42 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 44 H 0.02 0.35 7.96 -51.93 -0.41 -0.06 16 45 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 365.49 15.07 5.51 5.51 Total: -1.00 -33.54 365.49 -10.40 -43.95 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.92 Total: 3.44 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -3.63 Total: -1.47 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.42 Total: -59.86 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.54 -10.40 -43.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028765274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.748 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds