Wall clock time and date at job start Tue Mar 31 2020 12:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99943 * 2 1 4 4 H 1.48501 * 109.47058 * 274.96639 * 3 2 1 5 5 H 1.48493 * 109.47187 * 34.96768 * 3 2 1 6 6 H 1.48499 * 109.46991 * 154.96823 * 3 2 1 7 7 C 1.38947 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99622 * 352.31778 * 7 2 1 9 9 N 1.37094 * 120.00317 * 172.31710 * 7 2 1 10 10 C 1.46504 * 120.00031 * 317.75668 * 9 7 2 11 11 C 1.50696 * 109.46976 * 269.99524 * 10 9 7 12 12 C 1.38235 * 120.00015 * 269.72599 * 11 10 9 13 13 C 1.38237 * 119.99585 * 179.76335 * 12 11 10 14 14 C 1.38233 * 120.00575 * 0.51290 * 13 12 11 15 15 C 1.38239 * 119.99690 * 359.73828 * 14 13 12 16 16 C 1.38234 * 119.99709 * 0.02562 * 15 14 13 17 17 C 1.34781 * 119.99956 * 137.74943 * 9 7 2 18 18 O 1.21293 * 119.99676 * 184.45942 * 17 9 7 19 19 C 1.50697 * 119.99928 * 4.45917 * 17 9 7 20 20 C 1.48486 * 105.12110 * 76.78847 * 19 17 9 21 21 N 1.49661 * 104.92172 * 73.83697 * 20 19 17 22 22 C 1.49749 * 107.76959 * 4.37751 * 21 20 19 23 23 C 1.52573 * 103.14394 * 25.90294 * 22 21 20 24 24 H 1.09001 * 112.73789 * 77.47481 * 23 22 21 25 25 C 1.52836 * 119.47016 * 213.39425 * 23 22 21 26 26 C 1.56116 * 101.39277 * 145.36449 * 25 23 22 27 27 N 1.41383 * 104.58624 * 292.26613 * 19 17 9 28 28 H 0.97000 * 119.99510 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46743 * 29.99504 * 10 9 7 30 30 H 1.09004 * 109.47026 * 149.99298 * 10 9 7 31 31 H 1.08000 * 120.00143 * 0.02562 * 12 11 10 32 32 H 1.08000 * 119.99560 * 180.22850 * 13 12 11 33 33 H 1.07996 * 120.00379 * 179.72575 * 14 13 12 34 34 H 1.07997 * 120.00341 * 179.97438 * 15 14 13 35 35 H 1.08011 * 119.99928 * 179.97438 * 16 15 14 36 36 H 1.08998 * 110.36829 * 314.94539 * 20 19 17 37 37 H 1.09000 * 110.36757 * 192.72859 * 20 19 17 38 38 H 1.00904 * 111.00503 * 126.12049 * 21 20 19 39 39 H 1.08990 * 110.68351 * 144.31408 * 22 21 20 40 40 H 1.08999 * 110.68470 * 267.49093 * 22 21 20 41 41 H 1.08995 * 111.04138 * 263.38718 * 25 23 22 42 42 H 1.08993 * 111.04260 * 27.33712 * 25 23 22 43 43 H 1.08998 * 110.06183 * 95.16152 * 26 25 23 44 44 H 1.08999 * 110.06434 * 216.67735 * 26 25 23 45 45 H 1.00903 * 111.00277 * 49.00362 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.3907 2.1070 -1.3948 5 1 1.5021 2.6200 0.8024 6 1 3.5943 1.4121 0.5924 7 6 2.0089 -1.2033 -0.0005 8 1 1.4761 -2.1345 0.1241 9 7 3.3706 -1.2087 -0.1593 10 6 3.9959 -0.3310 -1.1518 11 6 4.0922 -1.0530 -2.4710 12 6 5.2169 -1.7989 -2.7701 13 6 5.3031 -2.4652 -3.9783 14 6 4.2693 -2.3770 -4.8916 15 6 3.1468 -1.6268 -4.5946 16 6 3.0585 -0.9645 -3.3845 17 6 4.1342 -2.0213 0.5979 18 8 5.3431 -1.9682 0.5151 19 6 3.4858 -2.9956 1.5472 20 6 2.9968 -4.1048 0.6896 21 7 4.2278 -4.8603 0.2976 22 6 5.3892 -4.2463 1.0164 23 6 4.7441 -3.6276 2.2528 24 1 4.5096 -4.3658 3.0197 25 6 5.3172 -2.3348 2.8327 26 6 4.0234 -1.6254 3.3426 27 7 2.8890 -2.1833 2.5386 28 1 -0.4849 0.8401 -0.0004 29 1 3.3921 0.5684 -1.2730 30 1 4.9951 -0.0551 -0.8147 31 1 6.0264 -1.8646 -2.0582 32 1 6.1802 -3.0510 -4.2104 33 1 4.3386 -2.8939 -5.8373 34 1 2.3392 -1.5575 -5.3083 35 1 2.1816 -0.3780 -3.1526 36 1 2.4970 -3.7088 -0.1944 37 1 2.3195 -4.7483 1.2512 38 1 4.1388 -5.8395 0.5244 39 1 6.1130 -5.0098 1.3011 40 1 5.8596 -3.4783 0.4024 41 1 5.9993 -2.5440 3.6566 42 1 5.8090 -1.7436 2.0602 43 1 3.8723 -1.8389 4.4008 44 1 4.0998 -0.5496 3.1849 45 1 2.3441 -1.4440 2.1205 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160667927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:13 Heat of formation + Delta-G solvation = 100.441639 kcal Electronic energy + Delta-G solvation = -28963.324538 eV Core-core repulsion = 25370.364524 eV Total energy + Delta-G solvation = -3592.960014 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.83034 -38.85702 -36.89774 -35.38186 -34.86925 -32.34952 -31.51074 -30.37504 -29.94685 -27.84744 -26.46847 -25.98633 -24.99824 -22.02780 -21.77844 -21.47311 -20.62706 -20.10393 -18.68478 -17.33128 -16.80600 -16.21160 -15.83711 -15.47809 -15.20001 -14.95271 -14.77926 -14.35029 -14.30489 -13.32843 -13.19346 -13.02558 -12.92190 -12.76536 -12.57211 -12.48537 -12.14645 -11.99735 -11.75259 -11.60140 -11.36921 -11.17074 -11.04654 -10.87787 -10.71395 -10.51269 -10.23819 -10.10419 -9.86705 -9.59130 -9.22583 -8.64181 -8.39854 -8.27095 -8.02293 -7.73385 -7.45221 -6.60252 -4.32503 1.81713 1.92771 2.91335 3.08396 3.09407 3.47341 3.91634 3.98436 4.29172 4.59893 4.70397 4.78967 4.92311 5.32049 5.34729 5.43859 5.45813 5.55729 5.65628 5.66959 5.75330 5.82615 5.89658 5.94382 6.02026 6.06319 6.12139 6.19576 6.20640 6.29259 6.38743 6.48572 6.55063 6.57467 6.65991 6.93039 6.96635 6.97643 7.04413 7.12305 7.22437 7.30562 7.50608 7.51482 7.77604 7.99473 8.07219 8.22294 8.76177 9.13862 9.50450 10.47700 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.011208 B = 0.008450 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.660718 B = 3312.947577 C = 4777.964322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.070 3.930 3 Si 0.880 3.120 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.349 4.349 8 H 0.112 0.888 9 N -0.454 5.454 10 C 0.135 3.865 11 C -0.083 4.083 12 C -0.095 4.095 13 C -0.128 4.128 14 C -0.128 4.128 15 C -0.128 4.128 16 C -0.094 4.094 17 C 0.450 3.550 18 O -0.570 6.570 19 C 0.104 3.896 20 C 0.075 3.925 21 N -0.673 5.673 22 C 0.014 3.986 23 C -0.117 4.117 24 H 0.074 0.926 25 C -0.160 4.160 26 C 0.045 3.955 27 N -0.652 5.652 28 H 0.278 0.722 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.096 0.904 37 H 0.055 0.945 38 H 0.325 0.675 39 H 0.044 0.956 40 H 0.152 0.848 41 H 0.050 0.950 42 H 0.135 0.865 43 H 0.068 0.932 44 H 0.045 0.955 45 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.899 -3.167 -1.592 7.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.139 4.139 3 Si 0.709 3.291 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.188 1.188 7 C -0.476 4.476 8 H 0.129 0.871 9 N -0.172 5.172 10 C 0.013 3.987 11 C -0.085 4.085 12 C -0.113 4.113 13 C -0.146 4.146 14 C -0.146 4.146 15 C -0.146 4.146 16 C -0.113 4.113 17 C 0.240 3.760 18 O -0.457 6.457 19 C 0.006 3.994 20 C -0.055 4.055 21 N -0.301 5.301 22 C -0.113 4.113 23 C -0.138 4.138 24 H 0.093 0.907 25 C -0.197 4.197 26 C -0.083 4.083 27 N -0.290 5.290 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.141 0.859 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.139 0.861 39 H 0.062 0.938 40 H 0.169 0.831 41 H 0.069 0.931 42 H 0.152 0.848 43 H 0.086 0.914 44 H 0.064 0.936 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 7.136 -3.153 -1.842 8.016 hybrid contribution 0.116 1.131 0.366 1.194 sum 7.252 -2.022 -1.476 7.672 Atomic orbital electron populations 1.69647 1.05923 1.28307 1.44926 1.25398 0.95254 0.98400 0.94813 0.86883 0.80440 0.83398 0.78390 1.19896 1.21540 1.18790 1.19216 0.79806 0.95707 1.52864 0.87062 1.43802 1.06990 1.37108 1.29341 1.20644 0.98773 0.92707 0.86563 1.20205 0.94134 0.98647 0.95487 1.21105 0.97905 0.96066 0.96272 1.21014 0.98799 1.00202 0.94548 1.21009 0.94494 0.99856 0.99233 1.21040 0.97910 0.98497 0.97193 1.21107 0.97952 0.99030 0.93163 1.21952 0.87013 0.84940 0.82105 1.89916 1.14932 1.71383 1.69452 1.20641 0.94070 0.93706 0.90949 1.21487 0.92376 0.93439 0.98156 1.63362 1.02326 1.05574 1.58846 1.24057 0.92652 1.00055 0.94524 1.23272 0.96208 0.97100 0.97220 0.90718 1.23531 0.97060 0.97263 1.01883 1.23450 0.89448 0.97432 0.97986 1.60542 1.20523 1.24532 1.23447 0.91167 0.91885 0.90298 0.85915 0.86799 0.86935 0.86697 0.86093 0.88629 0.92666 0.86105 0.93788 0.83132 0.93084 0.84777 0.91383 0.93617 0.80045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.91 13.96 55.50 0.77 -21.13 16 2 C 0.07 1.70 5.47 -17.47 -0.10 1.61 16 3 Si 0.88 19.33 24.60 -169.99 -4.18 15.15 16 4 H -0.27 -5.83 6.93 56.52 0.39 -5.44 16 5 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.26 -5.81 6.65 56.52 0.38 -5.44 16 7 C -0.35 -8.28 6.48 -14.94 -0.10 -8.37 16 8 H 0.11 2.86 6.10 -52.48 -0.32 2.54 16 9 N -0.45 -9.99 2.14 -116.09 -0.25 -10.24 16 10 C 0.14 2.86 3.99 -5.19 -0.02 2.84 16 11 C -0.08 -1.65 5.46 -104.63 -0.57 -2.22 16 12 C -0.09 -1.73 9.70 -39.58 -0.38 -2.12 16 13 C -0.13 -2.04 10.05 -39.58 -0.40 -2.44 16 14 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 15 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 16 C -0.09 -1.79 9.70 -39.58 -0.38 -2.17 16 17 C 0.45 9.45 4.19 -10.98 -0.05 9.41 16 18 O -0.57 -12.04 8.66 5.55 0.05 -11.99 16 19 C 0.10 2.03 1.69 -135.38 -0.23 1.80 16 20 C 0.07 1.42 6.29 -4.48 -0.03 1.39 16 21 N -0.67 -11.69 7.49 -112.05 -0.84 -12.53 16 22 C 0.01 0.25 6.72 -2.45 -0.02 0.23 16 23 C -0.12 -2.07 3.72 -88.47 -0.33 -2.40 16 24 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 25 C -0.16 -2.79 6.14 -25.15 -0.15 -2.95 16 26 C 0.05 0.81 7.19 -0.52 0.00 0.81 16 27 N -0.65 -13.09 7.17 -100.27 -0.72 -13.81 16 28 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 29 H 0.06 1.36 2.73 -51.93 -0.14 1.22 16 30 H 0.08 1.65 7.31 -51.93 -0.38 1.27 16 31 H 0.12 2.26 7.82 -52.49 -0.41 1.85 16 32 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 36 H 0.10 2.06 6.16 -51.93 -0.32 1.74 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.33 4.81 8.94 -39.29 -0.35 4.46 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.15 3.01 4.62 -31.40 -0.14 2.86 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.14 2.64 4.73 -30.72 -0.15 2.49 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.37 8.24 5.90 -39.29 -0.23 8.01 16 LS Contribution 335.32 15.07 5.05 5.05 Total: -1.00 -25.10 335.32 -9.51 -34.61 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: -5.84 Total: 24.32 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -3.55 Total: -9.44 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: -1.03 Total: -57.71 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.05 Total: -11.99 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.18 Total: 15.15 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -25.10 -9.51 -34.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160667927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.051 kcal (2) G-P(sol) polarization free energy of solvation -25.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds