Wall clock time and date at job start Tue Mar 31 2020 10:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.20764 * 119.99631 * 2 1 4 4 C 1.50689 * 120.00445 * 180.02562 * 2 1 3 5 5 C 1.50706 * 109.46004 * 293.45192 * 4 2 1 6 6 C 1.38231 * 120.00247 * 116.65386 * 5 4 2 7 7 C 1.38235 * 119.99645 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00169 * 0.02562 * 7 6 5 9 9 C 1.38233 * 120.00171 * 359.96881 * 8 7 6 10 10 C 1.38234 * 120.00007 * 0.03376 * 9 8 7 11 11 C 1.53042 * 109.46118 * 53.41960 * 4 2 1 12 12 C 1.53186 * 109.31070 * 58.63062 * 11 4 2 13 13 N 1.46928 * 108.76645 * 54.65802 * 12 11 4 14 14 C 1.34781 * 120.63434 * 126.35946 * 13 12 11 15 15 O 1.21269 * 120.00207 * 180.02562 * 14 13 12 16 16 C 1.50699 * 119.99629 * 0.02562 * 14 13 12 17 17 C 1.50698 * 109.47000 * 179.97438 * 16 14 13 18 18 H 1.07995 * 120.00024 * 359.97438 * 17 16 14 19 19 C 1.37877 * 120.00373 * 179.97438 * 17 16 14 20 20 N 1.31524 * 119.99778 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00358 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47117 * 60.00396 * 21 19 17 23 23 H 1.48502 * 109.47147 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47108 * 300.00217 * 21 19 17 25 25 C 1.46925 * 118.73889 * 306.38280 * 13 12 11 26 26 C 1.53039 * 109.46542 * 173.47860 * 4 2 1 27 27 H 1.09001 * 109.46516 * 185.25168 * 1 2 3 28 28 H 1.08998 * 109.46872 * 305.25420 * 1 2 3 29 29 H 1.09000 * 109.47061 * 65.25984 * 1 2 3 30 30 H 1.08000 * 120.00003 * 359.97438 * 6 5 4 31 31 H 1.08004 * 119.99934 * 179.97438 * 7 6 5 32 32 H 1.08006 * 119.99933 * 179.70154 * 8 7 6 33 33 H 1.08000 * 120.00248 * 179.97438 * 9 8 7 34 34 H 1.07997 * 120.00027 * 179.97438 * 10 9 8 35 35 H 1.08999 * 109.49727 * 178.59510 * 11 4 2 36 36 H 1.09003 * 109.49891 * 298.69003 * 11 4 2 37 37 H 1.08994 * 109.59988 * 294.86481 * 12 11 4 38 38 H 1.09001 * 109.58395 * 174.43419 * 12 11 4 39 39 H 1.09001 * 109.47071 * 299.99854 * 16 14 13 40 40 H 1.09003 * 109.47495 * 59.99495 * 16 14 13 41 41 H 0.96996 * 120.00025 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.58731 * 293.82180 * 25 13 12 43 43 H 1.08995 * 109.70887 * 173.46828 * 25 13 12 44 44 H 1.08997 * 109.49852 * 61.30690 * 26 4 2 45 45 H 1.08997 * 109.49999 * 181.37322 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3049 -0.0006 5 6 2.0219 -2.0231 1.3027 6 6 1.3774 -3.2459 1.3101 7 6 1.1590 -3.9048 2.5055 8 6 1.5847 -3.3406 3.6935 9 6 2.2294 -2.1178 3.6861 10 6 2.4478 -1.4589 2.4907 11 6 1.7709 -2.1760 -1.1597 12 6 1.9829 -1.4285 -2.4799 13 7 3.3945 -1.0326 -2.5775 14 6 4.1275 -1.3637 -3.6590 15 8 5.2918 -1.0314 -3.7273 16 6 3.5002 -2.1470 -4.7832 17 6 4.5245 -2.3843 -5.8628 18 1 5.5291 -2.0054 -5.7465 19 6 4.1792 -3.0850 -6.9988 20 7 2.9556 -3.5460 -7.1406 21 14 5.4487 -3.3786 -8.3373 22 1 6.5909 -4.1444 -7.7768 23 1 4.8306 -4.1505 -9.4451 24 1 5.9338 -2.0737 -8.8542 25 6 3.9920 -0.2692 -1.4734 26 6 3.7571 -1.0296 -0.1643 27 1 -0.3632 -1.0234 0.0941 28 1 -0.3633 0.5932 0.8392 29 1 -0.3633 0.4301 -0.9333 30 1 1.0444 -3.6865 0.3820 31 1 0.6550 -4.8600 2.5114 32 1 1.4098 -3.8532 4.6280 33 1 2.5616 -1.6769 4.6143 34 1 2.9510 -0.5034 2.4849 35 1 2.3329 -3.1098 -1.1758 36 1 0.7102 -2.3914 -1.0301 37 1 1.3518 -0.5401 -2.5025 38 1 1.7281 -2.0816 -3.3146 39 1 3.1430 -3.1044 -4.4039 40 1 2.6625 -1.5841 -5.1951 41 1 2.7125 -4.0386 -7.9400 42 1 3.5248 0.7138 -1.4138 43 1 5.0627 -0.1551 -1.6426 44 1 4.1103 -0.4289 0.6738 45 1 4.3002 -1.9743 -0.1893 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143197235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:33 Heat of formation + Delta-G solvation = -68.728151 kcal Electronic energy + Delta-G solvation = -26870.224602 eV Core-core repulsion = 23237.636084 eV Total energy + Delta-G solvation = -3632.588518 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.28364 -40.40801 -39.64975 -37.79030 -35.15851 -34.95216 -32.99806 -31.78073 -31.20640 -30.49345 -30.39440 -26.91163 -25.55335 -24.83625 -23.22526 -22.81739 -22.56845 -20.53650 -19.30737 -18.69458 -18.12353 -17.49976 -17.10637 -16.77848 -16.56698 -16.28932 -16.15898 -16.01738 -15.55426 -15.27102 -14.81402 -14.71396 -14.37769 -14.32499 -14.17038 -13.96549 -13.62941 -13.43368 -13.29481 -13.13374 -12.95341 -12.89544 -12.77755 -12.58624 -12.51503 -12.23116 -12.21008 -11.99496 -11.68321 -11.51416 -11.30147 -10.68637 -10.62364 -10.48622 -9.78970 -9.57281 -9.56669 -8.25488 -6.32353 0.39484 0.52466 0.96358 1.39590 1.42143 1.50774 1.82956 2.11386 2.43681 2.80886 3.09212 3.09935 3.44528 3.55654 3.68791 3.97763 4.03510 4.12520 4.18318 4.21356 4.28301 4.32166 4.42588 4.48435 4.56165 4.62228 4.65922 4.66934 4.74151 4.81256 4.84240 4.90365 4.98019 5.03435 5.05877 5.11127 5.18861 5.24269 5.27333 5.59863 5.61050 5.66932 5.68090 5.75967 6.04598 6.12581 6.50513 6.52646 6.79506 7.32637 7.43735 8.86243 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.003314 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.896465 B = 8446.006297 C = 8816.494389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.372 3.628 3 O -0.485 6.485 4 C -0.058 4.058 5 C -0.075 4.075 6 C -0.118 4.118 7 C -0.120 4.120 8 C -0.124 4.124 9 C -0.124 4.124 10 C -0.129 4.129 11 C -0.116 4.116 12 C 0.096 3.904 13 N -0.617 5.617 14 C 0.515 3.485 15 O -0.589 6.589 16 C 0.018 3.982 17 C -0.542 4.542 18 H 0.050 0.950 19 C 0.015 3.985 20 N -0.919 5.919 21 Si 0.961 3.039 22 H -0.273 1.273 23 H -0.271 1.271 24 H -0.275 1.275 25 C 0.103 3.897 26 C -0.101 4.101 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.125 0.875 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.047 0.953 40 H 0.041 0.959 41 H 0.268 0.732 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.082 0.918 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.882 -0.009 23.202 26.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.249 3.751 3 O -0.360 6.360 4 C -0.060 4.060 5 C -0.075 4.075 6 C -0.135 4.135 7 C -0.138 4.138 8 C -0.141 4.141 9 C -0.142 4.142 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.026 4.026 13 N -0.352 5.352 14 C 0.306 3.694 15 O -0.469 6.469 16 C -0.021 4.021 17 C -0.580 4.580 18 H 0.068 0.932 19 C -0.184 4.184 20 N -0.559 5.559 21 Si 0.786 3.214 22 H -0.199 1.199 23 H -0.195 1.195 24 H -0.201 1.201 25 C -0.020 4.020 26 C -0.139 4.139 27 H 0.123 0.877 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.162 0.838 31 H 0.162 0.838 32 H 0.160 0.840 33 H 0.154 0.846 34 H 0.131 0.869 35 H 0.100 0.900 36 H 0.143 0.857 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.100 0.900 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.077 0.624 23.043 25.575 hybrid contribution 0.995 0.043 -0.877 1.326 sum -10.083 0.667 22.167 24.361 Atomic orbital electron populations 1.22327 0.91353 1.06551 1.05583 1.24911 0.93467 0.88609 0.68072 1.90363 1.72689 1.35797 1.37143 1.20094 0.95621 0.95370 0.94866 1.19325 1.00236 0.95860 0.92105 1.21421 0.98368 0.93981 0.99749 1.21490 0.99572 1.00621 0.92118 1.21511 0.97827 0.95532 0.99277 1.21350 0.99076 0.95804 0.97931 1.21117 1.00474 1.00328 0.92793 1.22121 1.04536 0.98100 0.90626 1.22014 0.80358 1.00186 1.00020 1.48318 1.12499 1.55806 1.18554 1.21694 0.85928 0.78325 0.83442 1.90489 1.19382 1.56643 1.80424 1.19022 0.96795 0.95378 0.90894 1.21344 0.97764 1.35529 1.03392 0.93170 1.25714 0.97591 0.94924 1.00154 1.69998 1.19128 1.37582 1.29191 0.85567 0.79100 0.78354 0.78403 1.19864 1.19532 1.20069 1.21694 0.99191 0.95230 0.85840 1.21743 0.94806 1.00639 0.96736 0.87669 0.88255 0.87749 0.83785 0.83751 0.83975 0.84587 0.86944 0.90002 0.85662 0.90715 0.88587 0.93523 0.94063 0.92270 0.90543 0.91833 0.89953 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.72 9.75 71.24 0.69 -2.03 16 2 C 0.37 7.92 4.21 29.10 0.12 8.04 16 3 O -0.48 -13.73 14.59 -1.46 -0.02 -13.75 16 4 C -0.06 -1.23 0.41 -53.65 -0.02 -1.25 16 5 C -0.08 -1.35 4.53 -19.86 -0.09 -1.44 16 6 C -0.12 -1.75 8.99 22.27 0.20 -1.55 16 7 C -0.12 -1.54 10.05 22.27 0.22 -1.32 16 8 C -0.12 -1.57 10.05 22.27 0.22 -1.35 16 9 C -0.12 -1.83 10.05 22.27 0.22 -1.60 16 10 C -0.13 -2.34 8.86 22.27 0.20 -2.14 16 11 C -0.12 -2.32 3.31 30.67 0.10 -2.22 16 12 C 0.10 2.67 5.99 86.36 0.52 3.19 16 13 N -0.62 -23.09 2.97 -818.92 -2.43 -25.52 16 14 C 0.51 25.16 7.69 87.66 0.67 25.83 16 15 O -0.59 -33.40 14.88 -3.00 -0.04 -33.44 16 16 C 0.02 0.96 3.81 29.10 0.11 1.07 16 17 C -0.54 -32.59 8.92 25.60 0.23 -32.37 16 18 H 0.05 3.21 6.75 -2.91 -0.02 3.19 16 19 C 0.02 0.88 5.46 84.65 0.46 1.34 16 20 N -0.92 -53.15 13.29 21.45 0.28 -52.87 16 21 Si 0.96 45.68 29.54 68.60 2.03 47.70 16 22 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 25 C 0.10 3.54 6.03 86.36 0.52 4.06 16 26 C -0.10 -2.73 4.32 30.67 0.13 -2.60 16 27 H 0.10 0.95 6.91 -2.39 -0.02 0.94 16 28 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 29 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.14 1.71 5.90 -2.91 -0.02 1.70 16 31 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 32 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 33 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 34 H 0.11 2.15 7.37 -2.91 -0.02 2.13 16 35 H 0.08 1.77 7.75 -2.39 -0.02 1.75 16 36 H 0.13 1.52 6.12 -2.39 -0.01 1.51 16 37 H 0.07 1.83 7.37 -2.39 -0.02 1.81 16 38 H 0.10 2.87 5.93 -2.39 -0.01 2.86 16 39 H 0.05 2.41 7.69 -2.39 -0.02 2.39 16 40 H 0.04 2.17 7.94 -2.39 -0.02 2.16 16 41 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 42 H 0.08 2.66 5.79 -2.39 -0.01 2.64 16 43 H 0.06 2.51 7.01 -2.39 -0.02 2.50 16 44 H 0.08 2.10 7.08 -2.39 -0.02 2.09 16 45 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -75.77 355.55 5.33 -70.44 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 1.00 Total: 13.76 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 4.52 Total: -6.32 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -2.15 Total: -78.39 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -0.07 Total: -47.19 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -75.77 5.33 -70.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.709 kcal (2) G-P(sol) polarization free energy of solvation -75.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds