Wall clock time and date at job start Tue Mar 31 2020 10:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.20764 * 119.99631 * 2 1 4 4 C 1.50689 * 120.00445 * 180.02562 * 2 1 3 5 5 C 1.50706 * 109.46004 * 293.45192 * 4 2 1 6 6 C 1.38231 * 120.00247 * 116.65386 * 5 4 2 7 7 C 1.38235 * 119.99645 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00169 * 0.02562 * 7 6 5 9 9 C 1.38233 * 120.00171 * 359.96881 * 8 7 6 10 10 C 1.38234 * 120.00007 * 0.03376 * 9 8 7 11 11 C 1.53042 * 109.46118 * 53.41960 * 4 2 1 12 12 C 1.53186 * 109.31070 * 58.63062 * 11 4 2 13 13 N 1.46928 * 108.76645 * 54.65802 * 12 11 4 14 14 C 1.34781 * 120.63434 * 126.35946 * 13 12 11 15 15 O 1.21269 * 120.00207 * 180.02562 * 14 13 12 16 16 C 1.50699 * 119.99629 * 0.02562 * 14 13 12 17 17 C 1.50698 * 109.47000 * 179.97438 * 16 14 13 18 18 H 1.07995 * 120.00024 * 359.97438 * 17 16 14 19 19 C 1.37877 * 120.00373 * 179.97438 * 17 16 14 20 20 N 1.31524 * 119.99778 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00358 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47117 * 60.00396 * 21 19 17 23 23 H 1.48502 * 109.47147 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47108 * 300.00217 * 21 19 17 25 25 C 1.46925 * 118.73889 * 306.38280 * 13 12 11 26 26 C 1.53039 * 109.46542 * 173.47860 * 4 2 1 27 27 H 1.09001 * 109.46516 * 185.25168 * 1 2 3 28 28 H 1.08998 * 109.46872 * 305.25420 * 1 2 3 29 29 H 1.09000 * 109.47061 * 65.25984 * 1 2 3 30 30 H 1.08000 * 120.00003 * 359.97438 * 6 5 4 31 31 H 1.08004 * 119.99934 * 179.97438 * 7 6 5 32 32 H 1.08006 * 119.99933 * 179.70154 * 8 7 6 33 33 H 1.08000 * 120.00248 * 179.97438 * 9 8 7 34 34 H 1.07997 * 120.00027 * 179.97438 * 10 9 8 35 35 H 1.08999 * 109.49727 * 178.59510 * 11 4 2 36 36 H 1.09003 * 109.49891 * 298.69003 * 11 4 2 37 37 H 1.08994 * 109.59988 * 294.86481 * 12 11 4 38 38 H 1.09001 * 109.58395 * 174.43419 * 12 11 4 39 39 H 1.09001 * 109.47071 * 299.99854 * 16 14 13 40 40 H 1.09003 * 109.47495 * 59.99495 * 16 14 13 41 41 H 0.96996 * 120.00025 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.58731 * 293.82180 * 25 13 12 43 43 H 1.08995 * 109.70887 * 173.46828 * 25 13 12 44 44 H 1.08997 * 109.49852 * 61.30690 * 26 4 2 45 45 H 1.08997 * 109.49999 * 181.37322 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3049 -0.0006 5 6 2.0219 -2.0231 1.3027 6 6 1.3774 -3.2459 1.3101 7 6 1.1590 -3.9048 2.5055 8 6 1.5847 -3.3406 3.6935 9 6 2.2294 -2.1178 3.6861 10 6 2.4478 -1.4589 2.4907 11 6 1.7709 -2.1760 -1.1597 12 6 1.9829 -1.4285 -2.4799 13 7 3.3945 -1.0326 -2.5775 14 6 4.1275 -1.3637 -3.6590 15 8 5.2918 -1.0314 -3.7273 16 6 3.5002 -2.1470 -4.7832 17 6 4.5245 -2.3843 -5.8628 18 1 5.5291 -2.0054 -5.7465 19 6 4.1792 -3.0850 -6.9988 20 7 2.9556 -3.5460 -7.1406 21 14 5.4487 -3.3786 -8.3373 22 1 6.5909 -4.1444 -7.7768 23 1 4.8306 -4.1505 -9.4451 24 1 5.9338 -2.0737 -8.8542 25 6 3.9920 -0.2692 -1.4734 26 6 3.7571 -1.0296 -0.1643 27 1 -0.3632 -1.0234 0.0941 28 1 -0.3633 0.5932 0.8392 29 1 -0.3633 0.4301 -0.9333 30 1 1.0444 -3.6865 0.3820 31 1 0.6550 -4.8600 2.5114 32 1 1.4098 -3.8532 4.6280 33 1 2.5616 -1.6769 4.6143 34 1 2.9510 -0.5034 2.4849 35 1 2.3329 -3.1098 -1.1758 36 1 0.7102 -2.3914 -1.0301 37 1 1.3518 -0.5401 -2.5025 38 1 1.7281 -2.0816 -3.3146 39 1 3.1430 -3.1044 -4.4039 40 1 2.6625 -1.5841 -5.1951 41 1 2.7125 -4.0386 -7.9400 42 1 3.5248 0.7138 -1.4138 43 1 5.0627 -0.1551 -1.6426 44 1 4.1103 -0.4289 0.6738 45 1 4.3002 -1.9743 -0.1893 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143197235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:34 Heat of formation + Delta-G solvation = -49.230017 kcal Electronic energy + Delta-G solvation = -26869.379100 eV Core-core repulsion = 23237.636084 eV Total energy + Delta-G solvation = -3631.743015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28233 -39.04350 -38.65612 -36.47601 -33.73719 -32.99825 -31.86830 -30.98102 -30.18249 -29.58546 -28.65796 -25.62034 -24.04041 -23.55973 -22.13807 -21.80462 -21.77669 -19.14791 -18.20769 -17.40054 -16.52595 -16.07675 -15.88896 -15.48659 -15.35388 -15.18494 -14.80057 -14.70287 -14.46593 -14.31341 -13.72740 -13.57697 -13.35924 -13.03471 -12.91893 -12.68873 -12.49844 -12.19926 -12.14348 -12.02931 -11.96803 -11.61565 -11.42487 -11.18154 -11.07101 -10.77140 -10.72269 -10.59137 -10.47358 -9.94031 -9.77064 -9.22118 -9.15115 -8.84835 -8.59162 -8.42731 -8.05216 -6.05648 -4.04667 1.06594 1.16466 1.83482 3.38102 3.39846 3.45226 3.48936 3.63846 3.69695 3.92774 4.33632 4.47916 4.48764 4.66384 4.76886 4.81622 4.88955 4.92795 5.08831 5.22700 5.23813 5.28659 5.32536 5.34655 5.39011 5.54770 5.57012 5.66082 5.72304 5.76882 5.80884 5.82948 5.92187 6.00042 6.08194 6.24774 6.28320 6.30352 6.38356 6.39680 6.74841 7.03776 7.21016 7.31521 7.37936 7.96844 7.99777 8.39007 9.05708 9.22949 9.60364 11.06741 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.003314 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.896465 B = 8446.006297 C = 8816.494389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.373 3.627 3 O -0.447 6.447 4 C -0.064 4.064 5 C -0.066 4.066 6 C -0.113 4.113 7 C -0.117 4.117 8 C -0.123 4.123 9 C -0.118 4.118 10 C -0.115 4.115 11 C -0.124 4.124 12 C 0.106 3.894 13 N -0.628 5.628 14 C 0.517 3.483 15 O -0.544 6.544 16 C 0.008 3.992 17 C -0.508 4.508 18 H 0.074 0.926 19 C 0.055 3.945 20 N -0.902 5.902 21 Si 0.901 3.099 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.101 3.899 26 C -0.108 4.108 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.132 0.868 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.056 0.944 38 H 0.105 0.895 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.262 0.738 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.848 1.289 21.907 24.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.248 3.752 3 O -0.320 6.320 4 C -0.065 4.065 5 C -0.066 4.066 6 C -0.130 4.130 7 C -0.135 4.135 8 C -0.141 4.141 9 C -0.136 4.136 10 C -0.133 4.133 11 C -0.162 4.162 12 C -0.018 4.018 13 N -0.365 5.365 14 C 0.309 3.691 15 O -0.420 6.420 16 C -0.031 4.031 17 C -0.547 4.547 18 H 0.092 0.908 19 C -0.145 4.145 20 N -0.542 5.542 21 Si 0.729 3.271 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.201 1.201 25 C -0.022 4.022 26 C -0.146 4.146 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.150 0.850 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.123 0.877 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.979 1.935 21.708 23.571 hybrid contribution 0.414 -0.366 -0.569 0.793 sum -8.566 1.569 21.139 22.862 Atomic orbital electron populations 1.22279 0.94284 1.04786 1.04728 1.24429 0.91850 0.89344 0.69616 1.90367 1.71687 1.34740 1.35208 1.20187 0.97646 0.94876 0.93801 1.19474 0.98832 0.95216 0.93075 1.21247 0.98567 0.94523 0.98707 1.21179 0.99977 0.99912 0.92467 1.21179 0.98821 0.95875 0.98208 1.21114 0.99199 0.95462 0.97794 1.21064 0.99859 1.00232 0.92104 1.22117 1.01994 0.99091 0.92990 1.21689 0.82847 0.99069 0.98160 1.48387 1.11112 1.57168 1.19819 1.22043 0.86329 0.78270 0.82470 1.90520 1.17563 1.54641 1.79243 1.19235 0.97827 0.95208 0.90822 1.21151 0.97829 1.34318 1.01380 0.90796 1.24990 0.95573 0.95575 0.98371 1.69942 1.18027 1.37749 1.28437 0.86491 0.81381 0.78376 0.80825 1.20125 1.21359 1.20132 1.21649 1.00866 0.94758 0.84907 1.21847 0.92445 1.01632 0.98725 0.89835 0.89274 0.88613 0.85011 0.85884 0.86185 0.86092 0.86113 0.89570 0.89757 0.92531 0.87726 0.93499 0.93567 0.92875 0.90663 0.89211 0.90645 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.68 9.75 36.01 0.35 -1.33 16 2 C 0.37 4.25 4.21 -29.04 -0.12 4.13 16 3 O -0.45 -6.42 14.59 6.00 0.09 -6.33 16 4 C -0.06 -0.72 0.41 -156.77 -0.06 -0.78 16 5 C -0.07 -0.66 4.53 -104.62 -0.47 -1.13 16 6 C -0.11 -1.01 8.99 -39.58 -0.36 -1.37 16 7 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 8 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 9 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 10 C -0.11 -1.12 8.86 -39.58 -0.35 -1.47 16 11 C -0.12 -1.36 3.31 -26.61 -0.09 -1.45 16 12 C 0.11 1.52 5.99 -3.71 -0.02 1.49 16 13 N -0.63 -11.48 2.97 -172.77 -0.51 -11.99 16 14 C 0.52 12.13 7.69 -10.98 -0.08 12.05 16 15 O -0.54 -14.62 14.88 5.57 0.08 -14.53 16 16 C 0.01 0.21 3.81 -29.04 -0.11 0.10 16 17 C -0.51 -14.85 8.92 -34.44 -0.31 -15.16 16 18 H 0.07 2.26 6.75 -52.49 -0.35 1.91 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.90 -26.16 13.29 55.43 0.74 -25.43 16 21 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.10 1.68 6.03 -3.71 -0.02 1.65 16 26 C -0.11 -1.45 4.32 -26.61 -0.12 -1.56 16 27 H 0.08 0.55 6.91 -51.93 -0.36 0.20 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.13 1.03 5.90 -52.49 -0.31 0.72 16 31 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 32 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 33 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.12 1.18 7.37 -52.49 -0.39 0.79 16 35 H 0.09 1.01 7.75 -51.93 -0.40 0.61 16 36 H 0.08 0.68 6.12 -51.93 -0.32 0.36 16 37 H 0.06 0.74 7.37 -51.93 -0.38 0.36 16 38 H 0.10 1.59 5.93 -51.93 -0.31 1.28 16 39 H 0.05 1.19 7.69 -51.93 -0.40 0.79 16 40 H 0.05 1.19 7.94 -51.93 -0.41 0.77 16 41 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.08 1.27 5.79 -51.93 -0.30 0.97 16 43 H 0.09 1.66 7.01 -51.93 -0.36 1.30 16 44 H 0.07 0.94 7.08 -51.93 -0.37 0.57 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 355.55 15.07 5.36 5.36 Total: -1.00 -34.06 355.55 -8.66 -42.72 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.34 Total: 0.45 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -3.06 Total: -7.45 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.22 Total: -37.42 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: 0.17 Total: -20.86 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.06 -8.66 -42.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.510 kcal (2) G-P(sol) polarization free energy of solvation -34.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds