Wall clock time and date at job start Tue Mar 31 2020 10:52:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 O 1.20764 * 119.99631 * 2 1
4 4 C 1.50689 * 120.00445 * 180.02562 * 2 1 3
5 5 C 1.50706 * 109.46004 * 293.45192 * 4 2 1
6 6 C 1.38231 * 120.00247 * 116.65386 * 5 4 2
7 7 C 1.38235 * 119.99645 * 179.97438 * 6 5 4
8 8 C 1.38234 * 120.00169 * 0.02562 * 7 6 5
9 9 C 1.38233 * 120.00171 * 359.96881 * 8 7 6
10 10 C 1.38234 * 120.00007 * 0.03376 * 9 8 7
11 11 C 1.53042 * 109.46118 * 53.41960 * 4 2 1
12 12 C 1.53186 * 109.31070 * 58.63062 * 11 4 2
13 13 N 1.46928 * 108.76645 * 54.65802 * 12 11 4
14 14 C 1.34781 * 120.63434 * 126.35946 * 13 12 11
15 15 O 1.21269 * 120.00207 * 180.02562 * 14 13 12
16 16 C 1.50699 * 119.99629 * 0.02562 * 14 13 12
17 17 C 1.50698 * 109.47000 * 179.97438 * 16 14 13
18 18 H 1.07995 * 120.00024 * 359.97438 * 17 16 14
19 19 C 1.37877 * 120.00373 * 179.97438 * 17 16 14
20 20 N 1.31524 * 119.99778 * 0.02562 * 19 17 16
21 21 Si 1.86797 * 120.00358 * 179.97438 * 19 17 16
22 22 H 1.48499 * 109.47117 * 60.00396 * 21 19 17
23 23 H 1.48502 * 109.47147 * 180.02562 * 21 19 17
24 24 H 1.48496 * 109.47108 * 300.00217 * 21 19 17
25 25 C 1.46925 * 118.73889 * 306.38280 * 13 12 11
26 26 C 1.53039 * 109.46542 * 173.47860 * 4 2 1
27 27 H 1.09001 * 109.46516 * 185.25168 * 1 2 3
28 28 H 1.08998 * 109.46872 * 305.25420 * 1 2 3
29 29 H 1.09000 * 109.47061 * 65.25984 * 1 2 3
30 30 H 1.08000 * 120.00003 * 359.97438 * 6 5 4
31 31 H 1.08004 * 119.99934 * 179.97438 * 7 6 5
32 32 H 1.08006 * 119.99933 * 179.70154 * 8 7 6
33 33 H 1.08000 * 120.00248 * 179.97438 * 9 8 7
34 34 H 1.07997 * 120.00027 * 179.97438 * 10 9 8
35 35 H 1.08999 * 109.49727 * 178.59510 * 11 4 2
36 36 H 1.09003 * 109.49891 * 298.69003 * 11 4 2
37 37 H 1.08994 * 109.59988 * 294.86481 * 12 11 4
38 38 H 1.09001 * 109.58395 * 174.43419 * 12 11 4
39 39 H 1.09001 * 109.47071 * 299.99854 * 16 14 13
40 40 H 1.09003 * 109.47495 * 59.99495 * 16 14 13
41 41 H 0.96996 * 120.00025 * 179.97438 * 20 19 17
42 42 H 1.09003 * 109.58731 * 293.82180 * 25 13 12
43 43 H 1.08995 * 109.70887 * 173.46828 * 25 13 12
44 44 H 1.08997 * 109.49852 * 61.30690 * 26 4 2
45 45 H 1.08997 * 109.49999 * 181.37322 * 26 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 8 2.1108 1.0459 0.0000
4 6 2.2606 -1.3049 -0.0006
5 6 2.0219 -2.0231 1.3027
6 6 1.3774 -3.2459 1.3101
7 6 1.1590 -3.9048 2.5055
8 6 1.5847 -3.3406 3.6935
9 6 2.2294 -2.1178 3.6861
10 6 2.4478 -1.4589 2.4907
11 6 1.7709 -2.1760 -1.1597
12 6 1.9829 -1.4285 -2.4799
13 7 3.3945 -1.0326 -2.5775
14 6 4.1275 -1.3637 -3.6590
15 8 5.2918 -1.0314 -3.7273
16 6 3.5002 -2.1470 -4.7832
17 6 4.5245 -2.3843 -5.8628
18 1 5.5291 -2.0054 -5.7465
19 6 4.1792 -3.0850 -6.9988
20 7 2.9556 -3.5460 -7.1406
21 14 5.4487 -3.3786 -8.3373
22 1 6.5909 -4.1444 -7.7768
23 1 4.8306 -4.1505 -9.4451
24 1 5.9338 -2.0737 -8.8542
25 6 3.9920 -0.2692 -1.4734
26 6 3.7571 -1.0296 -0.1643
27 1 -0.3632 -1.0234 0.0941
28 1 -0.3633 0.5932 0.8392
29 1 -0.3633 0.4301 -0.9333
30 1 1.0444 -3.6865 0.3820
31 1 0.6550 -4.8600 2.5114
32 1 1.4098 -3.8532 4.6280
33 1 2.5616 -1.6769 4.6143
34 1 2.9510 -0.5034 2.4849
35 1 2.3329 -3.1098 -1.1758
36 1 0.7102 -2.3914 -1.0301
37 1 1.3518 -0.5401 -2.5025
38 1 1.7281 -2.0816 -3.3146
39 1 3.1430 -3.1044 -4.4039
40 1 2.6625 -1.5841 -5.1951
41 1 2.7125 -4.0386 -7.9400
42 1 3.5248 0.7138 -1.4138
43 1 5.0627 -0.1551 -1.6426
44 1 4.1103 -0.4289 0.6738
45 1 4.3002 -1.9743 -0.1893
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001143197235.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:52:34
Heat of formation + Delta-G solvation = -49.230017 kcal
Electronic energy + Delta-G solvation = -26869.379100 eV
Core-core repulsion = 23237.636084 eV
Total energy + Delta-G solvation = -3631.743015 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.162 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.28233 -39.04350 -38.65612 -36.47601 -33.73719 -32.99825 -31.86830 -30.98102
-30.18249 -29.58546 -28.65796 -25.62034 -24.04041 -23.55973 -22.13807 -21.80462
-21.77669 -19.14791 -18.20769 -17.40054 -16.52595 -16.07675 -15.88896 -15.48659
-15.35388 -15.18494 -14.80057 -14.70287 -14.46593 -14.31341 -13.72740 -13.57697
-13.35924 -13.03471 -12.91893 -12.68873 -12.49844 -12.19926 -12.14348 -12.02931
-11.96803 -11.61565 -11.42487 -11.18154 -11.07101 -10.77140 -10.72269 -10.59137
-10.47358 -9.94031 -9.77064 -9.22118 -9.15115 -8.84835 -8.59162 -8.42731
-8.05216 -6.05648 -4.04667 1.06594 1.16466 1.83482 3.38102 3.39846
3.45226 3.48936 3.63846 3.69695 3.92774 4.33632 4.47916 4.48764
4.66384 4.76886 4.81622 4.88955 4.92795 5.08831 5.22700 5.23813
5.28659 5.32536 5.34655 5.39011 5.54770 5.57012 5.66082 5.72304
5.76882 5.80884 5.82948 5.92187 6.00042 6.08194 6.24774 6.28320
6.30352 6.38356 6.39680 6.74841 7.03776 7.21016 7.31521 7.37936
7.96844 7.99777 8.39007 9.05708 9.22949 9.60364 11.06741
Molecular weight = 315.16amu
Principal moments of inertia in cm(-1)
A = 0.020126 B = 0.003314 C = 0.003175
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1390.896465 B = 8446.006297 C = 8816.494389
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C 0.373 3.627
3 O -0.447 6.447
4 C -0.064 4.064
5 C -0.066 4.066
6 C -0.113 4.113
7 C -0.117 4.117
8 C -0.123 4.123
9 C -0.118 4.118
10 C -0.115 4.115
11 C -0.124 4.124
12 C 0.106 3.894
13 N -0.628 5.628
14 C 0.517 3.483
15 O -0.544 6.544
16 C 0.008 3.992
17 C -0.508 4.508
18 H 0.074 0.926
19 C 0.055 3.945
20 N -0.902 5.902
21 Si 0.901 3.099
22 H -0.276 1.276
23 H -0.288 1.288
24 H -0.276 1.276
25 C 0.101 3.899
26 C -0.108 4.108
27 H 0.083 0.917
28 H 0.089 0.911
29 H 0.095 0.905
30 H 0.132 0.868
31 H 0.123 0.877
32 H 0.120 0.880
33 H 0.121 0.879
34 H 0.121 0.879
35 H 0.086 0.914
36 H 0.084 0.916
37 H 0.056 0.944
38 H 0.105 0.895
39 H 0.047 0.953
40 H 0.046 0.954
41 H 0.262 0.738
42 H 0.075 0.925
43 H 0.090 0.910
44 H 0.075 0.925
45 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.848 1.289 21.907 24.053
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.261 4.261
2 C 0.248 3.752
3 O -0.320 6.320
4 C -0.065 4.065
5 C -0.066 4.066
6 C -0.130 4.130
7 C -0.135 4.135
8 C -0.141 4.141
9 C -0.136 4.136
10 C -0.133 4.133
11 C -0.162 4.162
12 C -0.018 4.018
13 N -0.365 5.365
14 C 0.309 3.691
15 O -0.420 6.420
16 C -0.031 4.031
17 C -0.547 4.547
18 H 0.092 0.908
19 C -0.145 4.145
20 N -0.542 5.542
21 Si 0.729 3.271
22 H -0.201 1.201
23 H -0.214 1.214
24 H -0.201 1.201
25 C -0.022 4.022
26 C -0.146 4.146
27 H 0.102 0.898
28 H 0.107 0.893
29 H 0.114 0.886
30 H 0.150 0.850
31 H 0.141 0.859
32 H 0.138 0.862
33 H 0.139 0.861
34 H 0.139 0.861
35 H 0.104 0.896
36 H 0.102 0.898
37 H 0.075 0.925
38 H 0.123 0.877
39 H 0.065 0.935
40 H 0.064 0.936
41 H 0.071 0.929
42 H 0.093 0.907
43 H 0.108 0.892
44 H 0.094 0.906
45 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -8.979 1.935 21.708 23.571
hybrid contribution 0.414 -0.366 -0.569 0.793
sum -8.566 1.569 21.139 22.862
Atomic orbital electron populations
1.22279 0.94284 1.04786 1.04728 1.24429 0.91850 0.89344 0.69616
1.90367 1.71687 1.34740 1.35208 1.20187 0.97646 0.94876 0.93801
1.19474 0.98832 0.95216 0.93075 1.21247 0.98567 0.94523 0.98707
1.21179 0.99977 0.99912 0.92467 1.21179 0.98821 0.95875 0.98208
1.21114 0.99199 0.95462 0.97794 1.21064 0.99859 1.00232 0.92104
1.22117 1.01994 0.99091 0.92990 1.21689 0.82847 0.99069 0.98160
1.48387 1.11112 1.57168 1.19819 1.22043 0.86329 0.78270 0.82470
1.90520 1.17563 1.54641 1.79243 1.19235 0.97827 0.95208 0.90822
1.21151 0.97829 1.34318 1.01380 0.90796 1.24990 0.95573 0.95575
0.98371 1.69942 1.18027 1.37749 1.28437 0.86491 0.81381 0.78376
0.80825 1.20125 1.21359 1.20132 1.21649 1.00866 0.94758 0.84907
1.21847 0.92445 1.01632 0.98725 0.89835 0.89274 0.88613 0.85011
0.85884 0.86185 0.86092 0.86113 0.89570 0.89757 0.92531 0.87726
0.93499 0.93567 0.92875 0.90663 0.89211 0.90645 0.90760
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -1.68 9.75 36.01 0.35 -1.33 16
2 C 0.37 4.25 4.21 -29.04 -0.12 4.13 16
3 O -0.45 -6.42 14.59 6.00 0.09 -6.33 16
4 C -0.06 -0.72 0.41 -156.77 -0.06 -0.78 16
5 C -0.07 -0.66 4.53 -104.62 -0.47 -1.13 16
6 C -0.11 -1.01 8.99 -39.58 -0.36 -1.37 16
7 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16
8 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16
9 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16
10 C -0.11 -1.12 8.86 -39.58 -0.35 -1.47 16
11 C -0.12 -1.36 3.31 -26.61 -0.09 -1.45 16
12 C 0.11 1.52 5.99 -3.71 -0.02 1.49 16
13 N -0.63 -11.48 2.97 -172.77 -0.51 -11.99 16
14 C 0.52 12.13 7.69 -10.98 -0.08 12.05 16
15 O -0.54 -14.62 14.88 5.57 0.08 -14.53 16
16 C 0.01 0.21 3.81 -29.04 -0.11 0.10 16
17 C -0.51 -14.85 8.92 -34.44 -0.31 -15.16 16
18 H 0.07 2.26 6.75 -52.49 -0.35 1.91 16
19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16
20 N -0.90 -26.16 13.29 55.43 0.74 -25.43 16
21 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16
22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
25 C 0.10 1.68 6.03 -3.71 -0.02 1.65 16
26 C -0.11 -1.45 4.32 -26.61 -0.12 -1.56 16
27 H 0.08 0.55 6.91 -51.93 -0.36 0.20 16
28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16
29 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16
30 H 0.13 1.03 5.90 -52.49 -0.31 0.72 16
31 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16
32 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16
33 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16
34 H 0.12 1.18 7.37 -52.49 -0.39 0.79 16
35 H 0.09 1.01 7.75 -51.93 -0.40 0.61 16
36 H 0.08 0.68 6.12 -51.93 -0.32 0.36 16
37 H 0.06 0.74 7.37 -51.93 -0.38 0.36 16
38 H 0.10 1.59 5.93 -51.93 -0.31 1.28 16
39 H 0.05 1.19 7.69 -51.93 -0.40 0.79 16
40 H 0.05 1.19 7.94 -51.93 -0.41 0.77 16
41 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16
42 H 0.08 1.27 5.79 -51.93 -0.30 0.97 16
43 H 0.09 1.66 7.01 -51.93 -0.36 1.30 16
44 H 0.07 0.94 7.08 -51.93 -0.37 0.57 16
45 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16
LS Contribution 355.55 15.07 5.36 5.36
Total: -1.00 -34.06 355.55 -8.66 -42.72
By element:
Atomic # 1 Polarization: 6.79 SS G_CDS: -6.34 Total: 0.45 kcal
Atomic # 6 Polarization: -4.40 SS G_CDS: -3.06 Total: -7.45 kcal
Atomic # 7 Polarization: -37.65 SS G_CDS: 0.22 Total: -37.42 kcal
Atomic # 8 Polarization: -21.03 SS G_CDS: 0.17 Total: -20.86 kcal
Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal
Total LS contribution 5.36 Total: 5.36 kcal
Total: -34.06 -8.66 -42.72 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001143197235.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.510 kcal
(2) G-P(sol) polarization free energy of solvation -34.057 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.567 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.720 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.230 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds