Wall clock time and date at job start Tue Mar 31 2020 11:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99809 * 2 1 4 4 H 1.48498 * 109.47437 * 240.00144 * 3 2 1 5 5 H 1.48503 * 109.47223 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47280 * 119.99856 * 3 2 1 7 7 C 1.38801 * 120.00318 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00791 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99877 * 359.97438 * 7 2 1 10 10 C 1.47013 * 125.64975 * 359.97438 * 9 7 2 11 11 C 1.54328 * 107.27470 * 178.97367 * 10 9 7 12 12 C 1.55154 * 102.93902 * 337.80651 * 11 10 9 13 13 H 1.08994 * 111.00564 * 277.38696 * 12 11 10 14 14 C 1.53000 * 111.00252 * 153.57568 * 12 11 10 15 15 N 1.46503 * 109.47192 * 178.17988 * 14 12 11 16 16 C 1.34776 * 120.00200 * 179.97438 * 15 14 12 17 17 O 1.21289 * 119.99619 * 0.02562 * 16 15 14 18 18 C 1.50692 * 120.00020 * 179.97438 * 16 15 14 19 19 H 1.09004 * 110.34122 * 299.34824 * 18 16 15 20 20 C 1.54339 * 110.29268 * 177.24620 * 18 16 15 21 21 C 1.54367 * 102.38935 * 267.41102 * 20 18 16 22 22 C 1.51221 * 105.12003 * 333.71045 * 21 20 18 23 23 C 1.38744 * 130.69277 * 197.18472 * 22 21 20 24 24 C 1.38583 * 118.55575 * 179.97438 * 23 22 21 25 25 C 1.38225 * 118.98871 * 0.02562 * 24 23 22 26 26 N 1.31689 * 120.80575 * 359.97438 * 25 24 23 27 27 C 1.32300 * 122.03044 * 0.02562 * 26 25 24 28 28 C 1.47476 * 125.62588 * 179.97438 * 9 7 2 29 29 H 0.97001 * 120.00143 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.88219 * 59.55675 * 10 9 7 31 31 H 1.09004 * 109.88447 * 298.39457 * 10 9 7 32 32 H 1.08993 * 110.72074 * 219.44522 * 11 10 9 33 33 H 1.08997 * 110.86806 * 96.23955 * 11 10 9 34 34 H 1.08994 * 109.47304 * 58.17585 * 14 12 11 35 35 H 1.09006 * 109.47023 * 298.17964 * 14 12 11 36 36 H 0.96998 * 120.00041 * 359.97438 * 15 14 12 37 37 H 1.09007 * 110.82520 * 149.19040 * 20 18 16 38 38 H 1.08998 * 110.82645 * 25.63975 * 20 18 16 39 39 H 1.08999 * 110.31583 * 214.79609 * 21 20 18 40 40 H 1.08999 * 110.39670 * 92.66468 * 21 20 18 41 41 H 1.07997 * 120.72119 * 359.94137 * 23 22 21 42 42 H 1.08000 * 120.49848 * 180.27347 * 24 23 22 43 43 H 1.07997 * 119.59370 * 180.02562 * 25 24 23 44 44 H 1.09002 * 110.34515 * 85.25998 * 28 9 7 45 45 H 1.08998 * 110.40513 * 322.91575 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 -0.1374 -2.5328 0.0028 11 6 -0.4483 -4.0442 -0.0227 12 6 0.8516 -4.6565 -0.6079 13 1 0.8555 -4.5981 -1.6963 14 6 1.0370 -6.1009 -0.1385 15 7 2.2486 -6.6594 -0.7440 16 6 2.6149 -7.9275 -0.4718 17 8 1.9413 -8.6065 0.2741 18 6 3.8608 -8.5022 -1.0951 19 1 3.7763 -8.5001 -2.1818 20 6 4.1044 -9.9365 -0.5798 21 6 5.0344 -9.7005 0.6294 22 6 5.7495 -8.4021 0.3297 23 6 6.9023 -7.8572 0.8764 24 6 7.3424 -6.6300 0.4064 25 6 6.6200 -5.9946 -0.5861 26 7 5.5297 -6.5418 -1.0821 27 6 5.0772 -7.7112 -0.6603 28 6 1.9343 -3.7313 0.0017 29 1 -0.4850 0.8400 0.0004 30 1 -0.5581 -2.0528 -0.8808 31 1 -0.5536 -2.0838 0.9047 32 1 -1.2988 -4.2520 -0.6719 33 1 -0.6324 -4.4197 0.9839 34 1 0.1737 -6.6943 -0.4393 35 1 1.1311 -6.1208 0.9473 36 1 2.7870 -6.1165 -1.3408 37 1 4.6012 -10.5416 -1.3383 38 1 3.1691 -10.3992 -0.2649 39 1 5.7523 -10.5157 0.7196 40 1 4.4507 -9.6082 1.5453 41 1 7.4446 -8.3777 1.6519 42 1 8.2384 -6.1790 0.8066 43 1 6.9544 -5.0382 -0.9600 44 1 2.1684 -4.0412 1.0202 45 1 2.8330 -3.7414 -0.6150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028765274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:31 Heat of formation + Delta-G solvation = -2.538422 kcal Electronic energy + Delta-G solvation = -26210.599001 eV Core-core repulsion = 22613.173436 eV Total energy + Delta-G solvation = -3597.425565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.08932 -40.47864 -39.30154 -36.98099 -35.99729 -34.37635 -33.62783 -31.70954 -30.40571 -30.11695 -29.03306 -27.24022 -25.35303 -24.45220 -23.33332 -22.42284 -21.93985 -21.48055 -20.72234 -18.96804 -18.43770 -17.76374 -17.36761 -17.06380 -16.72950 -16.37811 -16.26229 -15.75482 -15.57461 -15.32140 -14.71083 -14.52096 -14.38433 -14.18742 -14.01079 -13.87024 -13.72560 -13.40986 -13.07921 -12.93906 -12.79461 -12.69176 -12.62235 -12.23827 -12.07550 -12.06418 -11.92152 -11.86870 -11.57444 -11.49867 -11.14454 -10.71125 -10.65602 -10.29942 -10.10006 -9.67758 -8.92038 -7.85882 -5.22060 0.07994 0.32401 1.44604 1.48339 1.51604 1.54685 2.15384 2.48776 2.80060 2.97573 3.31824 3.37516 3.57240 3.68634 3.80371 3.85185 3.97062 3.98858 4.01547 4.08251 4.18443 4.31248 4.40873 4.46673 4.58555 4.63304 4.65166 4.67535 4.74635 4.83532 4.87081 4.96087 5.02143 5.04935 5.10341 5.16666 5.23921 5.29545 5.33523 5.42894 5.44992 5.65654 5.75541 5.75714 6.18556 6.47759 6.99350 7.09172 7.14990 7.76139 8.40955 9.24414 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015178 B = 0.003489 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.301060 B = 8024.172177 C = 9552.162729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.065 4.065 3 Si 0.980 3.020 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.247 4.247 8 H 0.080 0.920 9 N -0.628 5.628 10 C 0.184 3.816 11 C -0.121 4.121 12 C -0.096 4.096 13 H 0.088 0.912 14 C 0.144 3.856 15 N -0.716 5.716 16 C 0.524 3.476 17 O -0.569 6.569 18 C -0.058 4.058 19 H 0.130 0.870 20 C -0.099 4.099 21 C -0.077 4.077 22 C -0.150 4.150 23 C -0.072 4.072 24 C -0.163 4.163 25 C 0.084 3.916 26 N -0.497 5.497 27 C 0.096 3.904 28 C 0.144 3.856 29 H 0.247 0.753 30 H 0.014 0.986 31 H 0.005 0.995 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.410 0.590 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.160 0.840 42 H 0.167 0.833 43 H 0.172 0.828 44 H 0.010 0.990 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.352 -21.499 -1.829 25.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.807 3.193 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.098 0.902 9 N -0.354 5.354 10 C 0.059 3.941 11 C -0.160 4.160 12 C -0.116 4.116 13 H 0.106 0.894 14 C 0.020 3.980 15 N -0.367 5.367 16 C 0.310 3.690 17 O -0.449 6.449 18 C -0.080 4.080 19 H 0.148 0.852 20 C -0.137 4.137 21 C -0.114 4.114 22 C -0.152 4.152 23 C -0.098 4.098 24 C -0.182 4.182 25 C -0.073 4.073 26 N -0.206 5.206 27 C -0.042 4.042 28 C 0.019 3.981 29 H 0.056 0.944 30 H 0.033 0.967 31 H 0.023 0.977 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.246 0.754 37 H 0.127 0.873 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.093 0.907 41 H 0.178 0.822 42 H 0.184 0.816 43 H 0.189 0.811 44 H 0.028 0.972 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.362 -21.293 -1.953 24.699 hybrid contribution 0.824 1.499 0.497 1.781 sum 13.186 -19.794 -1.455 23.829 Atomic orbital electron populations 1.70187 1.06317 1.25386 1.58119 1.25669 0.96645 1.01065 1.02451 0.85139 0.77171 0.78661 0.78287 1.20046 1.21919 1.20372 1.19421 0.90958 0.83820 1.43347 0.90189 1.44814 1.02550 1.01067 1.87019 1.20920 0.83669 0.91780 0.97738 1.22725 0.97011 0.95004 1.01275 1.22417 0.96074 0.92465 1.00625 0.89402 1.21186 0.87347 0.92192 0.97271 1.46065 1.27532 1.13754 1.49330 1.20580 0.86198 0.81450 0.80746 1.90659 1.55908 1.60308 1.38043 1.20842 0.87918 0.95873 1.03366 0.85189 1.22313 1.01285 0.92278 0.97830 1.21016 0.97747 0.93638 0.99006 1.21798 0.96544 0.99402 0.97436 1.21476 0.94386 0.95195 0.98707 1.22466 1.02194 0.95741 0.97837 1.23057 0.90082 0.99983 0.94141 1.66760 1.14422 1.10798 1.28637 1.21500 0.95927 0.91439 0.95328 1.21647 0.95194 0.84725 0.96544 0.94363 0.96744 0.97690 0.89306 0.91068 0.90128 0.92688 0.75384 0.87343 0.88887 0.87502 0.90682 0.82203 0.81591 0.81086 0.97189 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.32 10.31 21.65 0.22 -58.10 16 2 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 3 Si 0.98 46.38 29.55 68.60 2.03 48.41 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.25 -14.22 10.28 84.03 0.86 -13.36 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 9 N -0.63 -33.36 3.40 -691.84 -2.35 -35.71 16 10 C 0.18 9.32 5.37 86.73 0.47 9.79 16 11 C -0.12 -4.46 6.42 31.78 0.20 -4.26 16 12 C -0.10 -3.25 3.07 -9.40 -0.03 -3.28 16 13 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 14 C 0.14 4.22 5.12 86.38 0.44 4.66 16 15 N -0.72 -19.58 5.38 -463.06 -2.49 -22.07 16 16 C 0.52 14.11 7.17 87.65 0.63 14.73 16 17 O -0.57 -18.35 15.45 -3.06 -0.05 -18.39 16 18 C -0.06 -1.19 3.27 -11.59 -0.04 -1.23 16 19 H 0.13 2.20 8.14 -2.38 -0.02 2.18 16 20 C -0.10 -1.56 6.40 31.51 0.20 -1.36 16 21 C -0.08 -1.20 6.76 30.48 0.21 -1.00 16 22 C -0.15 -2.92 6.16 -19.59 -0.12 -3.04 16 23 C -0.07 -1.17 10.17 22.47 0.23 -0.94 16 24 C -0.16 -2.64 10.12 22.35 0.23 -2.41 16 25 C 0.08 1.75 11.18 84.71 0.95 2.70 16 26 N -0.50 -12.38 10.35 -182.98 -1.89 -14.27 16 27 C 0.10 2.18 6.51 42.72 0.28 2.46 16 28 C 0.14 6.08 6.56 86.85 0.57 6.65 16 29 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 30 H 0.01 0.81 7.38 -2.38 -0.02 0.79 16 31 H 0.00 0.28 7.51 -2.38 -0.02 0.26 16 32 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.07 2.46 8.04 -2.39 -0.02 2.44 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.05 1.77 8.04 -2.38 -0.02 1.75 16 36 H 0.41 10.93 8.39 -92.71 -0.78 10.15 16 37 H 0.11 1.11 8.14 -2.38 -0.02 1.10 16 38 H 0.09 1.67 6.93 -2.39 -0.02 1.66 16 39 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 42 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 43 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 44 H 0.01 0.45 7.96 -2.39 -0.02 0.43 16 45 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -74.42 365.49 1.22 -73.19 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.21 Total: 20.14 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 5.54 Total: 6.80 kcal Atomic # 7 Polarization: -123.64 SS G_CDS: -6.51 Total: -130.15 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.05 Total: -18.39 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -74.42 1.22 -73.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028765274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.656 kcal (2) G-P(sol) polarization free energy of solvation -74.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds