Wall clock time and date at job start Tue Mar 31 2020 11:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00268 * 2 1 4 4 H 1.48492 * 109.47208 * 275.00058 * 3 2 1 5 5 H 1.48499 * 109.46689 * 34.99971 * 3 2 1 6 6 H 1.48496 * 109.47123 * 154.99894 * 3 2 1 7 7 C 1.38810 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00448 * 174.87898 * 7 2 1 9 9 N 1.36942 * 120.00186 * 354.87705 * 7 2 1 10 10 C 1.46704 * 125.32558 * 185.00350 * 9 7 2 11 11 C 1.54039 * 106.82879 * 161.84346 * 10 9 7 12 12 H 1.09002 * 113.43357 * 262.66762 * 11 10 9 13 13 C 1.55123 * 108.25854 * 135.80994 * 11 10 9 14 14 C 1.54857 * 101.77444 * 286.08464 * 13 11 10 15 15 N 1.47398 * 104.81197 * 322.81717 * 14 13 11 16 16 C 1.34772 * 125.58665 * 204.60379 * 15 14 13 17 17 O 1.21698 * 119.99742 * 181.81537 * 16 15 14 18 18 C 1.46674 * 120.00508 * 1.81592 * 16 15 14 19 19 C 1.37749 * 126.23061 * 171.91031 * 18 16 15 20 20 C 1.40108 * 107.11001 * 179.97438 * 19 18 16 21 21 C 1.35320 * 107.92960 * 0.02562 * 20 19 18 22 22 N 1.36010 * 108.67912 * 359.97438 * 21 20 19 23 23 H 0.96996 * 125.63293 * 180.02562 * 22 21 20 24 24 C 1.51561 * 110.14247 * 180.02562 * 21 20 19 25 25 C 1.54403 * 105.00390 * 16.94447 * 24 21 20 26 26 C 1.51353 * 141.74226 * 179.97438 * 20 19 18 27 27 C 1.46732 * 108.82232 * 24.87218 * 15 14 13 28 28 H 1.08996 * 111.33014 * 235.86304 * 27 15 14 29 29 C 1.46637 * 125.32039 * 5.02867 * 9 7 2 30 30 H 0.97001 * 119.99484 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.98645 * 42.49867 * 10 9 7 32 32 H 1.09004 * 109.98624 * 281.18852 * 10 9 7 33 33 H 1.09002 * 110.96703 * 167.96511 * 13 11 10 34 34 H 1.09002 * 111.00473 * 44.22122 * 13 11 10 35 35 H 1.09003 * 110.36868 * 203.97989 * 14 13 11 36 36 H 1.09008 * 110.36549 * 81.65065 * 14 13 11 37 37 H 1.08004 * 126.44963 * 359.96442 * 19 18 16 38 38 H 1.09004 * 110.31504 * 258.08219 * 24 21 20 39 39 H 1.08997 * 110.36563 * 135.84113 * 24 21 20 40 40 H 1.08991 * 110.92429 * 216.00885 * 25 24 21 41 41 H 1.09004 * 110.91865 * 92.39868 * 25 24 21 42 42 H 1.09005 * 110.33502 * 44.15763 * 26 20 19 43 43 H 1.08994 * 110.43064 * 281.95930 * 26 20 19 44 44 H 1.09000 * 109.75153 * 300.90728 * 29 9 7 45 45 H 1.08996 * 109.75543 * 61.60923 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3921 2.1074 -1.3947 5 1 1.5046 2.6198 0.8031 6 1 3.5967 1.4119 0.5917 7 6 2.0102 -1.2022 -0.0005 8 1 3.0870 -1.2041 -0.0840 9 7 1.3296 -2.3858 0.1048 10 6 1.9467 -3.7117 0.2206 11 6 0.8639 -4.6613 0.7672 12 1 0.9245 -4.8131 1.8449 13 6 0.9191 -5.9809 -0.0463 14 6 0.2872 -5.5490 -1.3925 15 7 -0.7836 -4.6067 -1.0209 16 6 -1.8780 -4.3329 -1.7582 17 8 -2.6846 -3.5097 -1.3674 18 6 -2.0971 -5.0271 -3.0316 19 6 -3.2340 -4.9662 -3.8070 20 6 -3.0121 -5.7766 -4.9282 21 6 -1.7718 -6.3067 -4.8202 22 7 -1.2046 -5.8570 -3.6687 23 1 -0.3172 -6.0840 -3.3496 24 6 -1.4783 -7.1953 -6.0124 25 6 -2.5281 -6.8001 -7.0735 26 6 -3.6790 -6.2541 -6.2002 27 6 -0.4595 -4.0109 0.2802 28 1 -1.2646 -4.1654 0.9986 29 6 -0.1299 -2.5261 0.1191 30 1 -0.4849 0.8401 -0.0004 31 1 2.7897 -3.6714 0.9103 32 1 2.2820 -4.0533 -0.7587 33 1 0.3242 -6.7591 0.4319 34 1 1.9486 -6.3106 -0.1866 35 1 -0.1300 -6.4127 -1.9102 36 1 1.0293 -5.0526 -2.0179 37 1 -4.1283 -4.4004 -3.5912 38 1 -1.5921 -8.2444 -5.7396 39 1 -0.4720 -7.0075 -6.3869 40 1 -2.8520 -7.6707 -7.6437 41 1 -2.1400 -6.0259 -7.7354 42 1 -4.1747 -5.4235 -6.7029 43 1 -4.3960 -7.0449 -5.9801 44 1 -0.5461 -1.9615 0.9534 45 1 -0.5447 -2.1571 -0.8189 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076446903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:00 Heat of formation + Delta-G solvation = 66.528276 kcal Electronic energy + Delta-G solvation = -26974.255563 eV Core-core repulsion = 23379.824955 eV Total energy + Delta-G solvation = -3594.430608 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.68227 -40.01481 -37.70569 -36.06506 -34.83183 -32.24918 -31.04346 -30.92012 -29.24813 -27.73688 -27.37301 -26.32873 -24.77105 -23.48026 -22.06575 -20.81280 -20.55608 -19.74410 -19.20635 -18.91039 -17.16631 -16.74454 -16.30071 -15.84925 -15.46799 -15.01400 -14.47625 -14.40176 -13.83577 -13.68911 -13.44124 -13.35861 -13.04262 -12.88366 -12.81976 -12.63945 -12.20206 -11.99731 -11.80730 -11.66106 -11.43848 -11.33069 -11.13687 -11.10139 -11.00732 -10.75713 -10.50174 -10.28486 -10.18548 -9.90572 -9.72266 -9.58468 -8.73941 -8.55473 -8.29551 -7.85587 -6.80047 -5.66473 -3.02668 1.64804 2.70143 2.88047 3.26087 3.42103 3.46560 3.49716 3.69159 4.38339 4.48075 4.49216 4.58656 4.63341 4.80744 4.91880 5.03436 5.11497 5.26471 5.35325 5.38677 5.45504 5.49033 5.54764 5.58102 5.65050 5.68546 5.72390 5.78430 5.87957 5.93398 5.98850 6.07765 6.09584 6.24124 6.32458 6.44755 6.51092 6.59532 6.79228 6.85056 7.06646 7.42534 7.59302 7.65542 7.86497 7.93223 8.31052 8.53800 9.24778 9.85930 10.49270 11.43381 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016464 B = 0.003735 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.265718 B = 7494.352096 C = 8142.576968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.004 4.004 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.237 4.237 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.142 3.858 11 C -0.110 4.110 12 H 0.101 0.899 13 C -0.121 4.121 14 C 0.088 3.912 15 N -0.604 5.604 16 C 0.600 3.400 17 O -0.515 6.515 18 C -0.028 4.028 19 C -0.093 4.093 20 C -0.195 4.195 21 C 0.003 3.997 22 N -0.526 5.526 23 H 0.414 0.586 24 C -0.039 4.039 25 C -0.115 4.115 26 C -0.048 4.048 27 C 0.118 3.882 28 H 0.081 0.919 29 C 0.174 3.826 30 H 0.254 0.746 31 H 0.036 0.964 32 H 0.015 0.985 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.146 0.854 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.084 -19.364 -9.387 21.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.201 4.201 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.366 4.366 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.016 3.984 11 C -0.129 4.129 12 H 0.119 0.881 13 C -0.160 4.160 14 C -0.035 4.035 15 N -0.338 5.338 16 C 0.389 3.611 17 O -0.390 6.390 18 C -0.141 4.141 19 C -0.119 4.119 20 C -0.202 4.202 21 C -0.115 4.115 22 N -0.127 5.127 23 H 0.257 0.743 24 C -0.077 4.077 25 C -0.153 4.153 26 C -0.086 4.086 27 C 0.015 3.985 28 H 0.099 0.901 29 C 0.048 3.952 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.032 0.968 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.163 0.837 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.492 -18.655 -9.108 20.909 hybrid contribution 1.008 0.834 0.159 1.318 sum -1.484 -17.821 -8.949 19.997 Atomic orbital electron populations 1.70002 1.04803 1.25162 1.55893 1.24868 0.95674 0.97730 1.01845 0.86138 0.78621 0.83741 0.77464 1.21704 1.21567 1.20639 1.18987 0.90708 0.82387 1.44476 0.90484 1.44225 1.01415 1.00648 1.86580 1.21297 0.93976 0.86404 0.96765 1.23164 0.95890 0.94064 0.99826 0.88063 1.22740 1.01156 0.97626 0.94460 1.22538 0.90480 0.91880 0.98631 1.48307 1.20762 1.43227 1.21489 1.16577 0.80769 0.81799 0.81935 1.90888 1.44717 1.32837 1.70544 1.20352 0.92605 1.03425 0.97683 1.20639 0.97575 1.00767 0.92909 1.20254 0.96678 1.04316 0.98933 1.21273 0.95819 1.03322 0.91089 1.42203 1.15825 1.37207 1.17487 0.74266 1.20676 1.00138 0.97065 0.89860 1.22331 0.95159 1.01181 0.96640 1.20453 0.96834 0.99888 0.91427 1.22533 0.95941 0.97034 0.83029 0.90108 1.21171 0.84348 0.87364 1.02289 0.93582 0.94585 0.96767 0.90773 0.89709 0.91687 0.90835 0.83665 0.90156 0.90981 0.90276 0.90703 0.91216 0.91034 0.92404 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.11 10.27 55.49 0.57 -27.54 16 2 C 0.00 -0.12 5.48 -17.43 -0.10 -0.21 16 3 Si 0.91 22.64 29.56 -169.99 -5.02 17.62 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.74 10.24 -15.06 -0.15 -6.89 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -15.56 3.38 -172.36 -0.58 -16.14 16 10 C 0.14 2.82 6.45 -3.39 -0.02 2.80 16 11 C -0.11 -1.78 4.35 -87.74 -0.38 -2.16 16 12 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 13 C -0.12 -1.45 6.35 -24.63 -0.16 -1.61 16 14 C 0.09 1.19 4.99 -2.57 -0.01 1.18 16 15 N -0.60 -10.95 2.99 -164.25 -0.49 -11.44 16 16 C 0.60 12.03 7.39 -12.86 -0.10 11.93 16 17 O -0.51 -12.35 16.69 5.19 0.09 -12.27 16 18 C -0.03 -0.47 6.83 -82.09 -0.56 -1.04 16 19 C -0.09 -1.48 10.67 -39.06 -0.42 -1.90 16 20 C -0.20 -2.60 6.89 -104.64 -0.72 -3.32 16 21 C 0.00 0.03 8.01 -81.36 -0.65 -0.62 16 22 N -0.53 -7.07 5.38 -5.42 -0.03 -7.09 16 23 H 0.41 4.68 5.22 -40.82 -0.21 4.46 16 24 C -0.04 -0.32 6.79 -26.72 -0.18 -0.50 16 25 C -0.12 -0.84 7.12 -25.24 -0.18 -1.02 16 26 C -0.05 -0.46 6.79 -26.80 -0.18 -0.64 16 27 C 0.12 2.33 3.56 -66.61 -0.24 2.10 16 28 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 29 C 0.17 4.46 4.91 -3.99 -0.02 4.44 16 30 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.01 0.28 6.52 -51.93 -0.34 -0.06 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 35 H 0.07 0.71 5.51 -51.93 -0.29 0.42 16 36 H 0.07 1.04 7.15 -51.92 -0.37 0.66 16 37 H 0.15 2.29 8.06 -52.48 -0.42 1.86 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 1.67 7.19 -51.93 -0.37 1.30 16 45 H 0.05 1.57 6.75 -51.93 -0.35 1.22 16 LS Contribution 348.44 15.07 5.25 5.25 Total: -1.00 -35.44 348.44 -10.84 -46.28 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.55 Total: 2.80 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -4.07 Total: 2.53 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: -0.53 Total: -62.22 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.27 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.44 -10.84 -46.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076446903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.805 kcal (2) G-P(sol) polarization free energy of solvation -35.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds