Wall clock time and date at job start Tue Mar 31 2020 11:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00034 * 2 1 4 4 H 1.48505 * 109.47239 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47457 * 300.00300 * 3 2 1 6 6 H 1.48506 * 109.47031 * 60.00460 * 3 2 1 7 7 C 1.38820 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00101 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99749 * 0.02562 * 7 2 1 10 10 C 1.47580 * 134.49365 * 180.02562 * 9 7 2 11 11 C 1.53947 * 86.11669 * 155.35195 * 10 9 7 12 12 C 1.53002 * 113.73772 * 137.95228 * 11 10 9 13 13 N 1.46503 * 109.46787 * 174.99881 * 12 11 10 14 14 C 1.34786 * 119.99691 * 180.02562 * 13 12 11 15 15 O 1.21280 * 120.00020 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00024 * 180.02562 * 14 13 12 17 17 H 1.09005 * 109.24857 * 299.47569 * 16 14 13 18 18 C 1.52712 * 109.25606 * 179.97438 * 16 14 13 19 19 C 1.53328 * 108.61996 * 188.38353 * 18 16 14 20 20 C 1.53159 * 108.14852 * 69.72689 * 19 18 16 21 21 C 1.50502 * 110.67821 * 309.34629 * 20 19 18 22 22 C 1.39187 * 117.96416 * 197.29578 * 21 20 19 23 23 C 1.38411 * 118.86124 * 180.29821 * 22 21 20 24 24 C 1.38237 * 118.84735 * 0.02562 * 23 22 21 25 25 N 1.31509 * 120.60614 * 359.88130 * 24 23 22 26 26 C 1.32704 * 122.40635 * 0.02562 * 25 24 23 27 27 C 1.47579 * 134.49379 * 359.97438 * 9 7 2 28 28 H 0.96998 * 120.00443 * 0.02562 * 1 2 3 29 29 H 1.09003 * 113.76872 * 41.05354 * 10 9 7 30 30 H 1.08998 * 113.86877 * 269.67038 * 10 9 7 31 31 H 1.08997 * 113.74493 * 269.15066 * 11 10 9 32 32 H 1.09000 * 109.46813 * 55.00424 * 12 11 10 33 33 H 1.08999 * 109.47346 * 294.99877 * 12 11 10 34 34 H 0.96998 * 120.00640 * 0.02562 * 13 12 11 35 35 H 1.09002 * 109.64139 * 308.17733 * 18 16 14 36 36 H 1.09002 * 109.64166 * 68.59370 * 18 16 14 37 37 H 1.08998 * 109.69155 * 189.69462 * 19 18 16 38 38 H 1.08999 * 109.68833 * 310.27055 * 19 18 16 39 39 H 1.09000 * 109.23398 * 189.01393 * 20 19 18 40 40 H 1.08993 * 109.15654 * 69.63802 * 20 19 18 41 41 H 1.07998 * 120.57155 * 0.27930 * 22 21 20 42 42 H 1.08005 * 120.57760 * 180.02562 * 23 22 21 43 43 H 1.07991 * 119.69586 * 179.88831 * 24 23 22 44 44 H 1.09007 * 113.76817 * 90.34720 * 27 9 7 45 45 H 1.09004 * 113.77318 * 318.95207 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0019 11 6 0.3466 -4.0832 0.6374 12 6 -0.3636 -5.3137 0.0694 13 7 -1.5979 -5.5552 0.8206 14 6 -2.3924 -6.5943 0.4953 15 8 -2.0856 -7.3289 -0.4196 16 6 -3.6624 -6.8425 1.2676 17 1 -3.4171 -7.0220 2.3144 18 6 -4.3669 -8.0713 0.6969 19 6 -5.7507 -8.1882 1.3468 20 6 -6.6215 -7.0417 0.8244 21 6 -5.9084 -5.7242 0.9690 22 6 -6.6671 -4.5597 0.8942 23 6 -6.0293 -3.3376 1.0184 24 6 -4.6607 -3.3162 1.2119 25 7 -3.9764 -4.4372 1.2793 26 6 -4.5501 -5.6285 1.1669 27 6 -0.1032 -2.7574 -0.0019 28 1 -0.4851 0.8400 -0.0004 29 1 2.5620 -4.0327 0.6538 30 1 1.8333 -4.2363 -0.9988 31 1 0.3583 -4.0647 1.7272 32 1 0.2897 -6.1820 0.1551 33 1 -0.6044 -5.1422 -0.9797 34 1 -1.8435 -4.9674 1.5522 35 1 -4.4769 -7.9624 -0.3821 36 1 -3.7820 -8.9643 0.9172 37 1 -6.1996 -9.1463 1.0851 38 1 -5.6555 -8.1102 2.4299 39 1 -7.5522 -7.0107 1.3910 40 1 -6.8473 -7.2148 -0.2277 41 1 -7.7351 -4.6088 0.7415 42 1 -6.5911 -2.4167 0.9651 43 1 -4.1488 -2.3702 1.3088 44 1 -0.5271 -2.8724 -0.9996 45 1 -0.7169 -2.1396 0.6537 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031919392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:15 Heat of formation + Delta-G solvation = 43.390666 kcal Electronic energy + Delta-G solvation = -26305.171853 eV Core-core repulsion = 22709.737923 eV Total energy + Delta-G solvation = -3595.433930 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.06096 -39.20073 -37.92453 -36.48571 -34.21890 -33.46285 -32.07404 -30.61754 -30.21491 -28.59858 -25.96904 -24.72466 -24.53850 -23.39445 -23.11123 -21.73630 -20.48511 -19.82643 -18.88386 -17.14244 -16.78188 -16.59267 -16.51806 -15.75606 -15.56588 -15.04428 -14.69169 -14.41258 -14.11730 -14.00145 -13.79821 -13.63394 -13.17483 -13.01387 -12.98737 -12.70554 -12.41249 -12.20843 -12.01782 -11.40733 -11.31340 -11.25503 -11.12190 -10.95225 -10.77982 -10.67666 -10.48124 -9.99704 -9.82059 -9.65840 -9.61731 -9.42599 -9.31931 -8.82911 -8.75528 -8.53814 -6.81857 -5.72577 -3.04139 0.98117 1.15175 2.86726 3.40568 3.45883 3.48313 3.48977 3.74490 4.06748 4.33163 4.49132 4.55344 4.62184 4.70476 4.83104 4.96611 5.07958 5.16412 5.20493 5.26586 5.30774 5.43331 5.45097 5.48935 5.55066 5.59655 5.65136 5.74237 5.78166 5.90454 5.97919 6.07507 6.12409 6.14473 6.18739 6.34969 6.46103 6.59684 6.68163 6.77455 6.94881 7.30920 7.44750 7.63138 7.90269 7.96389 8.03294 8.58799 9.09508 9.75273 10.66059 11.44503 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017819 B = 0.003377 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.968054 B = 8289.759345 C = 9685.489953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.220 4.220 8 H 0.079 0.921 9 N -0.613 5.613 10 C 0.127 3.873 11 C -0.150 4.150 12 C 0.130 3.870 13 N -0.702 5.702 14 C 0.522 3.478 15 O -0.554 6.554 16 C -0.056 4.056 17 H 0.111 0.889 18 C -0.100 4.100 19 C -0.120 4.120 20 C -0.077 4.077 21 C -0.124 4.124 22 C -0.078 4.078 23 C -0.172 4.172 24 C 0.116 3.884 25 N -0.480 5.480 26 C 0.135 3.865 27 C 0.173 3.827 28 H 0.251 0.749 29 H 0.044 0.956 30 H 0.035 0.965 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.412 0.588 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.164 0.836 44 H 0.024 0.976 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.375 -14.516 5.422 22.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.206 4.206 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.348 4.348 8 H 0.097 0.903 9 N -0.339 5.339 10 C 0.000 4.000 11 C -0.170 4.170 12 C 0.005 3.995 13 N -0.353 5.353 14 C 0.307 3.693 15 O -0.433 6.433 16 C -0.077 4.077 17 H 0.129 0.871 18 C -0.138 4.138 19 C -0.158 4.158 20 C -0.115 4.115 21 C -0.125 4.125 22 C -0.105 4.105 23 C -0.192 4.192 24 C -0.044 4.044 25 N -0.188 5.188 26 C -0.001 4.001 27 C 0.048 3.952 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.250 0.750 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.181 0.819 44 H 0.042 0.958 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.174 -14.609 4.906 21.628 hybrid contribution -0.613 1.510 0.012 1.629 sum -15.787 -13.100 4.918 21.095 Atomic orbital electron populations 1.69834 1.04950 1.25000 1.57009 1.24766 0.95678 0.97416 1.02697 0.86068 0.78772 0.83861 0.77203 1.20510 1.21831 1.21749 1.19083 0.90300 0.82074 1.43327 0.90292 1.45961 1.02642 0.99260 1.86067 1.22505 0.94160 0.86490 0.96831 1.23739 0.97878 0.94931 1.00421 1.21409 0.84574 0.97567 0.95912 1.46136 1.22894 1.29529 1.36789 1.20084 0.84352 0.80924 0.83988 1.90669 1.74070 1.47871 1.30712 1.20186 0.92687 0.92926 1.01938 0.87096 1.21397 0.95097 0.95918 1.01399 1.21672 0.95353 0.98144 1.00618 1.20500 0.98013 0.90863 1.02123 1.20353 0.93986 0.96363 1.01839 1.21562 1.00243 0.91877 0.96774 1.22171 0.96505 0.98749 1.01754 1.22824 0.91310 0.96626 0.93595 1.67370 1.40611 0.98030 1.12828 1.20565 0.90647 0.92411 0.96478 1.22251 0.87828 0.88542 0.96572 0.93848 0.93780 0.94764 0.89339 0.92239 0.91847 0.75035 0.90356 0.90246 0.90647 0.91426 0.90584 0.90291 0.84985 0.84624 0.81860 0.95806 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.35 11.38 55.49 0.63 -26.72 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.22 -6.30 10.70 -15.06 -0.16 -6.46 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.61 -16.11 3.70 -177.93 -0.66 -16.77 16 10 C 0.13 2.66 8.50 -2.98 -0.03 2.64 16 11 C -0.15 -2.85 3.94 -89.71 -0.35 -3.21 16 12 C 0.13 2.22 5.53 -4.04 -0.02 2.20 16 13 N -0.70 -11.03 4.96 -60.29 -0.30 -11.33 16 14 C 0.52 8.15 7.06 -10.98 -0.08 8.07 16 15 O -0.55 -10.34 15.83 5.56 0.09 -10.25 16 16 C -0.06 -0.66 2.71 -93.06 -0.25 -0.91 16 17 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 18 C -0.10 -1.01 4.63 -26.71 -0.12 -1.13 16 19 C -0.12 -0.87 6.03 -26.48 -0.16 -1.03 16 20 C -0.08 -0.59 5.69 -27.90 -0.16 -0.74 16 21 C -0.12 -1.28 5.74 -104.60 -0.60 -1.88 16 22 C -0.08 -0.74 9.75 -39.17 -0.38 -1.12 16 23 C -0.17 -1.74 10.12 -39.52 -0.40 -2.14 16 24 C 0.12 1.44 11.19 -17.69 -0.20 1.24 16 25 N -0.48 -6.61 7.54 -9.51 -0.07 -6.69 16 26 C 0.13 1.67 6.20 -82.44 -0.51 1.16 16 27 C 0.17 4.14 7.07 -3.00 -0.02 4.12 16 28 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.20 7.84 -51.93 -0.41 0.79 16 34 H 0.41 6.20 6.80 -40.82 -0.28 5.92 16 35 H 0.08 0.92 7.78 -51.93 -0.40 0.52 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 39 H 0.08 0.44 8.13 -51.93 -0.42 0.02 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.14 1.05 8.06 -52.48 -0.42 0.62 16 43 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 44 H 0.02 0.60 7.89 -51.93 -0.41 0.19 16 45 H 0.07 1.89 7.15 -51.93 -0.37 1.51 16 LS Contribution 363.74 15.07 5.48 5.48 Total: -1.00 -34.05 363.74 -10.30 -44.35 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.91 Total: 4.13 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -3.54 Total: 0.45 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -0.40 Total: -61.50 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.05 -10.30 -44.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031919392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.741 kcal (2) G-P(sol) polarization free energy of solvation -34.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds