Wall clock time and date at job start Tue Mar 31 2020 11:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00268 * 2 1 4 4 H 1.48492 * 109.47208 * 275.00058 * 3 2 1 5 5 H 1.48499 * 109.46689 * 34.99971 * 3 2 1 6 6 H 1.48496 * 109.47123 * 154.99894 * 3 2 1 7 7 C 1.38810 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00448 * 174.87898 * 7 2 1 9 9 N 1.36942 * 120.00186 * 354.87705 * 7 2 1 10 10 C 1.46704 * 125.32558 * 185.00350 * 9 7 2 11 11 C 1.54039 * 106.82879 * 161.84346 * 10 9 7 12 12 H 1.09002 * 113.43357 * 262.66762 * 11 10 9 13 13 C 1.55123 * 108.25854 * 135.80994 * 11 10 9 14 14 C 1.54857 * 101.77444 * 286.08464 * 13 11 10 15 15 N 1.47398 * 104.81197 * 322.81717 * 14 13 11 16 16 C 1.34772 * 125.58665 * 204.60379 * 15 14 13 17 17 O 1.21698 * 119.99742 * 181.81537 * 16 15 14 18 18 C 1.46674 * 120.00508 * 1.81592 * 16 15 14 19 19 C 1.37749 * 126.23061 * 171.91031 * 18 16 15 20 20 C 1.40108 * 107.11001 * 179.97438 * 19 18 16 21 21 C 1.35320 * 107.92960 * 0.02562 * 20 19 18 22 22 N 1.36010 * 108.67912 * 359.97438 * 21 20 19 23 23 H 0.96996 * 125.63293 * 180.02562 * 22 21 20 24 24 C 1.51561 * 110.14247 * 180.02562 * 21 20 19 25 25 C 1.54403 * 105.00390 * 16.94447 * 24 21 20 26 26 C 1.51353 * 141.74226 * 179.97438 * 20 19 18 27 27 C 1.46732 * 108.82232 * 24.87218 * 15 14 13 28 28 H 1.08996 * 111.33014 * 235.86304 * 27 15 14 29 29 C 1.46637 * 125.32039 * 5.02867 * 9 7 2 30 30 H 0.97001 * 119.99484 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.98645 * 42.49867 * 10 9 7 32 32 H 1.09004 * 109.98624 * 281.18852 * 10 9 7 33 33 H 1.09002 * 110.96703 * 167.96511 * 13 11 10 34 34 H 1.09002 * 111.00473 * 44.22122 * 13 11 10 35 35 H 1.09003 * 110.36868 * 203.97989 * 14 13 11 36 36 H 1.09008 * 110.36549 * 81.65065 * 14 13 11 37 37 H 1.08004 * 126.44963 * 359.96442 * 19 18 16 38 38 H 1.09004 * 110.31504 * 258.08219 * 24 21 20 39 39 H 1.08997 * 110.36563 * 135.84113 * 24 21 20 40 40 H 1.08991 * 110.92429 * 216.00885 * 25 24 21 41 41 H 1.09004 * 110.91865 * 92.39868 * 25 24 21 42 42 H 1.09005 * 110.33502 * 44.15763 * 26 20 19 43 43 H 1.08994 * 110.43064 * 281.95930 * 26 20 19 44 44 H 1.09000 * 109.75153 * 300.90728 * 29 9 7 45 45 H 1.08996 * 109.75543 * 61.60923 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3921 2.1074 -1.3947 5 1 1.5046 2.6198 0.8031 6 1 3.5967 1.4119 0.5917 7 6 2.0102 -1.2022 -0.0005 8 1 3.0870 -1.2041 -0.0840 9 7 1.3296 -2.3858 0.1048 10 6 1.9467 -3.7117 0.2206 11 6 0.8639 -4.6613 0.7672 12 1 0.9245 -4.8131 1.8449 13 6 0.9191 -5.9809 -0.0463 14 6 0.2872 -5.5490 -1.3925 15 7 -0.7836 -4.6067 -1.0209 16 6 -1.8780 -4.3329 -1.7582 17 8 -2.6846 -3.5097 -1.3674 18 6 -2.0971 -5.0271 -3.0316 19 6 -3.2340 -4.9662 -3.8070 20 6 -3.0121 -5.7766 -4.9282 21 6 -1.7718 -6.3067 -4.8202 22 7 -1.2046 -5.8570 -3.6687 23 1 -0.3172 -6.0840 -3.3496 24 6 -1.4783 -7.1953 -6.0124 25 6 -2.5281 -6.8001 -7.0735 26 6 -3.6790 -6.2541 -6.2002 27 6 -0.4595 -4.0109 0.2802 28 1 -1.2646 -4.1654 0.9986 29 6 -0.1299 -2.5261 0.1191 30 1 -0.4849 0.8401 -0.0004 31 1 2.7897 -3.6714 0.9103 32 1 2.2820 -4.0533 -0.7587 33 1 0.3242 -6.7591 0.4319 34 1 1.9486 -6.3106 -0.1866 35 1 -0.1300 -6.4127 -1.9102 36 1 1.0293 -5.0526 -2.0179 37 1 -4.1283 -4.4004 -3.5912 38 1 -1.5921 -8.2444 -5.7396 39 1 -0.4720 -7.0075 -6.3869 40 1 -2.8520 -7.6707 -7.6437 41 1 -2.1400 -6.0259 -7.7354 42 1 -4.1747 -5.4235 -6.7029 43 1 -4.3960 -7.0449 -5.9801 44 1 -0.5461 -1.9615 0.9534 45 1 -0.5447 -2.1571 -0.8189 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076446903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:59 Heat of formation + Delta-G solvation = 42.777221 kcal Electronic energy + Delta-G solvation = -26975.285486 eV Core-core repulsion = 23379.824955 eV Total energy + Delta-G solvation = -3595.460531 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.80763 -41.42658 -39.26741 -37.03604 -36.51991 -34.03639 -32.57565 -32.11223 -30.92444 -28.98168 -28.25466 -27.77256 -26.67553 -24.75737 -23.29897 -22.25276 -21.83063 -21.05740 -20.42683 -20.14742 -18.91102 -18.28802 -17.66374 -16.96615 -16.71122 -16.55475 -16.05626 -15.83230 -15.60808 -14.85335 -14.82189 -14.60488 -14.27715 -14.23891 -13.96443 -13.85222 -13.55305 -13.54022 -13.05961 -13.01724 -12.85794 -12.70860 -12.53693 -12.30682 -12.16474 -11.96157 -11.93657 -11.90144 -11.72370 -11.68474 -11.49586 -11.19199 -10.75546 -9.96171 -9.73375 -8.94352 -8.92959 -7.87919 -5.26764 0.37617 1.39909 1.42853 1.52677 1.61226 1.72945 1.98325 2.27243 2.45234 3.25203 3.29783 3.43157 3.60194 3.64133 3.72002 3.84408 3.91862 4.07133 4.24972 4.26954 4.28787 4.31055 4.44870 4.47467 4.57587 4.64107 4.73476 4.83351 4.87120 4.92369 4.99650 5.02490 5.08689 5.10627 5.15366 5.19667 5.26969 5.34729 5.42720 5.45692 5.57223 5.72425 5.75859 5.94202 6.15047 6.40241 6.47580 7.01427 7.05020 7.74771 8.36902 9.20771 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016464 B = 0.003735 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.265718 B = 7494.352096 C = 8142.576968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.072 4.072 3 Si 0.981 3.019 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.258 1.258 7 C -0.244 4.244 8 H 0.091 0.909 9 N -0.624 5.624 10 C 0.134 3.866 11 C -0.095 4.095 12 H 0.124 0.876 13 C -0.101 4.101 14 C 0.080 3.920 15 N -0.604 5.604 16 C 0.590 3.410 17 O -0.578 6.578 18 C -0.062 4.062 19 C -0.110 4.110 20 C -0.218 4.218 21 C 0.023 3.977 22 N -0.516 5.516 23 H 0.424 0.576 24 C -0.037 4.037 25 C -0.108 4.108 26 C -0.050 4.050 27 C 0.119 3.881 28 H 0.076 0.924 29 C 0.194 3.806 30 H 0.243 0.757 31 H 0.049 0.951 32 H 0.030 0.970 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.130 0.870 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.007 0.993 45 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.674 -23.566 -11.139 26.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.264 4.264 3 Si 0.809 3.191 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.182 1.182 7 C -0.373 4.373 8 H 0.108 0.892 9 N -0.350 5.350 10 C 0.010 3.990 11 C -0.114 4.114 12 H 0.142 0.858 13 C -0.139 4.139 14 C -0.042 4.042 15 N -0.336 5.336 16 C 0.381 3.619 17 O -0.458 6.458 18 C -0.174 4.174 19 C -0.137 4.137 20 C -0.224 4.224 21 C -0.096 4.096 22 N -0.118 5.118 23 H 0.269 0.731 24 C -0.075 4.075 25 C -0.145 4.145 26 C -0.088 4.088 27 C 0.014 3.986 28 H 0.094 0.906 29 C 0.067 3.933 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.120 0.880 34 H 0.140 0.860 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.148 0.852 38 H 0.126 0.874 39 H 0.109 0.891 40 H 0.129 0.871 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.026 0.974 45 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges 0.356 -22.936 -10.860 25.379 hybrid contribution 0.140 2.102 0.615 2.194 sum 0.495 -20.834 -10.245 23.222 Atomic orbital electron populations 1.70313 1.06755 1.25084 1.57988 1.25823 0.96440 1.01655 1.02525 0.85029 0.78042 0.78923 0.77154 1.21704 1.22312 1.18248 1.19504 0.91495 0.83634 1.42694 0.89169 1.44539 1.01623 1.02504 1.86337 1.21612 0.95239 0.84230 0.97968 1.23172 0.91240 0.95364 1.01670 0.85796 1.22803 1.03761 0.95457 0.91891 1.22880 0.89174 0.91823 1.00303 1.48339 1.21222 1.43444 1.20610 1.17143 0.80572 0.81232 0.82916 1.90831 1.47036 1.35664 1.72278 1.19838 0.94205 1.05962 0.97367 1.20813 0.97176 1.01320 0.94400 1.20722 0.98153 1.03997 0.99510 1.22194 0.94938 1.01858 0.90602 1.42083 1.15726 1.36358 1.17659 0.73057 1.20955 1.01439 0.97384 0.87695 1.22392 0.93622 1.02377 0.96157 1.20613 0.97996 1.00298 0.89904 1.22281 0.98109 0.93769 0.84425 0.90567 1.20662 0.84450 0.90929 0.97240 0.94782 0.93241 0.95202 0.87985 0.85959 0.88434 0.91210 0.85223 0.87447 0.89058 0.87115 0.90611 0.91401 0.89701 0.97449 0.98819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.10 10.27 21.65 0.22 -62.88 16 2 C -0.07 -4.34 5.48 84.86 0.47 -3.87 16 3 Si 0.98 48.14 29.56 68.60 2.03 50.17 16 4 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 5 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.24 -14.18 10.24 84.03 0.86 -13.32 16 8 H 0.09 4.87 7.83 -2.91 -0.02 4.85 16 9 N -0.62 -33.15 3.38 -699.21 -2.36 -35.51 16 10 C 0.13 5.09 6.45 86.69 0.56 5.65 16 11 C -0.10 -2.86 4.35 -8.93 -0.04 -2.90 16 12 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 13 C -0.10 -1.94 6.35 31.96 0.20 -1.73 16 14 C 0.08 1.95 4.99 86.84 0.43 2.39 16 15 N -0.60 -22.44 2.99 -791.78 -2.37 -24.81 16 16 C 0.59 25.38 7.39 86.45 0.64 26.02 16 17 O -0.58 -30.86 16.69 -4.34 -0.07 -30.93 16 18 C -0.06 -2.16 6.83 40.34 0.28 -1.88 16 19 C -0.11 -3.72 10.67 22.61 0.24 -3.48 16 20 C -0.22 -5.62 6.89 -19.88 -0.14 -5.75 16 21 C 0.02 0.51 8.01 41.51 0.33 0.84 16 22 N -0.52 -13.09 5.38 -171.05 -0.92 -14.01 16 23 H 0.42 8.44 5.22 -92.71 -0.48 7.96 16 24 C -0.04 -0.42 6.79 30.60 0.21 -0.21 16 25 C -0.11 -1.11 7.12 31.56 0.22 -0.89 16 26 C -0.05 -0.84 6.79 30.55 0.21 -0.64 16 27 C 0.12 4.86 3.56 45.72 0.16 5.02 16 28 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 29 C 0.19 10.72 4.91 86.34 0.42 11.14 16 30 H 0.24 15.80 8.31 -92.71 -0.77 15.03 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.03 1.07 6.52 -2.38 -0.02 1.06 16 33 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.12 1.58 8.08 -2.39 -0.02 1.56 16 35 H 0.10 1.77 5.51 -2.39 -0.01 1.75 16 36 H 0.07 1.78 7.15 -2.38 -0.02 1.77 16 37 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 38 H 0.11 0.78 8.14 -2.38 -0.02 0.77 16 39 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 43 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.01 0.47 7.19 -2.39 -0.02 0.45 16 45 H -0.01 -0.43 6.75 -2.39 -0.02 -0.44 16 Total: -1.00 -88.72 348.44 2.11 -86.61 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.53 Total: 14.98 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: 5.06 Total: 16.37 kcal Atomic # 7 Polarization: -131.77 SS G_CDS: -5.43 Total: -137.20 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.07 Total: -30.93 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -88.72 2.11 -86.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076446903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.385 kcal (2) G-P(sol) polarization free energy of solvation -88.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds