Wall clock time and date at job start Tue Mar 31 2020 11:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48495 * 109.47363 * 240.00008 * 3 2 1 5 5 H 1.48506 * 109.46719 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47174 * 119.99835 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53503 * 87.98291 * 207.38069 * 10 9 7 12 12 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 13 13 H 1.09001 * 113.46506 * 267.40214 * 12 9 7 14 14 C 1.53001 * 113.46558 * 37.83696 * 12 9 7 15 15 N 1.46504 * 109.46966 * 285.49627 * 14 12 9 16 16 C 1.34779 * 119.99668 * 180.02562 * 15 14 12 17 17 O 1.21518 * 119.99881 * 359.97438 * 16 15 14 18 18 C 1.48165 * 119.99897 * 180.02562 * 16 15 14 19 19 C 1.39175 * 119.82114 * 179.72436 * 18 16 15 20 20 C 1.39007 * 119.25232 * 179.83514 * 19 18 16 21 21 C 1.37865 * 118.55452 * 0.28246 * 20 19 18 22 22 C 1.39113 * 119.07486 * 359.95439 * 21 20 19 23 23 N 1.31319 * 121.20402 * 359.95301 * 22 21 20 24 24 C 1.50500 * 122.48518 * 180.15094 * 21 20 19 25 25 C 1.52798 * 110.48001 * 342.27707 * 24 21 20 26 26 C 1.53317 * 108.50141 * 51.12257 * 25 24 21 27 27 C 1.50349 * 118.62171 * 179.90131 * 20 19 18 28 28 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 29 29 H 1.09003 * 113.46750 * 322.15715 * 10 9 7 30 30 H 1.09000 * 113.47312 * 92.60160 * 10 9 7 31 31 H 1.08996 * 114.20600 * 220.34475 * 11 10 9 32 32 H 1.08998 * 114.38368 * 87.53582 * 11 10 9 33 33 H 1.09002 * 109.47370 * 45.49563 * 14 12 9 34 34 H 1.09003 * 109.46961 * 165.49707 * 14 12 9 35 35 H 0.96999 * 120.00354 * 0.02562 * 15 14 12 36 36 H 1.07997 * 120.37651 * 0.06031 * 19 18 16 37 37 H 1.08003 * 119.40239 * 179.97438 * 22 21 20 38 38 H 1.09003 * 109.30020 * 102.58073 * 24 21 20 39 39 H 1.08999 * 109.30550 * 221.96413 * 24 21 20 40 40 H 1.09000 * 109.63083 * 170.82961 * 25 24 21 41 41 H 1.08998 * 109.62935 * 291.22475 * 25 24 21 42 42 H 1.09004 * 109.63933 * 49.85163 * 26 25 24 43 43 H 1.09000 * 109.63644 * 170.25803 * 26 25 24 44 44 H 1.09010 * 109.30576 * 42.61338 * 27 20 19 45 45 H 1.08998 * 109.30186 * 283.22944 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3445 -4.0911 0.7061 12 6 1.6797 -3.8155 0.0005 13 1 1.7403 -4.2477 -0.9983 14 6 2.9022 -4.1398 0.8615 15 7 4.1160 -3.6902 0.1751 16 6 5.3216 -3.8729 0.7492 17 8 5.4018 -4.4102 1.8362 18 6 6.5491 -3.4177 0.0554 19 6 7.7917 -3.6031 0.6542 20 6 8.9359 -3.1745 -0.0088 21 6 8.7969 -2.5721 -1.2410 22 6 7.5227 -2.4151 -1.7769 23 7 6.4572 -2.8303 -1.1313 24 6 9.9749 -2.0782 -2.0368 25 6 11.2038 -1.9352 -1.1400 26 6 11.3991 -3.2464 -0.3697 27 6 10.2707 -3.3799 0.6520 28 1 -0.4849 0.8401 -0.0004 29 1 -0.7200 -2.1579 0.6255 30 1 -0.4978 -2.9554 -0.9903 31 1 -0.1719 -4.9834 0.3522 32 1 0.3904 -4.0224 1.7929 33 1 2.8169 -3.6293 1.8207 34 1 2.9555 -5.2160 1.0261 35 1 4.0519 -3.2609 -0.6924 36 1 7.8665 -4.0778 1.6213 37 1 7.4077 -1.9435 -2.7417 38 1 10.1926 -2.7869 -2.8358 39 1 9.7336 -1.1095 -2.4744 40 1 12.0830 -1.7359 -1.7526 41 1 11.0520 -1.1145 -0.4390 42 1 11.3669 -4.0869 -1.0630 43 1 12.3612 -3.2306 0.1423 44 1 10.3033 -4.3745 1.0971 45 1 10.4035 -2.6335 1.4352 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038482025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:23 Heat of formation + Delta-G solvation = 18.425347 kcal Electronic energy + Delta-G solvation = -25899.535377 eV Core-core repulsion = 22303.018870 eV Total energy + Delta-G solvation = -3596.516507 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.96948 -40.60899 -39.67382 -37.72843 -35.61609 -34.25944 -33.86457 -32.30726 -30.69026 -29.96196 -29.11234 -25.54339 -25.40199 -24.92969 -23.72929 -23.47775 -22.04960 -21.10155 -20.39362 -19.09678 -18.33695 -17.89337 -17.14311 -16.75507 -16.53546 -16.47988 -16.15783 -15.85250 -15.59888 -15.38025 -14.96425 -14.76901 -14.67314 -14.49119 -14.03670 -13.67823 -13.56031 -13.35880 -13.27348 -12.99354 -12.96805 -12.73130 -12.62325 -12.36100 -11.89147 -11.88352 -11.77069 -11.67084 -11.53571 -11.40453 -11.02774 -10.85054 -10.49631 -10.43787 -10.17881 -9.85678 -8.90116 -7.88813 -5.20058 -0.42164 0.17087 1.40148 1.42710 1.48785 1.63409 2.08582 2.45559 2.77715 3.10582 3.32697 3.42993 3.55751 3.62118 3.79123 3.84145 3.91487 4.02789 4.03658 4.12405 4.31902 4.33154 4.40946 4.56599 4.59309 4.61865 4.66957 4.72200 4.76339 4.87456 4.91866 5.00817 5.04114 5.04877 5.06888 5.21767 5.25833 5.31378 5.35834 5.38186 5.45597 5.57912 5.65372 5.72901 5.96681 6.38190 6.77428 6.93878 7.09106 7.62701 8.62564 9.28530 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.003529 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.420249 B = 7931.869074 C = 9213.757274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.966 3.034 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.207 4.207 8 H 0.079 0.921 9 N -0.629 5.629 10 C 0.144 3.856 11 C -0.131 4.131 12 C 0.131 3.869 13 H 0.067 0.933 14 C 0.127 3.873 15 N -0.693 5.693 16 C 0.561 3.439 17 O -0.575 6.575 18 C 0.046 3.954 19 C -0.117 4.117 20 C -0.046 4.046 21 C -0.100 4.100 22 C 0.092 3.908 23 N -0.481 5.481 24 C -0.079 4.079 25 C -0.121 4.121 26 C -0.117 4.117 27 C -0.084 4.084 28 H 0.246 0.754 29 H 0.038 0.962 30 H 0.023 0.977 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.412 0.588 36 H 0.144 0.856 37 H 0.185 0.815 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.330 -8.531 -4.396 25.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.260 4.260 3 Si 0.795 3.205 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.336 4.336 8 H 0.096 0.904 9 N -0.356 5.356 10 C 0.018 3.982 11 C -0.170 4.170 12 C 0.025 3.975 13 H 0.084 0.916 14 C 0.003 3.997 15 N -0.342 5.342 16 C 0.347 3.653 17 O -0.456 6.456 18 C -0.089 4.089 19 C -0.138 4.138 20 C -0.053 4.053 21 C -0.102 4.102 22 C -0.070 4.070 23 N -0.193 5.193 24 C -0.116 4.116 25 C -0.158 4.158 26 C -0.154 4.154 27 C -0.121 4.121 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.248 0.752 36 H 0.162 0.838 37 H 0.202 0.798 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 22.513 -8.469 -3.958 24.377 hybrid contribution 0.319 1.282 0.044 1.322 sum 22.832 -7.187 -3.914 24.255 Atomic orbital electron populations 1.69992 1.06123 1.25320 1.58722 1.25480 0.96443 1.00323 1.03784 0.85334 0.77298 0.79909 0.77948 1.20255 1.21756 1.21304 1.19100 0.90269 0.82705 1.41504 0.90367 1.45985 1.03776 0.99923 1.85870 1.22051 0.87591 0.92115 0.96410 1.23481 0.95332 0.98169 1.00010 1.22582 0.93038 0.84971 0.96919 0.91617 1.21738 0.83045 0.99276 0.95672 1.45865 1.05470 1.59275 1.23575 1.18301 0.83752 0.78646 0.84559 1.90698 1.87327 1.45924 1.21664 1.20909 0.93462 1.01176 0.93330 1.22206 0.91465 0.98940 1.01181 1.20226 0.96150 0.95044 0.93920 1.21170 0.97261 0.96811 0.94935 1.23382 0.87046 0.96410 1.00175 1.67458 1.35458 1.08916 1.07441 1.20583 0.90904 1.02596 0.97519 1.21605 0.97684 0.97712 0.98846 1.21583 0.97848 0.98259 0.97705 1.20593 0.89192 1.03661 0.98637 0.94461 0.94392 0.95888 0.87988 0.90044 0.93566 0.89721 0.75177 0.83807 0.79787 0.88267 0.88782 0.89042 0.92007 0.91217 0.89311 0.89320 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.63 11.51 21.65 0.25 -58.38 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.97 47.62 29.55 68.60 2.03 49.65 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 7 C -0.21 -11.75 10.55 84.03 0.89 -10.86 16 8 H 0.08 4.36 7.51 -2.91 -0.02 4.34 16 9 N -0.63 -32.02 3.65 -713.85 -2.61 -34.62 16 10 C 0.14 6.79 7.39 83.18 0.61 7.40 16 11 C -0.13 -4.68 8.03 30.94 0.25 -4.44 16 12 C 0.13 5.15 4.10 41.80 0.17 5.33 16 13 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 14 C 0.13 4.85 5.52 86.38 0.48 5.32 16 15 N -0.69 -26.90 5.32 -465.64 -2.48 -29.37 16 16 C 0.56 21.87 7.81 86.88 0.68 22.55 16 17 O -0.58 -24.64 16.33 -3.77 -0.06 -24.70 16 18 C 0.05 1.56 6.75 41.87 0.28 1.84 16 19 C -0.12 -3.23 9.26 22.68 0.21 -3.02 16 20 C -0.05 -0.95 5.74 -19.88 -0.11 -1.06 16 21 C -0.10 -1.89 5.75 -19.81 -0.11 -2.01 16 22 C 0.09 2.16 10.79 84.98 0.92 3.07 16 23 N -0.48 -15.27 9.55 -184.71 -1.76 -17.03 16 24 C -0.08 -0.86 5.71 29.72 0.17 -0.69 16 25 C -0.12 -1.06 5.97 30.63 0.18 -0.88 16 26 C -0.12 -1.05 5.98 30.64 0.18 -0.87 16 27 C -0.08 -1.14 5.72 29.68 0.17 -0.97 16 28 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 29 H 0.04 2.03 7.13 -2.39 -0.02 2.02 16 30 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.08 2.90 8.12 -2.39 -0.02 2.88 16 33 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.41 16.24 7.72 -92.71 -0.72 15.53 16 36 H 0.14 3.89 7.64 -2.91 -0.02 3.87 16 37 H 0.19 3.21 8.06 -2.91 -0.02 3.19 16 38 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.09 0.85 8.13 -2.39 -0.02 0.83 16 40 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.06 0.64 8.10 -2.39 -0.02 0.62 16 42 H 0.07 0.63 8.10 -2.38 -0.02 0.61 16 43 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 45 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -74.55 368.03 1.08 -73.48 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.28 Total: 23.75 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: 5.43 Total: 17.24 kcal Atomic # 7 Polarization: -132.81 SS G_CDS: -6.60 Total: -139.41 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.06 Total: -24.70 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -74.55 1.08 -73.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038482025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.902 kcal (2) G-P(sol) polarization free energy of solvation -74.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds