Wall clock time and date at job start Tue Mar 31 2020 11:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00034 * 2 1 4 4 H 1.48505 * 109.47239 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47457 * 300.00300 * 3 2 1 6 6 H 1.48506 * 109.47031 * 60.00460 * 3 2 1 7 7 C 1.38820 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00101 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99749 * 0.02562 * 7 2 1 10 10 C 1.47580 * 134.49365 * 180.02562 * 9 7 2 11 11 C 1.53947 * 86.11669 * 155.35195 * 10 9 7 12 12 C 1.53002 * 113.73772 * 137.95228 * 11 10 9 13 13 N 1.46503 * 109.46787 * 174.99881 * 12 11 10 14 14 C 1.34786 * 119.99691 * 180.02562 * 13 12 11 15 15 O 1.21280 * 120.00020 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00024 * 180.02562 * 14 13 12 17 17 H 1.09005 * 109.24857 * 299.47569 * 16 14 13 18 18 C 1.52712 * 109.25606 * 179.97438 * 16 14 13 19 19 C 1.53328 * 108.61996 * 188.38353 * 18 16 14 20 20 C 1.53159 * 108.14852 * 69.72689 * 19 18 16 21 21 C 1.50502 * 110.67821 * 309.34629 * 20 19 18 22 22 C 1.39187 * 117.96416 * 197.29578 * 21 20 19 23 23 C 1.38411 * 118.86124 * 180.29821 * 22 21 20 24 24 C 1.38237 * 118.84735 * 0.02562 * 23 22 21 25 25 N 1.31509 * 120.60614 * 359.88130 * 24 23 22 26 26 C 1.32704 * 122.40635 * 0.02562 * 25 24 23 27 27 C 1.47579 * 134.49379 * 359.97438 * 9 7 2 28 28 H 0.96998 * 120.00443 * 0.02562 * 1 2 3 29 29 H 1.09003 * 113.76872 * 41.05354 * 10 9 7 30 30 H 1.08998 * 113.86877 * 269.67038 * 10 9 7 31 31 H 1.08997 * 113.74493 * 269.15066 * 11 10 9 32 32 H 1.09000 * 109.46813 * 55.00424 * 12 11 10 33 33 H 1.08999 * 109.47346 * 294.99877 * 12 11 10 34 34 H 0.96998 * 120.00640 * 0.02562 * 13 12 11 35 35 H 1.09002 * 109.64139 * 308.17733 * 18 16 14 36 36 H 1.09002 * 109.64166 * 68.59370 * 18 16 14 37 37 H 1.08998 * 109.69155 * 189.69462 * 19 18 16 38 38 H 1.08999 * 109.68833 * 310.27055 * 19 18 16 39 39 H 1.09000 * 109.23398 * 189.01393 * 20 19 18 40 40 H 1.08993 * 109.15654 * 69.63802 * 20 19 18 41 41 H 1.07998 * 120.57155 * 0.27930 * 22 21 20 42 42 H 1.08005 * 120.57760 * 180.02562 * 23 22 21 43 43 H 1.07991 * 119.69586 * 179.88831 * 24 23 22 44 44 H 1.09007 * 113.76817 * 90.34720 * 27 9 7 45 45 H 1.09004 * 113.77318 * 318.95207 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0019 11 6 0.3466 -4.0832 0.6374 12 6 -0.3636 -5.3137 0.0694 13 7 -1.5979 -5.5552 0.8206 14 6 -2.3924 -6.5943 0.4953 15 8 -2.0856 -7.3289 -0.4196 16 6 -3.6624 -6.8425 1.2676 17 1 -3.4171 -7.0220 2.3144 18 6 -4.3669 -8.0713 0.6969 19 6 -5.7507 -8.1882 1.3468 20 6 -6.6215 -7.0417 0.8244 21 6 -5.9084 -5.7242 0.9690 22 6 -6.6671 -4.5597 0.8942 23 6 -6.0293 -3.3376 1.0184 24 6 -4.6607 -3.3162 1.2119 25 7 -3.9764 -4.4372 1.2793 26 6 -4.5501 -5.6285 1.1669 27 6 -0.1032 -2.7574 -0.0019 28 1 -0.4851 0.8400 -0.0004 29 1 2.5620 -4.0327 0.6538 30 1 1.8333 -4.2363 -0.9988 31 1 0.3583 -4.0647 1.7272 32 1 0.2897 -6.1820 0.1551 33 1 -0.6044 -5.1422 -0.9797 34 1 -1.8435 -4.9674 1.5522 35 1 -4.4769 -7.9624 -0.3821 36 1 -3.7820 -8.9643 0.9172 37 1 -6.1996 -9.1463 1.0851 38 1 -5.6555 -8.1102 2.4299 39 1 -7.5522 -7.0107 1.3910 40 1 -6.8473 -7.2148 -0.2277 41 1 -7.7351 -4.6088 0.7415 42 1 -6.5911 -2.4167 0.9651 43 1 -4.1488 -2.3702 1.3088 44 1 -0.5271 -2.8724 -0.9996 45 1 -0.7169 -2.1396 0.6537 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031919392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:14 Heat of formation + Delta-G solvation = 22.251290 kcal Electronic energy + Delta-G solvation = -26306.088525 eV Core-core repulsion = 22709.737923 eV Total energy + Delta-G solvation = -3596.350602 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.97039 -40.47077 -39.61143 -37.30826 -35.66223 -34.46811 -34.00049 -31.43254 -31.15680 -30.27150 -27.65426 -26.55187 -25.51273 -24.26580 -24.17022 -23.31485 -21.63307 -20.83553 -20.41075 -18.76043 -18.19433 -17.64613 -17.51396 -16.97164 -16.94422 -16.52283 -16.03616 -15.66092 -15.44992 -15.06674 -14.99263 -14.66160 -14.50814 -14.33302 -14.02705 -13.81290 -13.54550 -13.36530 -13.23657 -13.11095 -12.89715 -12.83543 -12.52949 -12.24000 -12.07264 -11.82289 -11.80774 -11.58384 -11.47671 -11.27145 -10.96128 -10.86709 -10.55713 -10.31909 -9.91005 -9.68445 -8.92259 -7.89972 -5.24002 0.13894 0.34946 1.44760 1.46117 1.56317 1.64660 2.31406 2.47192 2.83569 3.19145 3.30183 3.39747 3.52674 3.72736 3.84477 3.88345 3.93383 4.08912 4.11940 4.18804 4.28686 4.36090 4.41376 4.43659 4.58740 4.60906 4.70163 4.75386 4.83866 4.85505 4.87994 4.92889 5.01064 5.09200 5.14308 5.23064 5.26100 5.30266 5.39682 5.44371 5.51696 5.57230 5.65550 5.79715 5.93837 6.68759 6.92280 7.01816 7.33390 7.60409 8.56940 9.26881 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017819 B = 0.003377 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.968054 B = 8289.759345 C = 9685.489953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.067 4.067 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.289 1.289 7 C -0.238 4.238 8 H 0.084 0.916 9 N -0.643 5.643 10 C 0.126 3.874 11 C -0.114 4.114 12 C 0.141 3.859 13 N -0.700 5.700 14 C 0.518 3.482 15 O -0.588 6.588 16 C -0.049 4.049 17 H 0.130 0.870 18 C -0.097 4.097 19 C -0.113 4.113 20 C -0.077 4.077 21 C -0.122 4.122 22 C -0.078 4.078 23 C -0.168 4.168 24 C 0.086 3.914 25 N -0.509 5.509 26 C 0.109 3.891 27 C 0.174 3.826 28 H 0.248 0.752 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.415 0.585 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.168 0.832 42 H 0.159 0.841 43 H 0.153 0.847 44 H 0.003 0.997 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.663 -15.748 6.340 24.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.216 1.216 7 C -0.366 4.366 8 H 0.101 0.899 9 N -0.370 5.370 10 C 0.001 3.999 11 C -0.134 4.134 12 C 0.016 3.984 13 N -0.352 5.352 14 C 0.304 3.696 15 O -0.469 6.469 16 C -0.070 4.070 17 H 0.147 0.853 18 C -0.136 4.136 19 C -0.150 4.150 20 C -0.115 4.115 21 C -0.124 4.124 22 C -0.103 4.103 23 C -0.187 4.187 24 C -0.073 4.073 25 N -0.218 5.218 26 C -0.026 4.026 27 C 0.048 3.952 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.254 0.746 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.121 0.879 40 H 0.102 0.898 41 H 0.185 0.815 42 H 0.177 0.823 43 H 0.170 0.830 44 H 0.021 0.979 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.453 -15.867 5.840 23.591 hybrid contribution -0.226 1.876 -0.312 1.915 sum -16.678 -13.990 5.529 22.460 Atomic orbital electron populations 1.70025 1.06395 1.25467 1.58088 1.25644 0.96624 1.00842 1.02918 0.84997 0.78175 0.79317 0.76741 1.19013 1.22088 1.21567 1.19489 0.90879 0.83416 1.42804 0.89860 1.46363 1.03726 1.00697 1.86201 1.22692 0.95665 0.83655 0.97880 1.23364 0.96328 0.93143 1.00552 1.21153 0.85444 0.97005 0.94765 1.46138 1.22557 1.29852 1.36661 1.20789 0.85143 0.79943 0.83676 1.90644 1.75052 1.48964 1.32289 1.20236 0.90717 0.93750 1.02334 0.85279 1.21402 0.96968 0.94982 1.00212 1.21669 0.93288 0.99165 1.00870 1.20611 0.98701 0.89207 1.02933 1.20738 0.93294 0.98286 1.00108 1.21987 1.01875 0.90983 0.95486 1.22419 0.95497 1.00391 1.00415 1.22864 0.92753 0.96151 0.95538 1.67239 1.41860 0.98873 1.13856 1.20739 0.91871 0.91893 0.98093 1.22099 0.86854 0.90875 0.95323 0.94286 0.91801 0.93722 0.88191 0.90637 0.93880 0.74620 0.92516 0.89950 0.88454 0.90445 0.87872 0.89797 0.81491 0.82343 0.82951 0.97910 0.93756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.27 11.38 21.65 0.25 -58.02 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 3 Si 0.98 46.53 29.55 68.60 2.03 48.55 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 7 C -0.24 -13.75 10.70 84.04 0.90 -12.85 16 8 H 0.08 4.60 7.83 -2.91 -0.02 4.58 16 9 N -0.64 -34.35 3.70 -716.84 -2.65 -37.00 16 10 C 0.13 5.24 8.50 86.48 0.74 5.98 16 11 C -0.11 -4.37 3.94 -10.15 -0.04 -4.41 16 12 C 0.14 4.87 5.53 86.38 0.48 5.35 16 13 N -0.70 -22.34 4.96 -463.04 -2.29 -24.63 16 14 C 0.52 16.30 7.06 87.65 0.62 16.92 16 15 O -0.59 -22.23 15.83 -3.03 -0.05 -22.28 16 16 C -0.05 -1.13 2.71 -12.37 -0.03 -1.16 16 17 H 0.13 2.44 8.14 -2.38 -0.02 2.42 16 18 C -0.10 -1.83 4.63 30.61 0.14 -1.69 16 19 C -0.11 -1.29 6.03 30.76 0.19 -1.10 16 20 C -0.08 -0.91 5.69 29.84 0.17 -0.74 16 21 C -0.12 -2.29 5.74 -19.85 -0.11 -2.40 16 22 C -0.08 -1.26 9.75 22.54 0.22 -1.04 16 23 C -0.17 -3.23 10.12 22.31 0.23 -3.00 16 24 C 0.09 2.23 11.19 84.74 0.95 3.18 16 25 N -0.51 -14.46 7.54 -184.01 -1.39 -15.85 16 26 C 0.11 2.67 6.20 42.28 0.26 2.93 16 27 C 0.17 8.66 7.07 86.47 0.61 9.27 16 28 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 29 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 31 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 32 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.04 1.67 7.84 -2.39 -0.02 1.65 16 34 H 0.41 12.79 6.80 -92.71 -0.63 12.16 16 35 H 0.06 1.31 7.78 -2.39 -0.02 1.29 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.08 0.77 8.10 -2.39 -0.02 0.75 16 39 H 0.10 0.72 8.13 -2.39 -0.02 0.70 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 43 H 0.15 4.05 8.06 -2.92 -0.02 4.02 16 44 H 0.00 0.17 7.89 -2.38 -0.02 0.15 16 45 H 0.04 2.43 7.15 -2.38 -0.02 2.42 16 Total: -1.00 -75.77 363.74 2.03 -73.74 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.36 Total: 23.73 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 5.77 Total: 11.75 kcal Atomic # 7 Polarization: -129.41 SS G_CDS: -6.09 Total: -135.49 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.05 Total: -22.28 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Total: -75.77 2.03 -73.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031919392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.996 kcal (2) G-P(sol) polarization free energy of solvation -75.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds