Wall clock time and date at job start Tue Mar 31 2020 11:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99493 * 2 1 4 4 H 1.48492 * 109.46972 * 269.99521 * 3 2 1 5 5 H 1.48495 * 109.47461 * 30.00110 * 3 2 1 6 6 H 1.48502 * 109.46565 * 149.99737 * 3 2 1 7 7 C 1.37877 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99900 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99566 * 179.97438 * 7 2 1 10 10 N 1.46904 * 109.46755 * 180.02562 * 9 7 2 11 11 C 1.46955 * 110.99926 * 170.00050 * 10 9 7 12 12 C 1.53043 * 109.36511 * 183.18604 * 11 10 9 13 13 N 1.46965 * 109.36679 * 301.60079 * 12 11 10 14 14 C 1.46895 * 111.00229 * 183.18710 * 13 12 11 15 15 C 1.50697 * 109.47364 * 164.18241 * 14 13 12 16 16 C 1.34215 * 126.50156 * 105.29602 * 15 14 13 17 17 N 1.36928 * 109.88318 * 179.97438 * 16 15 14 18 18 H 0.97008 * 125.06482 * 179.97438 * 17 16 15 19 19 C 1.37687 * 109.86889 * 359.97438 * 17 16 15 20 20 C 1.39227 * 133.37842 * 180.02562 * 19 17 16 21 21 C 1.37720 * 120.02491 * 179.97438 * 20 19 17 22 22 C 1.38787 * 120.71763 * 0.03093 * 21 20 19 23 23 C 1.38126 * 120.32061 * 0.26657 * 22 21 20 24 24 O 1.35880 * 120.22242 * 179.72828 * 23 22 21 25 25 C 1.40060 * 119.55096 * 359.44219 * 23 22 21 26 26 C 1.46951 * 110.87707 * 59.31827 * 13 12 11 27 27 C 1.46954 * 110.99771 * 293.79899 * 10 9 7 28 28 H 0.96998 * 119.99974 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47159 * 60.00695 * 9 7 2 30 30 H 1.08996 * 109.47162 * 300.00094 * 9 7 2 31 31 H 1.09004 * 109.48915 * 63.22315 * 11 10 9 32 32 H 1.08997 * 109.49030 * 303.15875 * 11 10 9 33 33 H 1.09001 * 109.49383 * 181.63604 * 12 11 10 34 34 H 1.09001 * 109.49267 * 61.56724 * 12 11 10 35 35 H 1.09004 * 109.47458 * 44.18285 * 14 13 12 36 36 H 1.09004 * 109.47364 * 284.18555 * 14 13 12 37 37 H 1.07991 * 125.05721 * 359.95573 * 16 15 14 38 38 H 1.08001 * 119.98523 * 359.97438 * 20 19 17 39 39 H 1.07995 * 119.63461 * 180.02562 * 21 20 19 40 40 H 1.08010 * 119.84066 * 179.97438 * 22 21 20 41 41 H 0.96699 * 114.00111 * 93.88081 * 24 23 22 42 42 H 1.09001 * 109.49399 * 60.65098 * 26 13 12 43 43 H 1.09007 * 109.48757 * 180.71012 * 26 13 12 44 44 H 1.08998 * 109.49454 * 296.78120 * 27 10 9 45 45 H 1.08997 * 109.49075 * 56.82526 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0013 -2.5789 0.0001 11 6 5.4506 -2.6251 -0.2387 12 6 5.9069 -4.0842 -0.3101 13 7 5.5610 -4.7651 0.9455 14 6 6.0507 -6.1500 0.9456 15 6 6.0326 -6.6891 2.3528 16 6 5.1532 -7.5669 2.8602 17 7 5.4536 -7.8217 4.1716 18 1 4.9594 -8.4239 4.7497 19 6 6.5615 -7.0958 4.5475 20 6 7.2731 -6.9851 5.7391 21 6 8.3698 -6.1554 5.8123 22 6 8.7790 -5.4220 4.7074 23 6 8.0856 -5.5105 3.5160 24 8 8.4846 -4.7874 2.4371 25 6 6.9720 -6.3552 3.4260 26 6 4.1117 -4.7188 1.1842 27 6 3.6554 -3.2597 1.2556 28 1 -0.4850 0.8400 -0.0004 29 1 3.8753 -0.6796 0.8895 30 1 3.8746 -0.6807 -0.8905 31 1 5.9697 -2.1213 0.5767 32 1 5.6802 -2.1257 -1.1800 33 1 6.9862 -4.1209 -0.4582 34 1 5.4083 -4.5809 -1.1424 35 1 7.0699 -6.1751 0.5600 36 1 5.4079 -6.7628 0.3135 37 1 4.3309 -8.0065 2.3154 38 1 6.9647 -7.5501 6.6064 39 1 8.9174 -6.0746 6.7397 40 1 9.6410 -4.7753 4.7807 41 1 9.0752 -5.2659 1.8394 42 1 3.5925 -5.2227 0.3689 43 1 3.8821 -5.2183 2.1255 44 1 4.1540 -2.7631 2.0880 45 1 2.5762 -3.2227 1.4040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140233822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:17 Heat of formation + Delta-G solvation = 11.016933 kcal Electronic energy + Delta-G solvation = -26397.940476 eV Core-core repulsion = 22801.102715 eV Total energy + Delta-G solvation = -3596.837760 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.19936 -40.04789 -38.94369 -37.03027 -36.38808 -34.60632 -32.70557 -31.76852 -30.60272 -30.17924 -29.38663 -27.31009 -24.91007 -24.37163 -23.62494 -22.88406 -22.77604 -20.58859 -20.55100 -19.25681 -18.95239 -17.82049 -17.24285 -16.91163 -16.47234 -16.34249 -15.85963 -15.79520 -15.63649 -15.47924 -15.29155 -15.10667 -14.89330 -14.74111 -14.39999 -13.77821 -13.52564 -13.31576 -13.25843 -13.02769 -12.82194 -12.69079 -12.34266 -12.21526 -12.14924 -12.04128 -11.93798 -11.82049 -11.50413 -11.35914 -11.30959 -10.78747 -10.30116 -9.18069 -9.13656 -9.00320 -8.40452 -8.29640 -6.32714 0.18115 0.68772 1.33177 1.34958 1.46122 1.70764 2.29319 2.33479 2.86001 3.02958 3.20060 3.24441 3.48609 3.88035 4.03491 4.07558 4.14675 4.24584 4.26222 4.32918 4.41338 4.47320 4.53846 4.58902 4.68252 4.77581 4.80577 4.84213 4.91874 4.93381 4.97586 5.00581 5.03509 5.13363 5.17449 5.23746 5.51743 5.59149 5.64671 5.72216 5.81899 5.95885 6.15409 6.21532 6.29385 6.40256 6.65527 6.72441 6.75109 7.05583 7.30879 8.86839 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018317 B = 0.003160 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.258316 B = 8857.843170 C = 9018.338996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.946 3.054 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.515 4.515 8 H 0.039 0.961 9 C 0.172 3.828 10 N -0.540 5.540 11 C 0.053 3.947 12 C 0.074 3.926 13 N -0.533 5.533 14 C 0.139 3.861 15 C -0.172 4.172 16 C 0.057 3.943 17 N -0.585 5.585 18 H 0.430 0.570 19 C 0.092 3.908 20 C -0.149 4.149 21 C -0.088 4.088 22 C -0.192 4.192 23 C 0.146 3.854 24 O -0.496 6.496 25 C -0.143 4.143 26 C 0.079 3.921 27 C 0.074 3.926 28 H 0.267 0.733 29 H -0.021 1.021 30 H 0.030 0.970 31 H 0.021 0.979 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.037 0.963 35 H 0.087 0.913 36 H 0.048 0.952 37 H 0.194 0.806 38 H 0.143 0.857 39 H 0.153 0.847 40 H 0.135 0.865 41 H 0.398 0.602 42 H 0.035 0.965 43 H 0.077 0.923 44 H 0.011 0.989 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.768 -19.424 8.771 29.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.188 4.188 3 Si 0.770 3.230 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.554 4.554 8 H 0.057 0.943 9 C 0.045 3.955 10 N -0.265 5.265 11 C -0.075 4.075 12 C -0.054 4.054 13 N -0.258 5.258 14 C 0.011 3.989 15 C -0.179 4.179 16 C -0.070 4.070 17 N -0.189 5.189 18 H 0.270 0.730 19 C -0.016 4.016 20 C -0.170 4.170 21 C -0.107 4.107 22 C -0.212 4.212 23 C 0.101 3.899 24 O -0.308 6.308 25 C -0.148 4.148 26 C -0.050 4.050 27 C -0.055 4.055 28 H 0.076 0.924 29 H -0.003 1.003 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.056 0.944 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.211 0.789 38 H 0.161 0.839 39 H 0.171 0.829 40 H 0.152 0.848 41 H 0.255 0.745 42 H 0.053 0.947 43 H 0.095 0.905 44 H 0.029 0.971 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 19.187 -18.970 9.046 28.458 hybrid contribution -0.344 0.518 0.040 0.623 sum 18.843 -18.452 9.086 27.895 Atomic orbital electron populations 1.70043 1.07982 1.28113 1.52565 1.25818 0.95624 1.03021 0.94316 0.85724 0.79121 0.78758 0.79409 1.18570 1.20503 1.18231 1.21229 0.90890 0.93327 1.49924 0.94292 1.19914 0.94426 0.86504 0.94659 1.62066 1.13266 1.16842 1.34342 1.22225 0.87314 0.97709 1.00245 1.22050 1.00947 0.92440 0.89996 1.62052 1.12807 1.16418 1.34553 1.20243 1.00597 0.86747 0.91274 1.20161 0.98613 1.03149 0.96016 1.22075 1.00447 1.00220 0.84306 1.41742 1.25551 1.40412 1.11234 0.73015 1.18396 0.91127 0.96604 0.95498 1.20321 0.97463 1.03752 0.95418 1.20960 0.96035 0.95055 0.98686 1.21349 1.02497 1.03873 0.93471 1.18109 0.92509 0.90871 0.88457 1.84849 1.69032 1.41146 1.35740 1.19609 0.99266 1.01003 0.94966 1.21933 0.88129 0.94501 1.00422 1.21887 0.99350 0.94585 0.89645 0.92371 1.00306 0.95187 0.96077 0.90133 0.88254 0.94445 0.89461 0.93425 0.78888 0.83881 0.82947 0.84755 0.74482 0.94689 0.90467 0.97110 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.38 13.96 21.45 0.30 -60.08 16 2 C 0.01 0.58 5.47 84.65 0.46 1.04 16 3 Si 0.95 45.74 27.47 68.60 1.88 47.62 16 4 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.26 -12.01 6.54 99.48 0.65 -11.36 16 7 C -0.52 -31.05 9.03 25.60 0.23 -30.82 16 8 H 0.04 2.59 7.38 -2.91 -0.02 2.57 16 9 C 0.17 8.85 3.79 85.56 0.32 9.17 16 10 N -0.54 -24.17 4.70 -900.30 -4.23 -28.41 16 11 C 0.05 1.92 5.61 86.31 0.48 2.41 16 12 C 0.07 2.10 5.58 86.31 0.48 2.58 16 13 N -0.53 -15.56 4.66 -900.28 -4.19 -19.76 16 14 C 0.14 3.11 5.24 85.56 0.45 3.55 16 15 C -0.17 -3.90 5.04 -18.63 -0.09 -3.99 16 16 C 0.06 1.02 11.38 82.98 0.94 1.96 16 17 N -0.59 -9.52 6.07 -187.59 -1.14 -10.66 16 18 H 0.43 4.09 8.96 -92.70 -0.83 3.26 16 19 C 0.09 1.94 7.27 39.02 0.28 2.22 16 20 C -0.15 -2.63 10.07 22.39 0.23 -2.41 16 21 C -0.09 -1.54 10.01 22.28 0.22 -1.32 16 22 C -0.19 -4.03 9.97 22.37 0.22 -3.81 16 23 C 0.15 3.57 6.74 22.69 0.15 3.72 16 24 O -0.50 -11.61 13.23 -92.20 -1.22 -12.83 16 25 C -0.14 -3.54 6.30 -20.13 -0.13 -3.67 16 26 C 0.08 2.62 5.44 86.31 0.47 3.09 16 27 C 0.07 3.17 5.43 86.31 0.47 3.64 16 28 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 29 H -0.02 -1.09 7.18 -2.39 -0.02 -1.11 16 30 H 0.03 1.50 7.45 -2.39 -0.02 1.48 16 31 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.08 2.69 8.07 -2.39 -0.02 2.67 16 33 H 0.10 2.30 8.02 -2.39 -0.02 2.28 16 34 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.71 7.92 -2.39 -0.02 1.69 16 36 H 0.05 0.97 8.04 -2.39 -0.02 0.95 16 37 H 0.19 2.30 8.06 -2.92 -0.02 2.28 16 38 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 40 H 0.13 2.43 8.06 -2.91 -0.02 2.40 16 41 H 0.40 5.52 9.06 -74.06 -0.67 4.85 16 42 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.08 2.42 7.13 -2.38 -0.02 2.40 16 44 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.06 2.71 6.79 -2.39 -0.02 2.70 16 Total: -1.00 -77.50 362.31 -3.94 -81.44 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -0.55 Total: 15.31 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 5.20 Total: -12.64 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -9.26 Total: -118.90 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -1.22 Total: -12.83 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.88 Total: 47.62 kcal Total: -77.50 -3.94 -81.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140233822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.457 kcal (2) G-P(sol) polarization free energy of solvation -77.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds