Wall clock time and date at job start Tue Mar 31 2020 11:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48501 * 109.46922 * 90.00236 * 3 2 1 5 5 H 1.48496 * 109.47354 * 210.00432 * 3 2 1 6 6 H 1.48501 * 109.47428 * 330.00540 * 3 2 1 7 7 C 1.38812 * 119.99535 * 180.28285 * 2 1 3 8 8 H 1.07999 * 120.00285 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99632 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.53784 * 113.61474 * 254.13667 * 10 9 7 12 12 C 1.54046 * 86.98691 * 270.83555 * 11 10 9 13 13 C 1.53000 * 113.62223 * 220.01781 * 12 11 10 14 14 N 1.46498 * 109.47386 * 272.49850 * 13 12 11 15 15 C 1.34773 * 120.00106 * 179.97438 * 14 13 12 16 16 O 1.21280 * 120.00193 * 0.02562 * 15 14 13 17 17 C 1.50704 * 120.00040 * 180.02562 * 15 14 13 18 18 H 1.09001 * 110.25920 * 302.05158 * 17 15 14 19 19 C 1.54341 * 110.29523 * 180.02562 * 17 15 14 20 20 C 1.54360 * 102.38960 * 214.73109 * 19 17 15 21 21 C 1.51223 * 105.11852 * 26.29018 * 20 19 17 22 22 C 1.38745 * 130.69241 * 162.87455 * 21 20 19 23 23 C 1.38572 * 118.56089 * 179.97438 * 22 21 20 24 24 C 1.38233 * 118.98806 * 0.02562 * 23 22 21 25 25 N 1.31693 * 120.80017 * 359.96231 * 24 23 22 26 26 C 1.32298 * 122.03432 * 0.04658 * 25 24 23 27 27 C 1.53775 * 87.07928 * 334.56856 * 12 11 10 28 28 H 0.97005 * 119.99717 * 359.71788 * 1 2 3 29 29 H 0.97004 * 120.00593 * 359.97438 * 9 7 2 30 30 H 1.08999 * 112.85306 * 25.33530 * 10 9 7 31 31 H 1.09002 * 113.61479 * 25.43274 * 11 10 9 32 32 H 1.09001 * 113.61358 * 156.33672 * 11 10 9 33 33 H 1.09010 * 113.60977 * 89.11733 * 12 11 10 34 34 H 1.09005 * 109.46754 * 32.49653 * 13 12 11 35 35 H 1.08996 * 109.47211 * 152.49800 * 13 12 11 36 36 H 0.97001 * 120.00034 * 359.97438 * 14 13 12 37 37 H 1.09000 * 110.81806 * 332.95156 * 19 17 15 38 38 H 1.08997 * 110.82279 * 96.30374 * 19 17 15 39 39 H 1.09000 * 110.31466 * 145.20270 * 20 19 17 40 40 H 1.08998 * 110.31671 * 267.28310 * 20 19 17 41 41 H 1.08002 * 120.71629 * 359.95992 * 22 21 20 42 42 H 1.07994 * 120.51168 * 180.02562 * 23 22 21 43 43 H 1.07992 * 119.59777 * 179.97438 * 24 23 22 44 44 H 1.09002 * 113.61702 * 270.87707 * 27 12 11 45 45 H 1.08998 * 113.69484 * 139.98591 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4401 -0.7001 6 1 1.4478 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0059 8 1 1.4702 -2.1375 -0.0101 9 7 3.3796 -1.2022 -0.0065 10 6 4.1120 -2.4709 -0.0122 11 6 4.7541 -2.8177 1.3415 12 6 5.9934 -2.0389 0.8612 13 6 7.3191 -2.6994 1.2445 14 7 7.7243 -2.2444 2.5768 15 6 8.8690 -2.6982 3.1246 16 8 9.5639 -3.4829 2.5145 17 6 9.2855 -2.2306 4.4954 18 1 9.3769 -1.1446 4.5121 19 6 10.6225 -2.8862 4.9013 20 6 10.4490 -3.0773 6.4232 21 6 8.9558 -3.1776 6.6404 22 6 8.2290 -3.6558 7.7212 23 6 6.8452 -3.6294 7.6529 24 6 6.2402 -3.1301 6.5147 25 7 6.9620 -2.6842 5.5075 26 6 8.2847 -2.6926 5.5343 27 6 5.5392 -2.3559 -0.5733 28 1 -0.4850 0.8401 0.0041 29 1 3.8647 -0.3622 -0.0031 30 1 3.5373 -3.2896 -0.4452 31 1 4.2516 -2.3593 2.1933 32 1 4.9347 -3.8838 1.4788 33 1 5.9627 -0.9766 1.1042 34 1 7.1965 -3.7825 1.2521 35 1 8.0847 -2.4255 0.5186 36 1 7.1687 -1.6166 3.0646 37 1 10.7502 -3.8467 4.4023 38 1 11.4605 -2.2239 4.6839 39 1 10.9410 -3.9942 6.7479 40 1 10.8543 -2.2203 6.9609 41 1 8.7309 -4.0405 8.5968 42 1 6.2485 -3.9933 8.4761 43 1 5.1624 -3.1053 6.4507 44 1 5.9340 -3.2960 -0.9587 45 1 5.6697 -1.5258 -1.2677 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091202433.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:38 Heat of formation + Delta-G solvation = 6.153983 kcal Electronic energy + Delta-G solvation = -25708.587707 eV Core-core repulsion = 22111.539073 eV Total energy + Delta-G solvation = -3597.048634 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.03396 -40.65629 -39.86367 -37.04184 -36.03263 -34.97824 -33.67099 -32.64827 -30.42440 -29.91534 -28.19065 -26.47655 -25.41816 -24.46636 -23.63660 -22.95566 -22.24871 -21.09807 -20.10132 -19.57246 -18.44956 -17.77182 -17.39184 -17.06078 -16.64517 -16.32256 -16.14131 -15.91594 -15.63946 -15.13364 -14.88256 -14.66755 -14.58781 -14.49704 -14.14344 -14.04973 -13.68151 -13.35969 -13.12879 -13.03311 -12.94087 -12.66713 -12.61341 -12.54676 -12.25372 -12.00073 -11.89926 -11.67130 -11.55573 -11.13807 -10.94433 -10.83149 -10.64925 -10.27049 -10.03059 -9.69920 -9.30499 -8.03424 -5.37025 0.08409 0.33092 1.36902 1.40488 1.47742 1.55219 2.21595 2.47473 2.80072 2.93238 3.26939 3.34516 3.49739 3.65099 3.73061 3.81906 3.88932 3.98443 4.00099 4.08363 4.19283 4.25234 4.29763 4.37186 4.44801 4.58033 4.64105 4.68682 4.75080 4.82145 4.90054 4.94448 4.98299 5.06207 5.07055 5.20300 5.23554 5.27435 5.28955 5.32131 5.50430 5.54236 5.75159 5.79848 6.21969 6.53409 6.99338 7.06901 7.20015 7.83574 8.02671 9.18193 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015682 B = 0.003067 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.038868 B = 9127.810181 C =10028.505322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.955 3.045 4 H -0.278 1.278 5 H -0.251 1.251 6 H -0.296 1.296 7 C -0.232 4.232 8 H 0.056 0.944 9 N -0.733 5.733 10 C 0.147 3.853 11 C -0.152 4.152 12 C -0.104 4.104 13 C 0.139 3.861 14 N -0.709 5.709 15 C 0.520 3.480 16 O -0.581 6.581 17 C -0.058 4.058 18 H 0.137 0.863 19 C -0.101 4.101 20 C -0.071 4.071 21 C -0.148 4.148 22 C -0.069 4.069 23 C -0.163 4.163 24 C 0.082 3.918 25 N -0.501 5.501 26 C 0.092 3.908 27 C -0.130 4.130 28 H 0.258 0.742 29 H 0.367 0.633 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.411 0.589 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.164 0.836 42 H 0.166 0.834 43 H 0.166 0.834 44 H 0.106 0.894 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.294 -5.702 17.345 31.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.782 3.218 4 H -0.204 1.204 5 H -0.175 1.175 6 H -0.222 1.222 7 C -0.363 4.363 8 H 0.074 0.926 9 N -0.375 5.375 10 C 0.038 3.962 11 C -0.192 4.192 12 C -0.123 4.123 13 C 0.016 3.984 14 N -0.359 5.359 15 C 0.306 3.694 16 O -0.461 6.461 17 C -0.080 4.080 18 H 0.154 0.846 19 C -0.139 4.139 20 C -0.108 4.108 21 C -0.150 4.150 22 C -0.095 4.095 23 C -0.183 4.183 24 C -0.075 4.075 25 N -0.210 5.210 26 C -0.046 4.046 27 C -0.169 4.169 28 H 0.067 0.933 29 H 0.200 0.800 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.247 0.753 37 H 0.090 0.910 38 H 0.127 0.873 39 H 0.115 0.885 40 H 0.127 0.873 41 H 0.182 0.818 42 H 0.183 0.817 43 H 0.183 0.817 44 H 0.124 0.876 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 25.101 -6.012 16.128 30.435 hybrid contribution -0.537 0.965 0.756 1.338 sum 24.564 -5.047 16.884 30.231 Atomic orbital electron populations 1.69890 1.07168 1.26713 1.59697 1.25510 0.96130 1.01282 1.02643 0.85405 0.78691 0.79546 0.78132 1.20375 1.17523 1.22237 1.19061 0.82558 0.93483 1.41224 0.92597 1.42429 1.02290 1.03447 1.89339 1.21327 0.91629 0.87814 0.95450 1.23697 0.96753 0.99685 0.99076 1.22601 0.92541 0.99663 0.97452 1.21292 0.95326 0.98382 0.83411 1.46009 1.23444 1.47508 1.18925 1.20684 0.80552 0.80315 0.87803 1.90654 1.54605 1.36421 1.64451 1.20999 0.94707 1.03797 0.88500 0.84574 1.22306 0.94151 1.02115 0.95293 1.21048 0.89395 1.04729 0.95672 1.21768 0.98896 0.99198 0.95111 1.21480 0.93749 0.96028 0.98235 1.22449 0.95714 1.00173 0.99947 1.23004 1.00769 0.94698 0.89012 1.66741 1.07244 1.16355 1.30636 1.21559 0.89911 0.97633 0.95455 1.23329 0.95273 1.03026 0.95321 0.93309 0.79976 0.92523 0.93228 0.89780 0.89377 0.92330 0.91247 0.75336 0.90983 0.87300 0.88526 0.87319 0.81843 0.81656 0.81658 0.87560 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.57 13.97 21.65 0.30 -63.27 16 2 C -0.06 -3.82 5.50 84.86 0.47 -3.35 16 3 Si 0.96 45.49 27.74 68.60 1.90 47.39 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.25 -10.72 6.52 99.48 0.65 -10.07 16 6 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 7 C -0.23 -13.36 10.45 84.03 0.88 -12.48 16 8 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 9 N -0.73 -34.19 5.11 -320.44 -1.64 -35.83 16 10 C 0.15 5.55 4.55 45.52 0.21 5.76 16 11 C -0.15 -4.96 7.45 31.21 0.23 -4.73 16 12 C -0.10 -2.88 3.64 -10.18 -0.04 -2.91 16 13 C 0.14 3.59 5.51 86.38 0.48 4.07 16 14 N -0.71 -17.80 5.38 -463.06 -2.49 -20.29 16 15 C 0.52 13.43 7.15 87.66 0.63 14.06 16 16 O -0.58 -18.63 15.49 -3.03 -0.05 -18.68 16 17 C -0.06 -1.10 3.26 -11.59 -0.04 -1.14 16 18 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 19 C -0.10 -1.46 6.35 31.51 0.20 -1.26 16 20 C -0.07 -0.74 6.77 30.48 0.21 -0.54 16 21 C -0.15 -2.37 6.16 -19.59 -0.12 -2.49 16 22 C -0.07 -0.90 10.17 22.47 0.23 -0.68 16 23 C -0.16 -2.30 10.12 22.35 0.23 -2.08 16 24 C 0.08 1.62 11.18 84.71 0.95 2.57 16 25 N -0.50 -12.03 9.88 -182.98 -1.81 -13.84 16 26 C 0.09 1.94 6.60 42.72 0.28 2.22 16 27 C -0.13 -3.74 7.38 31.12 0.23 -3.51 16 28 H 0.26 15.84 8.31 -92.70 -0.77 15.07 16 29 H 0.37 16.28 5.76 -92.71 -0.53 15.75 16 30 H 0.06 2.26 8.11 -2.39 -0.02 2.24 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.08 2.52 7.90 -2.39 -0.02 2.50 16 33 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 34 H 0.06 1.61 7.85 -2.38 -0.02 1.59 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.41 9.91 8.16 -92.71 -0.76 9.16 16 37 H 0.07 1.40 7.02 -2.39 -0.02 1.38 16 38 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 43 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 44 H 0.11 2.56 8.10 -2.39 -0.02 2.54 16 45 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -76.40 369.12 0.89 -75.51 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: -0.34 Total: 35.49 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: 5.01 Total: -6.48 kcal Atomic # 7 Polarization: -127.60 SS G_CDS: -5.64 Total: -133.23 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.05 Total: -18.68 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.90 Total: 47.39 kcal Total: -76.40 0.89 -75.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091202433.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.659 kcal (2) G-P(sol) polarization free energy of solvation -76.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds