Wall clock time and date at job start Tue Mar 31 2020 11:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48495 * 109.47363 * 240.00008 * 3 2 1 5 5 H 1.48506 * 109.46719 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47174 * 119.99835 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53503 * 87.98291 * 207.38069 * 10 9 7 12 12 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 13 13 H 1.09001 * 113.46506 * 267.40214 * 12 9 7 14 14 C 1.53001 * 113.46558 * 37.83696 * 12 9 7 15 15 N 1.46504 * 109.46966 * 285.49627 * 14 12 9 16 16 C 1.34779 * 119.99668 * 180.02562 * 15 14 12 17 17 O 1.21518 * 119.99881 * 359.97438 * 16 15 14 18 18 C 1.48165 * 119.99897 * 180.02562 * 16 15 14 19 19 C 1.39175 * 119.82114 * 179.72436 * 18 16 15 20 20 C 1.39007 * 119.25232 * 179.83514 * 19 18 16 21 21 C 1.37865 * 118.55452 * 0.28246 * 20 19 18 22 22 C 1.39113 * 119.07486 * 359.95439 * 21 20 19 23 23 N 1.31319 * 121.20402 * 359.95301 * 22 21 20 24 24 C 1.50500 * 122.48518 * 180.15094 * 21 20 19 25 25 C 1.52798 * 110.48001 * 342.27707 * 24 21 20 26 26 C 1.53317 * 108.50141 * 51.12257 * 25 24 21 27 27 C 1.50349 * 118.62171 * 179.90131 * 20 19 18 28 28 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 29 29 H 1.09003 * 113.46750 * 322.15715 * 10 9 7 30 30 H 1.09000 * 113.47312 * 92.60160 * 10 9 7 31 31 H 1.08996 * 114.20600 * 220.34475 * 11 10 9 32 32 H 1.08998 * 114.38368 * 87.53582 * 11 10 9 33 33 H 1.09002 * 109.47370 * 45.49563 * 14 12 9 34 34 H 1.09003 * 109.46961 * 165.49707 * 14 12 9 35 35 H 0.96999 * 120.00354 * 0.02562 * 15 14 12 36 36 H 1.07997 * 120.37651 * 0.06031 * 19 18 16 37 37 H 1.08003 * 119.40239 * 179.97438 * 22 21 20 38 38 H 1.09003 * 109.30020 * 102.58073 * 24 21 20 39 39 H 1.08999 * 109.30550 * 221.96413 * 24 21 20 40 40 H 1.09000 * 109.63083 * 170.82961 * 25 24 21 41 41 H 1.08998 * 109.62935 * 291.22475 * 25 24 21 42 42 H 1.09004 * 109.63933 * 49.85163 * 26 25 24 43 43 H 1.09000 * 109.63644 * 170.25803 * 26 25 24 44 44 H 1.09010 * 109.30576 * 42.61338 * 27 20 19 45 45 H 1.08998 * 109.30186 * 283.22944 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3445 -4.0911 0.7061 12 6 1.6797 -3.8155 0.0005 13 1 1.7403 -4.2477 -0.9983 14 6 2.9022 -4.1398 0.8615 15 7 4.1160 -3.6902 0.1751 16 6 5.3216 -3.8729 0.7492 17 8 5.4018 -4.4102 1.8362 18 6 6.5491 -3.4177 0.0554 19 6 7.7917 -3.6031 0.6542 20 6 8.9359 -3.1745 -0.0088 21 6 8.7969 -2.5721 -1.2410 22 6 7.5227 -2.4151 -1.7769 23 7 6.4572 -2.8303 -1.1313 24 6 9.9749 -2.0782 -2.0368 25 6 11.2038 -1.9352 -1.1400 26 6 11.3991 -3.2464 -0.3697 27 6 10.2707 -3.3799 0.6520 28 1 -0.4849 0.8401 -0.0004 29 1 -0.7200 -2.1579 0.6255 30 1 -0.4978 -2.9554 -0.9903 31 1 -0.1719 -4.9834 0.3522 32 1 0.3904 -4.0224 1.7929 33 1 2.8169 -3.6293 1.8207 34 1 2.9555 -5.2160 1.0261 35 1 4.0519 -3.2609 -0.6924 36 1 7.8665 -4.0778 1.6213 37 1 7.4077 -1.9435 -2.7417 38 1 10.1926 -2.7869 -2.8358 39 1 9.7336 -1.1095 -2.4744 40 1 12.0830 -1.7359 -1.7526 41 1 11.0520 -1.1145 -0.4390 42 1 11.3669 -4.0869 -1.0630 43 1 12.3612 -3.2306 0.1423 44 1 10.3033 -4.3745 1.0971 45 1 10.4035 -2.6335 1.4352 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038482025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:24 Heat of formation + Delta-G solvation = 39.482902 kcal Electronic energy + Delta-G solvation = -25898.622253 eV Core-core repulsion = 22303.018870 eV Total energy + Delta-G solvation = -3595.603383 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.94906 -39.17817 -38.03301 -36.90067 -34.07432 -33.00089 -32.17751 -31.44928 -29.77123 -28.03429 -27.57460 -24.58034 -24.03789 -23.42638 -22.88421 -22.00106 -20.86320 -19.61568 -19.11216 -17.76274 -16.82060 -16.52046 -15.84909 -15.46292 -15.20860 -15.17928 -14.89011 -14.61258 -14.23973 -14.15881 -13.84426 -13.65351 -13.33541 -13.16662 -12.90965 -12.79346 -12.43812 -12.29460 -11.83294 -11.48893 -11.29739 -11.27846 -11.07021 -10.94254 -10.90286 -10.73421 -10.55539 -10.12279 -9.86804 -9.79504 -9.56047 -9.45935 -9.15222 -9.02336 -8.76700 -8.48674 -6.85819 -5.72506 -3.04595 0.65022 1.13051 2.91327 3.41729 3.44982 3.46325 3.47886 3.92004 4.18349 4.31337 4.34081 4.48009 4.51222 4.62744 4.68572 4.95425 5.02886 5.13064 5.15199 5.24467 5.31920 5.41647 5.44559 5.47396 5.58013 5.59420 5.61602 5.67058 5.75274 5.76577 5.91803 5.94032 5.95945 6.11488 6.15985 6.34690 6.43733 6.54586 6.63449 6.75348 6.91887 7.27072 7.42806 7.62095 7.68918 8.02234 8.03308 8.55092 9.08334 9.74833 10.67047 11.44817 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.003529 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.420249 B = 7931.869074 C = 9213.757274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.211 4.211 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.152 3.848 11 C -0.161 4.161 12 C 0.127 3.873 13 H 0.049 0.951 14 C 0.119 3.881 15 N -0.690 5.690 16 C 0.565 3.435 17 O -0.548 6.548 18 C 0.080 3.920 19 C -0.113 4.113 20 C -0.045 4.045 21 C -0.114 4.114 22 C 0.103 3.897 23 N -0.453 5.453 24 C -0.078 4.078 25 C -0.121 4.121 26 C -0.120 4.120 27 C -0.083 4.083 28 H 0.253 0.747 29 H 0.072 0.928 30 H 0.025 0.975 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.414 0.586 36 H 0.146 0.854 37 H 0.161 0.839 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.373 -7.920 -3.318 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.338 4.338 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.026 3.974 11 C -0.200 4.200 12 C 0.019 3.981 13 H 0.066 0.934 14 C -0.005 4.005 15 N -0.339 5.339 16 C 0.349 3.651 17 O -0.426 6.426 18 C -0.056 4.056 19 C -0.134 4.134 20 C -0.053 4.053 21 C -0.117 4.117 22 C -0.059 4.059 23 N -0.164 5.164 24 C -0.116 4.116 25 C -0.159 4.159 26 C -0.157 4.157 27 C -0.120 4.120 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.251 0.749 36 H 0.164 0.836 37 H 0.178 0.822 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 19.538 -7.822 -2.876 21.241 hybrid contribution 1.137 1.144 -0.242 1.631 sum 20.675 -6.678 -3.118 21.950 Atomic orbital electron populations 1.69819 1.04934 1.25300 1.56678 1.24748 0.95611 0.97341 1.02657 0.86263 0.78523 0.83461 0.77940 1.21182 1.21566 1.21226 1.18849 0.90072 0.81332 1.43584 0.90153 1.45668 1.02586 0.98564 1.85833 1.22025 0.88696 0.90169 0.96487 1.23670 0.96882 0.99074 1.00349 1.22425 0.91888 0.87869 0.95893 0.93355 1.21895 0.83102 0.98312 0.97229 1.45852 1.05266 1.59079 1.23701 1.17855 0.83045 0.79402 0.84818 1.90738 1.86797 1.44585 1.20507 1.21209 0.93905 0.98334 0.92168 1.22099 0.91334 0.98874 1.01100 1.19837 0.95602 0.96027 0.93789 1.20737 0.96626 0.98979 0.95310 1.22849 0.86925 0.96667 0.99427 1.67557 1.33568 1.07956 1.07306 1.20432 0.92047 1.01691 0.97414 1.21572 0.97470 0.97994 0.98858 1.21564 0.97945 0.98134 0.98062 1.20481 0.90386 1.03043 0.98086 0.93706 0.90976 0.95723 0.92346 0.90192 0.90871 0.92054 0.74926 0.83611 0.82212 0.90089 0.90065 0.91138 0.91412 0.91464 0.91095 0.90037 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.53 11.51 55.49 0.64 -26.89 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.21 -5.87 10.55 -15.06 -0.16 -6.03 16 8 H 0.08 2.19 7.51 -52.49 -0.39 1.80 16 9 N -0.60 -15.11 3.65 -176.98 -0.65 -15.76 16 10 C 0.15 3.55 7.39 -8.50 -0.06 3.49 16 11 C -0.16 -3.00 8.03 -26.21 -0.21 -3.21 16 12 C 0.13 2.55 4.10 -72.39 -0.30 2.25 16 13 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 14 C 0.12 2.28 5.52 -4.04 -0.02 2.26 16 15 N -0.69 -13.18 5.32 -61.14 -0.33 -13.51 16 16 C 0.56 10.71 7.81 -12.18 -0.10 10.62 16 17 O -0.55 -11.41 16.33 5.35 0.09 -11.32 16 18 C 0.08 1.33 6.75 -83.06 -0.56 0.77 16 19 C -0.11 -1.57 9.26 -38.95 -0.36 -1.93 16 20 C -0.04 -0.50 5.74 -104.64 -0.60 -1.10 16 21 C -0.11 -1.21 5.75 -104.53 -0.60 -1.81 16 22 C 0.10 1.28 10.79 -17.45 -0.19 1.09 16 23 N -0.45 -7.18 9.55 -9.73 -0.09 -7.28 16 24 C -0.08 -0.57 5.71 -28.08 -0.16 -0.73 16 25 C -0.12 -0.77 5.97 -26.67 -0.16 -0.93 16 26 C -0.12 -0.75 5.98 -26.66 -0.16 -0.91 16 27 C -0.08 -0.66 5.72 -28.15 -0.16 -0.82 16 28 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.07 1.88 7.13 -51.93 -0.37 1.51 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.48 8.12 -51.93 -0.42 1.06 16 33 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.41 8.02 7.72 -40.82 -0.31 7.71 16 36 H 0.15 1.93 7.64 -52.49 -0.40 1.53 16 37 H 0.16 1.56 8.06 -52.48 -0.42 1.14 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.53 8.13 -51.93 -0.42 0.10 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.47 8.10 -51.93 -0.42 0.04 16 42 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 368.03 15.07 5.55 5.55 Total: -1.00 -33.18 368.03 -10.66 -43.84 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.95 Total: 4.97 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -3.89 Total: 2.71 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: -0.43 Total: -63.43 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.18 -10.66 -43.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038482025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.323 kcal (2) G-P(sol) polarization free energy of solvation -33.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds