Wall clock time and date at job start Tue Mar 31 2020 11:44:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86797 * 120.00467 * 2 1
4 4 H 1.48495 * 109.47363 * 240.00008 * 3 2 1
5 5 H 1.48506 * 109.46719 * 359.97438 * 3 2 1
6 6 H 1.48502 * 109.47174 * 119.99835 * 3 2 1
7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3
8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1
9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1
10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2
11 11 C 1.53503 * 87.98291 * 207.38069 * 10 9 7
12 12 C 1.47066 * 136.06113 * 179.97438 * 9 7 2
13 13 H 1.09001 * 113.46506 * 267.40214 * 12 9 7
14 14 C 1.53001 * 113.46558 * 37.83696 * 12 9 7
15 15 N 1.46504 * 109.46966 * 285.49627 * 14 12 9
16 16 C 1.34779 * 119.99668 * 180.02562 * 15 14 12
17 17 O 1.21518 * 119.99881 * 359.97438 * 16 15 14
18 18 C 1.48165 * 119.99897 * 180.02562 * 16 15 14
19 19 C 1.39175 * 119.82114 * 179.72436 * 18 16 15
20 20 C 1.39007 * 119.25232 * 179.83514 * 19 18 16
21 21 C 1.37865 * 118.55452 * 0.28246 * 20 19 18
22 22 C 1.39113 * 119.07486 * 359.95439 * 21 20 19
23 23 N 1.31319 * 121.20402 * 359.95301 * 22 21 20
24 24 C 1.50500 * 122.48518 * 180.15094 * 21 20 19
25 25 C 1.52798 * 110.48001 * 342.27707 * 24 21 20
26 26 C 1.53317 * 108.50141 * 51.12257 * 25 24 21
27 27 C 1.50349 * 118.62171 * 179.90131 * 20 19 18
28 28 H 0.96999 * 119.99537 * 0.02562 * 1 2 3
29 29 H 1.09003 * 113.46750 * 322.15715 * 10 9 7
30 30 H 1.09000 * 113.47312 * 92.60160 * 10 9 7
31 31 H 1.08996 * 114.20600 * 220.34475 * 11 10 9
32 32 H 1.08998 * 114.38368 * 87.53582 * 11 10 9
33 33 H 1.09002 * 109.47370 * 45.49563 * 14 12 9
34 34 H 1.09003 * 109.46961 * 165.49707 * 14 12 9
35 35 H 0.96999 * 120.00354 * 0.02562 * 15 14 12
36 36 H 1.07997 * 120.37651 * 0.06031 * 19 18 16
37 37 H 1.08003 * 119.40239 * 179.97438 * 22 21 20
38 38 H 1.09003 * 109.30020 * 102.58073 * 24 21 20
39 39 H 1.08999 * 109.30550 * 221.96413 * 24 21 20
40 40 H 1.09000 * 109.63083 * 170.82961 * 25 24 21
41 41 H 1.08998 * 109.62935 * 291.22475 * 25 24 21
42 42 H 1.09004 * 109.63933 * 49.85163 * 26 25 24
43 43 H 1.09000 * 109.63644 * 170.25803 * 26 25 24
44 44 H 1.09010 * 109.30576 * 42.61338 * 27 20 19
45 45 H 1.08998 * 109.30186 * 283.22944 * 27 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6176 0.0000
4 1 3.1041 1.6963 -1.2124
5 1 1.2853 2.7464 -0.0006
6 1 3.1041 1.6963 1.2125
7 6 2.0102 -1.2022 0.0005
8 1 3.0901 -1.2023 0.0001
9 7 1.3255 -2.3881 0.0005
10 6 -0.0878 -2.7948 0.0068
11 6 0.3445 -4.0911 0.7061
12 6 1.6797 -3.8155 0.0005
13 1 1.7403 -4.2477 -0.9983
14 6 2.9022 -4.1398 0.8615
15 7 4.1160 -3.6902 0.1751
16 6 5.3216 -3.8729 0.7492
17 8 5.4018 -4.4102 1.8362
18 6 6.5491 -3.4177 0.0554
19 6 7.7917 -3.6031 0.6542
20 6 8.9359 -3.1745 -0.0088
21 6 8.7969 -2.5721 -1.2410
22 6 7.5227 -2.4151 -1.7769
23 7 6.4572 -2.8303 -1.1313
24 6 9.9749 -2.0782 -2.0368
25 6 11.2038 -1.9352 -1.1400
26 6 11.3991 -3.2464 -0.3697
27 6 10.2707 -3.3799 0.6520
28 1 -0.4849 0.8401 -0.0004
29 1 -0.7200 -2.1579 0.6255
30 1 -0.4978 -2.9554 -0.9903
31 1 -0.1719 -4.9834 0.3522
32 1 0.3904 -4.0224 1.7929
33 1 2.8169 -3.6293 1.8207
34 1 2.9555 -5.2160 1.0261
35 1 4.0519 -3.2609 -0.6924
36 1 7.8665 -4.0778 1.6213
37 1 7.4077 -1.9435 -2.7417
38 1 10.1926 -2.7869 -2.8358
39 1 9.7336 -1.1095 -2.4744
40 1 12.0830 -1.7359 -1.7526
41 1 11.0520 -1.1145 -0.4390
42 1 11.3669 -4.0869 -1.0630
43 1 12.3612 -3.2306 0.1423
44 1 10.3033 -4.3745 1.0971
45 1 10.4035 -2.6335 1.4352
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001038482025.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:44:24
Heat of formation + Delta-G solvation = 39.482902 kcal
Electronic energy + Delta-G solvation = -25898.622253 eV
Core-core repulsion = 22303.018870 eV
Total energy + Delta-G solvation = -3595.603383 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-40.94906 -39.17817 -38.03301 -36.90067 -34.07432 -33.00089 -32.17751 -31.44928
-29.77123 -28.03429 -27.57460 -24.58034 -24.03789 -23.42638 -22.88421 -22.00106
-20.86320 -19.61568 -19.11216 -17.76274 -16.82060 -16.52046 -15.84909 -15.46292
-15.20860 -15.17928 -14.89011 -14.61258 -14.23973 -14.15881 -13.84426 -13.65351
-13.33541 -13.16662 -12.90965 -12.79346 -12.43812 -12.29460 -11.83294 -11.48893
-11.29739 -11.27846 -11.07021 -10.94254 -10.90286 -10.73421 -10.55539 -10.12279
-9.86804 -9.79504 -9.56047 -9.45935 -9.15222 -9.02336 -8.76700 -8.48674
-6.85819 -5.72506 -3.04595 0.65022 1.13051 2.91327 3.41729 3.44982
3.46325 3.47886 3.92004 4.18349 4.31337 4.34081 4.48009 4.51222
4.62744 4.68572 4.95425 5.02886 5.13064 5.15199 5.24467 5.31920
5.41647 5.44559 5.47396 5.58013 5.59420 5.61602 5.67058 5.75274
5.76577 5.91803 5.94032 5.95945 6.11488 6.15985 6.34690 6.43733
6.54586 6.63449 6.75348 6.91887 7.27072 7.42806 7.62095 7.68918
8.02234 8.03308 8.55092 9.08334 9.74833 10.67047 11.44817
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.014887 B = 0.003529 C = 0.003038
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1880.420249 B = 7931.869074 C = 9213.757274
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.920 5.920
2 C -0.007 4.007
3 Si 0.908 3.092
4 H -0.285 1.285
5 H -0.290 1.290
6 H -0.286 1.286
7 C -0.211 4.211
8 H 0.081 0.919
9 N -0.601 5.601
10 C 0.152 3.848
11 C -0.161 4.161
12 C 0.127 3.873
13 H 0.049 0.951
14 C 0.119 3.881
15 N -0.690 5.690
16 C 0.565 3.435
17 O -0.548 6.548
18 C 0.080 3.920
19 C -0.113 4.113
20 C -0.045 4.045
21 C -0.114 4.114
22 C 0.103 3.897
23 N -0.453 5.453
24 C -0.078 4.078
25 C -0.121 4.121
26 C -0.120 4.120
27 C -0.083 4.083
28 H 0.253 0.747
29 H 0.072 0.928
30 H 0.025 0.975
31 H 0.058 0.942
32 H 0.079 0.921
33 H 0.073 0.927
34 H 0.061 0.939
35 H 0.414 0.586
36 H 0.146 0.854
37 H 0.161 0.839
38 H 0.081 0.919
39 H 0.081 0.919
40 H 0.070 0.930
41 H 0.067 0.933
42 H 0.067 0.933
43 H 0.070 0.930
44 H 0.081 0.919
45 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.373 -7.920 -3.318 22.108
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.567 5.567
2 C -0.204 4.204
3 Si 0.738 3.262
4 H -0.212 1.212
5 H -0.216 1.216
6 H -0.212 1.212
7 C -0.338 4.338
8 H 0.098 0.902
9 N -0.327 5.327
10 C 0.026 3.974
11 C -0.200 4.200
12 C 0.019 3.981
13 H 0.066 0.934
14 C -0.005 4.005
15 N -0.339 5.339
16 C 0.349 3.651
17 O -0.426 6.426
18 C -0.056 4.056
19 C -0.134 4.134
20 C -0.053 4.053
21 C -0.117 4.117
22 C -0.059 4.059
23 N -0.164 5.164
24 C -0.116 4.116
25 C -0.159 4.159
26 C -0.157 4.157
27 C -0.120 4.120
28 H 0.063 0.937
29 H 0.090 0.910
30 H 0.043 0.957
31 H 0.077 0.923
32 H 0.098 0.902
33 H 0.091 0.909
34 H 0.079 0.921
35 H 0.251 0.749
36 H 0.164 0.836
37 H 0.178 0.822
38 H 0.099 0.901
39 H 0.099 0.901
40 H 0.089 0.911
41 H 0.086 0.914
42 H 0.085 0.915
43 H 0.089 0.911
44 H 0.100 0.900
45 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges 19.538 -7.822 -2.876 21.241
hybrid contribution 1.137 1.144 -0.242 1.631
sum 20.675 -6.678 -3.118 21.950
Atomic orbital electron populations
1.69819 1.04934 1.25300 1.56678 1.24748 0.95611 0.97341 1.02657
0.86263 0.78523 0.83461 0.77940 1.21182 1.21566 1.21226 1.18849
0.90072 0.81332 1.43584 0.90153 1.45668 1.02586 0.98564 1.85833
1.22025 0.88696 0.90169 0.96487 1.23670 0.96882 0.99074 1.00349
1.22425 0.91888 0.87869 0.95893 0.93355 1.21895 0.83102 0.98312
0.97229 1.45852 1.05266 1.59079 1.23701 1.17855 0.83045 0.79402
0.84818 1.90738 1.86797 1.44585 1.20507 1.21209 0.93905 0.98334
0.92168 1.22099 0.91334 0.98874 1.01100 1.19837 0.95602 0.96027
0.93789 1.20737 0.96626 0.98979 0.95310 1.22849 0.86925 0.96667
0.99427 1.67557 1.33568 1.07956 1.07306 1.20432 0.92047 1.01691
0.97414 1.21572 0.97470 0.97994 0.98858 1.21564 0.97945 0.98134
0.98062 1.20481 0.90386 1.03043 0.98086 0.93706 0.90976 0.95723
0.92346 0.90192 0.90871 0.92054 0.74926 0.83611 0.82212 0.90089
0.90065 0.91138 0.91412 0.91464 0.91095 0.90037 0.89864
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -27.53 11.51 55.49 0.64 -26.89 16
2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16
3 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 16
4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16
6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
7 C -0.21 -5.87 10.55 -15.06 -0.16 -6.03 16
8 H 0.08 2.19 7.51 -52.49 -0.39 1.80 16
9 N -0.60 -15.11 3.65 -176.98 -0.65 -15.76 16
10 C 0.15 3.55 7.39 -8.50 -0.06 3.49 16
11 C -0.16 -3.00 8.03 -26.21 -0.21 -3.21 16
12 C 0.13 2.55 4.10 -72.39 -0.30 2.25 16
13 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16
14 C 0.12 2.28 5.52 -4.04 -0.02 2.26 16
15 N -0.69 -13.18 5.32 -61.14 -0.33 -13.51 16
16 C 0.56 10.71 7.81 -12.18 -0.10 10.62 16
17 O -0.55 -11.41 16.33 5.35 0.09 -11.32 16
18 C 0.08 1.33 6.75 -83.06 -0.56 0.77 16
19 C -0.11 -1.57 9.26 -38.95 -0.36 -1.93 16
20 C -0.04 -0.50 5.74 -104.64 -0.60 -1.10 16
21 C -0.11 -1.21 5.75 -104.53 -0.60 -1.81 16
22 C 0.10 1.28 10.79 -17.45 -0.19 1.09 16
23 N -0.45 -7.18 9.55 -9.73 -0.09 -7.28 16
24 C -0.08 -0.57 5.71 -28.08 -0.16 -0.73 16
25 C -0.12 -0.77 5.97 -26.67 -0.16 -0.93 16
26 C -0.12 -0.75 5.98 -26.66 -0.16 -0.91 16
27 C -0.08 -0.66 5.72 -28.15 -0.16 -0.82 16
28 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16
29 H 0.07 1.88 7.13 -51.93 -0.37 1.51 16
30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16
31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
32 H 0.08 1.48 8.12 -51.93 -0.42 1.06 16
33 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16
34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
35 H 0.41 8.02 7.72 -40.82 -0.31 7.71 16
36 H 0.15 1.93 7.64 -52.49 -0.40 1.53 16
37 H 0.16 1.56 8.06 -52.48 -0.42 1.14 16
38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16
39 H 0.08 0.53 8.13 -51.93 -0.42 0.10 16
40 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16
41 H 0.07 0.47 8.10 -51.93 -0.42 0.04 16
42 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16
43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16
44 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16
45 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16
LS Contribution 368.03 15.07 5.55 5.55
Total: -1.00 -33.18 368.03 -10.66 -43.84
By element:
Atomic # 1 Polarization: 11.92 SS G_CDS: -6.95 Total: 4.97 kcal
Atomic # 6 Polarization: 6.60 SS G_CDS: -3.89 Total: 2.71 kcal
Atomic # 7 Polarization: -63.00 SS G_CDS: -0.43 Total: -63.43 kcal
Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.32 kcal
Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal
Total LS contribution 5.55 Total: 5.55 kcal
Total: -33.18 -10.66 -43.84 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001038482025.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.323 kcal
(2) G-P(sol) polarization free energy of solvation -33.180 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.143 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.660 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.840 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.483 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds