Wall clock time and date at job start Tue Mar 31 2020 11:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48501 * 109.46922 * 90.00236 * 3 2 1 5 5 H 1.48496 * 109.47354 * 210.00432 * 3 2 1 6 6 H 1.48501 * 109.47428 * 330.00540 * 3 2 1 7 7 C 1.38812 * 119.99535 * 180.28285 * 2 1 3 8 8 H 1.07999 * 120.00285 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99632 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.53784 * 113.61474 * 254.13667 * 10 9 7 12 12 C 1.54046 * 86.98691 * 270.83555 * 11 10 9 13 13 C 1.53000 * 113.62223 * 220.01781 * 12 11 10 14 14 N 1.46498 * 109.47386 * 272.49850 * 13 12 11 15 15 C 1.34773 * 120.00106 * 179.97438 * 14 13 12 16 16 O 1.21280 * 120.00193 * 0.02562 * 15 14 13 17 17 C 1.50704 * 120.00040 * 180.02562 * 15 14 13 18 18 H 1.09001 * 110.25920 * 302.05158 * 17 15 14 19 19 C 1.54341 * 110.29523 * 180.02562 * 17 15 14 20 20 C 1.54360 * 102.38960 * 214.73109 * 19 17 15 21 21 C 1.51223 * 105.11852 * 26.29018 * 20 19 17 22 22 C 1.38745 * 130.69241 * 162.87455 * 21 20 19 23 23 C 1.38572 * 118.56089 * 179.97438 * 22 21 20 24 24 C 1.38233 * 118.98806 * 0.02562 * 23 22 21 25 25 N 1.31693 * 120.80017 * 359.96231 * 24 23 22 26 26 C 1.32298 * 122.03432 * 0.04658 * 25 24 23 27 27 C 1.53775 * 87.07928 * 334.56856 * 12 11 10 28 28 H 0.97005 * 119.99717 * 359.71788 * 1 2 3 29 29 H 0.97004 * 120.00593 * 359.97438 * 9 7 2 30 30 H 1.08999 * 112.85306 * 25.33530 * 10 9 7 31 31 H 1.09002 * 113.61479 * 25.43274 * 11 10 9 32 32 H 1.09001 * 113.61358 * 156.33672 * 11 10 9 33 33 H 1.09010 * 113.60977 * 89.11733 * 12 11 10 34 34 H 1.09005 * 109.46754 * 32.49653 * 13 12 11 35 35 H 1.08996 * 109.47211 * 152.49800 * 13 12 11 36 36 H 0.97001 * 120.00034 * 359.97438 * 14 13 12 37 37 H 1.09000 * 110.81806 * 332.95156 * 19 17 15 38 38 H 1.08997 * 110.82279 * 96.30374 * 19 17 15 39 39 H 1.09000 * 110.31466 * 145.20270 * 20 19 17 40 40 H 1.08998 * 110.31671 * 267.28310 * 20 19 17 41 41 H 1.08002 * 120.71629 * 359.95992 * 22 21 20 42 42 H 1.07994 * 120.51168 * 180.02562 * 23 22 21 43 43 H 1.07992 * 119.59777 * 179.97438 * 24 23 22 44 44 H 1.09002 * 113.61702 * 270.87707 * 27 12 11 45 45 H 1.08998 * 113.69484 * 139.98591 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4401 -0.7001 6 1 1.4478 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0059 8 1 1.4702 -2.1375 -0.0101 9 7 3.3796 -1.2022 -0.0065 10 6 4.1120 -2.4709 -0.0122 11 6 4.7541 -2.8177 1.3415 12 6 5.9934 -2.0389 0.8612 13 6 7.3191 -2.6994 1.2445 14 7 7.7243 -2.2444 2.5768 15 6 8.8690 -2.6982 3.1246 16 8 9.5639 -3.4829 2.5145 17 6 9.2855 -2.2306 4.4954 18 1 9.3769 -1.1446 4.5121 19 6 10.6225 -2.8862 4.9013 20 6 10.4490 -3.0773 6.4232 21 6 8.9558 -3.1776 6.6404 22 6 8.2290 -3.6558 7.7212 23 6 6.8452 -3.6294 7.6529 24 6 6.2402 -3.1301 6.5147 25 7 6.9620 -2.6842 5.5075 26 6 8.2847 -2.6926 5.5343 27 6 5.5392 -2.3559 -0.5733 28 1 -0.4850 0.8401 0.0041 29 1 3.8647 -0.3622 -0.0031 30 1 3.5373 -3.2896 -0.4452 31 1 4.2516 -2.3593 2.1933 32 1 4.9347 -3.8838 1.4788 33 1 5.9627 -0.9766 1.1042 34 1 7.1965 -3.7825 1.2521 35 1 8.0847 -2.4255 0.5186 36 1 7.1687 -1.6166 3.0646 37 1 10.7502 -3.8467 4.4023 38 1 11.4605 -2.2239 4.6839 39 1 10.9410 -3.9942 6.7479 40 1 10.8543 -2.2203 6.9609 41 1 8.7309 -4.0405 8.5968 42 1 6.2485 -3.9933 8.4761 43 1 5.1624 -3.1053 6.4507 44 1 5.9340 -3.2960 -0.9587 45 1 5.6697 -1.5258 -1.2677 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091202433.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:39 Heat of formation + Delta-G solvation = 28.938912 kcal Electronic energy + Delta-G solvation = -25707.599678 eV Core-core repulsion = 22111.539073 eV Total energy + Delta-G solvation = -3596.060605 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.30027 -39.57173 -38.57837 -36.32292 -34.66007 -33.28938 -32.89934 -30.68356 -29.70173 -29.06463 -27.05569 -25.11484 -23.81778 -23.57466 -22.57915 -21.87205 -21.39701 -20.13658 -18.57829 -17.66090 -17.45641 -17.07728 -16.62404 -15.98778 -15.50488 -15.21216 -14.91409 -14.67891 -14.32537 -13.89719 -13.79857 -13.72665 -13.49474 -13.35091 -12.99344 -12.77898 -12.50475 -12.26130 -12.02385 -11.98272 -11.90409 -11.48249 -11.39108 -11.31237 -10.90476 -10.47846 -10.35191 -10.15296 -10.02576 -9.84903 -9.63768 -9.56220 -9.47817 -9.02081 -8.95172 -8.87478 -7.28254 -5.78770 -3.14468 0.75414 0.97229 2.54432 3.17114 3.35932 3.38602 3.43892 3.50377 3.62038 3.98697 4.39647 4.50328 4.57116 4.61292 4.64145 4.83667 4.93637 4.98736 5.00759 5.03536 5.13841 5.17143 5.24675 5.40794 5.41703 5.46970 5.49496 5.58230 5.61191 5.79081 5.82228 5.86289 5.89044 5.91989 5.97702 6.17773 6.27826 6.37171 6.44788 6.55088 6.70262 6.80267 6.94750 7.56402 7.69789 7.99671 8.21760 8.41159 9.19187 9.91564 10.11171 11.39485 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015682 B = 0.003067 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.038868 B = 9127.810181 C =10028.505322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.290 1.290 7 C -0.244 4.244 8 H 0.092 0.908 9 N -0.730 5.730 10 C 0.172 3.828 11 C -0.162 4.162 12 C -0.121 4.121 13 C 0.132 3.868 14 N -0.710 5.710 15 C 0.523 3.477 16 O -0.547 6.547 17 C -0.061 4.061 18 H 0.119 0.881 19 C -0.103 4.103 20 C -0.079 4.079 21 C -0.144 4.144 22 C -0.066 4.066 23 C -0.170 4.170 24 C 0.109 3.891 25 N -0.469 5.469 26 C 0.121 3.879 27 C -0.148 4.148 28 H 0.260 0.740 29 H 0.362 0.638 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.408 0.592 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.133 0.867 42 H 0.139 0.861 43 H 0.162 0.838 44 H 0.081 0.919 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.106 -6.197 15.844 27.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.203 1.203 6 H -0.217 1.217 7 C -0.374 4.374 8 H 0.110 0.890 9 N -0.371 5.371 10 C 0.060 3.940 11 C -0.203 4.203 12 C -0.140 4.140 13 C 0.008 3.992 14 N -0.360 5.360 15 C 0.308 3.692 16 O -0.425 6.425 17 C -0.083 4.083 18 H 0.136 0.864 19 C -0.141 4.141 20 C -0.117 4.117 21 C -0.146 4.146 22 C -0.092 4.092 23 C -0.189 4.189 24 C -0.049 4.049 25 N -0.177 5.177 26 C -0.017 4.017 27 C -0.188 4.188 28 H 0.070 0.930 29 H 0.195 0.805 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.243 0.757 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.151 0.849 42 H 0.156 0.844 43 H 0.179 0.821 44 H 0.099 0.901 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 21.861 -6.477 14.617 27.083 hybrid contribution 0.511 1.280 1.191 1.822 sum 22.372 -5.197 15.807 27.882 Atomic orbital electron populations 1.69704 1.05092 1.25843 1.57421 1.24673 0.95245 0.97188 1.01988 0.86563 0.79247 0.85036 0.77788 1.21053 1.20316 1.21684 1.19114 0.80440 0.94822 1.43041 0.89048 1.42511 1.03928 1.01627 1.88987 1.21015 0.90026 0.89763 0.93172 1.23853 0.96284 0.98635 1.01528 1.22770 0.92915 1.00018 0.98306 1.21449 0.95950 0.99000 0.82752 1.45991 1.23306 1.47586 1.19162 1.20101 0.81158 0.81071 0.86857 1.90676 1.53641 1.34924 1.63262 1.20893 0.93976 1.02627 0.90802 0.86375 1.22290 0.94496 1.03018 0.94319 1.21005 0.90832 1.03025 0.96792 1.21408 0.97622 1.00119 0.95444 1.21068 0.93755 0.96776 0.97577 1.22140 0.95107 1.01557 1.00141 1.22737 1.00299 0.93629 0.88228 1.66825 1.06310 1.15181 1.29356 1.21351 0.89959 0.96124 0.94258 1.23439 0.98826 1.01564 0.94955 0.93025 0.80531 0.91281 0.91181 0.91142 0.89305 0.91628 0.91889 0.75684 0.88691 0.89395 0.89982 0.89619 0.84916 0.84355 0.82079 0.90062 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.24 13.97 55.49 0.78 -28.46 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 21.99 27.74 -169.99 -4.71 17.27 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.24 -6.87 10.45 -15.06 -0.16 -7.02 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 9 N -0.73 -17.13 5.11 -52.64 -0.27 -17.40 16 10 C 0.17 3.28 4.55 -67.12 -0.31 2.97 16 11 C -0.16 -2.70 7.45 -25.78 -0.19 -2.89 16 12 C -0.12 -1.78 3.64 -89.67 -0.33 -2.11 16 13 C 0.13 1.80 5.51 -4.04 -0.02 1.78 16 14 N -0.71 -9.25 5.38 -60.29 -0.32 -9.58 16 15 C 0.52 6.96 7.15 -10.99 -0.08 6.89 16 16 O -0.55 -8.89 15.49 5.56 0.09 -8.81 16 17 C -0.06 -0.62 3.26 -91.84 -0.30 -0.92 16 18 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 19 C -0.10 -0.85 6.35 -25.32 -0.16 -1.01 16 20 C -0.08 -0.53 6.77 -26.91 -0.18 -0.71 16 21 C -0.14 -1.31 6.16 -104.20 -0.64 -1.95 16 22 C -0.07 -0.52 10.17 -39.27 -0.40 -0.92 16 23 C -0.17 -1.36 10.12 -39.46 -0.40 -1.76 16 24 C 0.11 1.09 11.18 -17.61 -0.20 0.90 16 25 N -0.47 -5.70 9.88 -9.19 -0.09 -5.79 16 26 C 0.12 1.34 6.60 -82.04 -0.54 0.80 16 27 C -0.15 -2.29 7.38 -25.92 -0.19 -2.48 16 28 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 29 H 0.36 8.33 5.76 -40.82 -0.24 8.09 16 30 H 0.07 1.36 8.11 -51.93 -0.42 0.93 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.07 1.09 7.90 -51.93 -0.41 0.68 16 33 H 0.09 1.36 8.14 -51.92 -0.42 0.94 16 34 H 0.07 0.95 7.85 -51.93 -0.41 0.54 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.41 5.08 8.16 -40.82 -0.33 4.75 16 37 H 0.09 0.96 7.02 -51.93 -0.36 0.60 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -34.17 369.12 -10.00 -44.17 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -6.83 Total: 11.43 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -4.19 Total: -8.40 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: 0.09 Total: -61.23 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.81 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.27 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.17 -10.00 -44.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091202433.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.105 kcal (2) G-P(sol) polarization free energy of solvation -34.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds