Wall clock time and date at job start Tue Mar 31 2020 11:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99493 * 2 1 4 4 H 1.48492 * 109.46972 * 269.99521 * 3 2 1 5 5 H 1.48495 * 109.47461 * 30.00110 * 3 2 1 6 6 H 1.48502 * 109.46565 * 149.99737 * 3 2 1 7 7 C 1.37877 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99900 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99566 * 179.97438 * 7 2 1 10 10 N 1.46904 * 109.46755 * 180.02562 * 9 7 2 11 11 C 1.46955 * 110.99926 * 170.00050 * 10 9 7 12 12 C 1.53043 * 109.36511 * 183.18604 * 11 10 9 13 13 N 1.46965 * 109.36679 * 301.60079 * 12 11 10 14 14 C 1.46895 * 111.00229 * 183.18710 * 13 12 11 15 15 C 1.50697 * 109.47364 * 164.18241 * 14 13 12 16 16 C 1.34215 * 126.50156 * 105.29602 * 15 14 13 17 17 N 1.36928 * 109.88318 * 179.97438 * 16 15 14 18 18 H 0.97008 * 125.06482 * 179.97438 * 17 16 15 19 19 C 1.37687 * 109.86889 * 359.97438 * 17 16 15 20 20 C 1.39227 * 133.37842 * 180.02562 * 19 17 16 21 21 C 1.37720 * 120.02491 * 179.97438 * 20 19 17 22 22 C 1.38787 * 120.71763 * 0.03093 * 21 20 19 23 23 C 1.38126 * 120.32061 * 0.26657 * 22 21 20 24 24 O 1.35880 * 120.22242 * 179.72828 * 23 22 21 25 25 C 1.40060 * 119.55096 * 359.44219 * 23 22 21 26 26 C 1.46951 * 110.87707 * 59.31827 * 13 12 11 27 27 C 1.46954 * 110.99771 * 293.79899 * 10 9 7 28 28 H 0.96998 * 119.99974 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47159 * 60.00695 * 9 7 2 30 30 H 1.08996 * 109.47162 * 300.00094 * 9 7 2 31 31 H 1.09004 * 109.48915 * 63.22315 * 11 10 9 32 32 H 1.08997 * 109.49030 * 303.15875 * 11 10 9 33 33 H 1.09001 * 109.49383 * 181.63604 * 12 11 10 34 34 H 1.09001 * 109.49267 * 61.56724 * 12 11 10 35 35 H 1.09004 * 109.47458 * 44.18285 * 14 13 12 36 36 H 1.09004 * 109.47364 * 284.18555 * 14 13 12 37 37 H 1.07991 * 125.05721 * 359.95573 * 16 15 14 38 38 H 1.08001 * 119.98523 * 359.97438 * 20 19 17 39 39 H 1.07995 * 119.63461 * 180.02562 * 21 20 19 40 40 H 1.08010 * 119.84066 * 179.97438 * 22 21 20 41 41 H 0.96699 * 114.00111 * 93.88081 * 24 23 22 42 42 H 1.09001 * 109.49399 * 60.65098 * 26 13 12 43 43 H 1.09007 * 109.48757 * 180.71012 * 26 13 12 44 44 H 1.08998 * 109.49454 * 296.78120 * 27 10 9 45 45 H 1.08997 * 109.49075 * 56.82526 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0013 -2.5789 0.0001 11 6 5.4506 -2.6251 -0.2387 12 6 5.9069 -4.0842 -0.3101 13 7 5.5610 -4.7651 0.9455 14 6 6.0507 -6.1500 0.9456 15 6 6.0326 -6.6891 2.3528 16 6 5.1532 -7.5669 2.8602 17 7 5.4536 -7.8217 4.1716 18 1 4.9594 -8.4239 4.7497 19 6 6.5615 -7.0958 4.5475 20 6 7.2731 -6.9851 5.7391 21 6 8.3698 -6.1554 5.8123 22 6 8.7790 -5.4220 4.7074 23 6 8.0856 -5.5105 3.5160 24 8 8.4846 -4.7874 2.4371 25 6 6.9720 -6.3552 3.4260 26 6 4.1117 -4.7188 1.1842 27 6 3.6554 -3.2597 1.2556 28 1 -0.4850 0.8400 -0.0004 29 1 3.8753 -0.6796 0.8895 30 1 3.8746 -0.6807 -0.8905 31 1 5.9697 -2.1213 0.5767 32 1 5.6802 -2.1257 -1.1800 33 1 6.9862 -4.1209 -0.4582 34 1 5.4083 -4.5809 -1.1424 35 1 7.0699 -6.1751 0.5600 36 1 5.4079 -6.7628 0.3135 37 1 4.3309 -8.0065 2.3154 38 1 6.9647 -7.5501 6.6064 39 1 8.9174 -6.0746 6.7397 40 1 9.6410 -4.7753 4.7807 41 1 9.0752 -5.2659 1.8394 42 1 3.5925 -5.2227 0.3689 43 1 3.8821 -5.2183 2.1255 44 1 4.1540 -2.7631 2.0880 45 1 2.5762 -3.2227 1.4040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140233822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:18 Heat of formation + Delta-G solvation = 38.339900 kcal Electronic energy + Delta-G solvation = -26396.755663 eV Core-core repulsion = 22801.102715 eV Total energy + Delta-G solvation = -3595.652948 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.42841 -38.62435 -38.13754 -36.01820 -35.09891 -32.54705 -31.58862 -30.32912 -29.41374 -29.27800 -28.06879 -25.88522 -23.45707 -23.00376 -22.81191 -22.03303 -20.94855 -19.72840 -19.08281 -18.43936 -17.05843 -16.73174 -16.23732 -15.67817 -15.65254 -14.79393 -14.75361 -14.50865 -14.30850 -14.20303 -14.15154 -13.97081 -13.41330 -13.32052 -12.85749 -12.55401 -12.30749 -12.09322 -11.99537 -11.77896 -11.47686 -11.34195 -11.20409 -10.87123 -10.68814 -10.57652 -10.44234 -10.29193 -9.97377 -9.76013 -9.47300 -9.19146 -8.51427 -8.36751 -7.94610 -7.61709 -7.24659 -6.00372 -3.97015 0.95226 1.47887 2.52060 2.97933 3.33186 3.40273 3.44342 3.64438 4.22359 4.36434 4.47517 4.63499 4.79101 4.90080 4.93432 5.04425 5.18743 5.26368 5.32591 5.42479 5.51987 5.61511 5.65053 5.67841 5.73320 5.84138 5.95320 5.97430 6.02083 6.14332 6.26386 6.34701 6.42615 6.46402 6.48284 6.62426 6.65852 6.75545 6.92661 6.94413 7.07763 7.35398 7.43602 7.46584 7.67630 7.75621 8.01365 8.15950 8.72931 9.07814 9.62131 11.12791 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018317 B = 0.003160 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.258316 B = 8857.843170 C = 9018.338996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.507 4.507 8 H 0.080 0.920 9 C 0.162 3.838 10 N -0.529 5.529 11 C 0.055 3.945 12 C 0.066 3.934 13 N -0.524 5.524 14 C 0.133 3.867 15 C -0.141 4.141 16 C 0.046 3.954 17 N -0.595 5.595 18 H 0.415 0.585 19 C 0.109 3.891 20 C -0.147 4.147 21 C -0.084 4.084 22 C -0.183 4.183 23 C 0.169 3.831 24 O -0.480 6.480 25 C -0.116 4.116 26 C 0.062 3.938 27 C 0.069 3.931 28 H 0.263 0.737 29 H -0.011 1.011 30 H 0.023 0.977 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.169 0.831 38 H 0.118 0.882 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.382 0.618 42 H 0.036 0.964 43 H 0.068 0.932 44 H 0.027 0.973 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.797 -18.635 8.361 27.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.545 4.545 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.254 5.254 11 C -0.074 4.074 12 C -0.062 4.062 13 N -0.249 5.249 14 C 0.005 3.995 15 C -0.148 4.148 16 C -0.080 4.080 17 N -0.198 5.198 18 H 0.252 0.748 19 C 0.001 3.999 20 C -0.168 4.168 21 C -0.103 4.103 22 C -0.203 4.203 23 C 0.124 3.876 24 O -0.289 6.289 25 C -0.122 4.122 26 C -0.066 4.066 27 C -0.060 4.060 28 H 0.073 0.927 29 H 0.006 0.994 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.186 0.814 38 H 0.136 0.864 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.237 0.763 42 H 0.054 0.946 43 H 0.086 0.914 44 H 0.046 0.954 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 17.195 -18.135 8.629 26.439 hybrid contribution 0.287 0.379 0.122 0.491 sum 17.482 -17.756 8.751 26.410 Atomic orbital electron populations 1.69900 1.06115 1.26760 1.51405 1.24899 0.94732 0.98853 0.94897 0.86861 0.80392 0.83996 0.78550 1.20180 1.21258 1.19204 1.21044 0.88815 0.94636 1.49990 0.90238 1.20146 0.96938 0.84322 0.95020 1.62117 1.10564 1.18888 1.33837 1.22092 0.90071 0.95020 1.00242 1.22086 0.99339 0.94851 0.89911 1.62076 1.14390 1.13968 1.34459 1.20239 0.99923 0.88757 0.90601 1.20085 0.97399 1.01421 0.95925 1.21660 1.00797 1.01427 0.84112 1.41716 1.26118 1.40773 1.11236 0.74803 1.18108 0.90339 0.96211 0.95206 1.19966 0.97841 1.03900 0.95073 1.20598 0.95946 0.95719 0.98059 1.21103 1.02201 1.03553 0.93399 1.17864 0.91798 0.90121 0.87850 1.84910 1.68431 1.40289 1.35267 1.19307 0.98701 1.00214 0.93960 1.22191 0.86699 0.97811 0.99924 1.21988 1.01397 0.91941 0.90642 0.92747 0.99365 0.95901 0.95007 0.91249 0.91156 0.94633 0.90744 0.94540 0.81423 0.86359 0.85599 0.85621 0.76286 0.94616 0.91365 0.95430 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 22.12 27.47 -169.99 -4.67 17.45 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.61 6.54 56.52 0.37 -6.24 16 7 C -0.51 -14.77 9.03 -34.44 -0.31 -15.08 16 8 H 0.08 2.51 7.38 -52.49 -0.39 2.12 16 9 C 0.16 4.12 3.79 -4.97 -0.02 4.10 16 10 N -0.53 -11.72 4.70 -235.92 -1.11 -12.83 16 11 C 0.05 1.01 5.61 -3.77 -0.02 0.99 16 12 C 0.07 1.01 5.58 -3.77 -0.02 0.99 16 13 N -0.52 -8.01 4.66 -235.91 -1.10 -9.11 16 14 C 0.13 1.62 5.24 -4.98 -0.03 1.60 16 15 C -0.14 -1.71 5.04 -102.72 -0.52 -2.23 16 16 C 0.05 0.46 11.38 -16.69 -0.19 0.27 16 17 N -0.60 -5.46 6.07 -10.65 -0.06 -5.52 16 18 H 0.42 2.47 8.96 -40.82 -0.37 2.10 16 19 C 0.11 1.24 7.27 -84.01 -0.61 0.63 16 20 C -0.15 -1.45 10.07 -39.40 -0.40 -1.84 16 21 C -0.08 -0.81 10.01 -39.57 -0.40 -1.20 16 22 C -0.18 -2.01 9.97 -39.42 -0.39 -2.40 16 23 C 0.17 2.13 6.74 -38.94 -0.26 1.86 16 24 O -0.48 -5.79 13.23 -19.36 -0.26 -6.05 16 25 C -0.12 -1.50 6.30 -105.03 -0.66 -2.16 16 26 C 0.06 1.04 5.44 -3.77 -0.02 1.02 16 27 C 0.07 1.43 5.43 -3.77 -0.02 1.41 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H -0.01 -0.30 7.18 -51.93 -0.37 -0.67 16 30 H 0.02 0.58 7.45 -51.93 -0.39 0.19 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 33 H 0.07 0.92 8.02 -51.93 -0.42 0.50 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.81 7.92 -51.93 -0.41 0.40 16 36 H 0.04 0.42 8.04 -51.93 -0.42 0.00 16 37 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 41 H 0.38 2.80 9.06 45.56 0.41 3.22 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.07 1.09 7.13 -51.92 -0.37 0.72 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.09 2.00 6.79 -51.93 -0.35 1.65 16 LS Contribution 362.31 15.07 5.46 5.46 Total: -1.00 -35.01 362.31 -10.96 -45.98 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.04 Total: 2.11 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -3.96 Total: -10.16 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -1.50 Total: -54.79 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.26 Total: -6.05 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.01 -10.96 -45.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140233822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.317 kcal (2) G-P(sol) polarization free energy of solvation -35.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds