Wall clock time and date at job start Tue Mar 31 2020 12:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99943 * 2 1 4 4 H 1.48501 * 109.47058 * 274.96639 * 3 2 1 5 5 H 1.48493 * 109.47187 * 34.96768 * 3 2 1 6 6 H 1.48499 * 109.46991 * 154.96823 * 3 2 1 7 7 C 1.38947 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99622 * 352.31778 * 7 2 1 9 9 N 1.37094 * 120.00317 * 172.31710 * 7 2 1 10 10 C 1.46504 * 120.00031 * 317.75668 * 9 7 2 11 11 C 1.50696 * 109.46976 * 269.99524 * 10 9 7 12 12 C 1.38235 * 120.00015 * 269.72599 * 11 10 9 13 13 C 1.38237 * 119.99585 * 179.76335 * 12 11 10 14 14 C 1.38233 * 120.00575 * 0.51290 * 13 12 11 15 15 C 1.38239 * 119.99690 * 359.73828 * 14 13 12 16 16 C 1.38234 * 119.99709 * 0.02562 * 15 14 13 17 17 C 1.34781 * 119.99956 * 137.74943 * 9 7 2 18 18 O 1.21293 * 119.99676 * 184.45942 * 17 9 7 19 19 C 1.50697 * 119.99928 * 4.45917 * 17 9 7 20 20 C 1.48486 * 105.12110 * 76.78847 * 19 17 9 21 21 N 1.49661 * 104.92172 * 73.83697 * 20 19 17 22 22 C 1.49749 * 107.76959 * 4.37751 * 21 20 19 23 23 C 1.52573 * 103.14394 * 25.90294 * 22 21 20 24 24 H 1.09001 * 112.73789 * 77.47481 * 23 22 21 25 25 C 1.52836 * 119.47016 * 213.39425 * 23 22 21 26 26 C 1.56116 * 101.39277 * 145.36449 * 25 23 22 27 27 N 1.41383 * 104.58624 * 292.26613 * 19 17 9 28 28 H 0.97000 * 119.99510 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46743 * 29.99504 * 10 9 7 30 30 H 1.09004 * 109.47026 * 149.99298 * 10 9 7 31 31 H 1.08000 * 120.00143 * 0.02562 * 12 11 10 32 32 H 1.08000 * 119.99560 * 180.22850 * 13 12 11 33 33 H 1.07996 * 120.00379 * 179.72575 * 14 13 12 34 34 H 1.07997 * 120.00341 * 179.97438 * 15 14 13 35 35 H 1.08011 * 119.99928 * 179.97438 * 16 15 14 36 36 H 1.08998 * 110.36829 * 314.94539 * 20 19 17 37 37 H 1.09000 * 110.36757 * 192.72859 * 20 19 17 38 38 H 1.00904 * 111.00503 * 126.12049 * 21 20 19 39 39 H 1.08990 * 110.68351 * 144.31408 * 22 21 20 40 40 H 1.08999 * 110.68470 * 267.49093 * 22 21 20 41 41 H 1.08995 * 111.04138 * 263.38718 * 25 23 22 42 42 H 1.08993 * 111.04260 * 27.33712 * 25 23 22 43 43 H 1.08998 * 110.06183 * 95.16152 * 26 25 23 44 44 H 1.08999 * 110.06434 * 216.67735 * 26 25 23 45 45 H 1.00903 * 111.00277 * 49.00362 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.3907 2.1070 -1.3948 5 1 1.5021 2.6200 0.8024 6 1 3.5943 1.4121 0.5924 7 6 2.0089 -1.2033 -0.0005 8 1 1.4761 -2.1345 0.1241 9 7 3.3706 -1.2087 -0.1593 10 6 3.9959 -0.3310 -1.1518 11 6 4.0922 -1.0530 -2.4710 12 6 5.2169 -1.7989 -2.7701 13 6 5.3031 -2.4652 -3.9783 14 6 4.2693 -2.3770 -4.8916 15 6 3.1468 -1.6268 -4.5946 16 6 3.0585 -0.9645 -3.3845 17 6 4.1342 -2.0213 0.5979 18 8 5.3431 -1.9682 0.5151 19 6 3.4858 -2.9956 1.5472 20 6 2.9968 -4.1048 0.6896 21 7 4.2278 -4.8603 0.2976 22 6 5.3892 -4.2463 1.0164 23 6 4.7441 -3.6276 2.2528 24 1 4.5096 -4.3658 3.0197 25 6 5.3172 -2.3348 2.8327 26 6 4.0234 -1.6254 3.3426 27 7 2.8890 -2.1833 2.5386 28 1 -0.4849 0.8401 -0.0004 29 1 3.3921 0.5684 -1.2730 30 1 4.9951 -0.0551 -0.8147 31 1 6.0264 -1.8646 -2.0582 32 1 6.1802 -3.0510 -4.2104 33 1 4.3386 -2.8939 -5.8373 34 1 2.3392 -1.5575 -5.3083 35 1 2.1816 -0.3780 -3.1526 36 1 2.4970 -3.7088 -0.1944 37 1 2.3195 -4.7483 1.2512 38 1 4.1388 -5.8395 0.5244 39 1 6.1130 -5.0098 1.3011 40 1 5.8596 -3.4783 0.4024 41 1 5.9993 -2.5440 3.6566 42 1 5.8090 -1.7436 2.0602 43 1 3.8723 -1.8389 4.4008 44 1 4.0998 -0.5496 3.1849 45 1 2.3441 -1.4440 2.1205 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160667927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:12 Heat of formation + Delta-G solvation = 82.828827 kcal Electronic energy + Delta-G solvation = -28964.088286 eV Core-core repulsion = 25370.364524 eV Total energy + Delta-G solvation = -3593.723763 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.38897 -40.27416 -38.46527 -37.06311 -36.34486 -34.16595 -32.99444 -31.72450 -31.43727 -29.32481 -27.93098 -27.59620 -26.76423 -23.39069 -23.22585 -22.95903 -22.17558 -21.55931 -20.37782 -18.99557 -18.35343 -17.73330 -17.40784 -16.99219 -16.77305 -16.53861 -16.23838 -15.84361 -15.77330 -15.04328 -14.71644 -14.59605 -14.44365 -14.21147 -14.15351 -13.95253 -13.70325 -13.41761 -13.33122 -13.20638 -12.84125 -12.74092 -12.55919 -12.40777 -12.17005 -11.98820 -11.92533 -11.68711 -11.41467 -11.12792 -11.01693 -10.20065 -9.75655 -9.68540 -9.58059 -9.29846 -9.05837 -8.49728 -6.21230 0.45082 0.56696 1.12883 1.25001 1.30721 1.82077 2.09372 2.39809 2.86057 2.94179 3.10113 3.28025 3.39331 3.81489 3.95673 4.02012 4.09478 4.12595 4.19401 4.25759 4.32647 4.37523 4.45378 4.50427 4.55811 4.60244 4.72637 4.77095 4.79461 4.82729 4.92897 5.05798 5.13436 5.20399 5.21145 5.37007 5.53092 5.62286 5.63994 5.65461 5.68672 5.80445 5.98746 6.09040 6.17782 6.30790 6.42810 6.59120 6.92334 7.36843 7.76590 8.61590 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.011208 B = 0.008450 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.660718 B = 3312.947577 C = 4777.964322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.040 3.960 3 Si 0.924 3.076 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.329 4.329 8 H 0.087 0.913 9 N -0.465 5.465 10 C 0.136 3.864 11 C -0.104 4.104 12 C -0.107 4.107 13 C -0.123 4.123 14 C -0.118 4.118 15 C -0.128 4.128 16 C -0.117 4.117 17 C 0.451 3.549 18 O -0.570 6.570 19 C 0.094 3.906 20 C 0.079 3.921 21 N -0.675 5.675 22 C 0.020 3.980 23 C -0.106 4.106 24 H 0.091 0.909 25 C -0.154 4.154 26 C 0.043 3.957 27 N -0.659 5.659 28 H 0.279 0.721 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.144 0.856 33 H 0.152 0.848 34 H 0.140 0.860 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.344 0.656 39 H 0.072 0.928 40 H 0.127 0.873 41 H 0.078 0.922 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.035 0.965 45 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.644 -4.787 -2.083 10.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.166 4.166 3 Si 0.753 3.247 4 H -0.193 1.193 5 H -0.216 1.216 6 H -0.193 1.193 7 C -0.457 4.457 8 H 0.104 0.896 9 N -0.185 5.185 10 C 0.014 3.986 11 C -0.106 4.106 12 C -0.126 4.126 13 C -0.141 4.141 14 C -0.136 4.136 15 C -0.146 4.146 16 C -0.136 4.136 17 C 0.241 3.759 18 O -0.456 6.456 19 C -0.003 4.003 20 C -0.050 4.050 21 N -0.305 5.305 22 C -0.108 4.108 23 C -0.127 4.127 24 H 0.109 0.891 25 C -0.192 4.192 26 C -0.085 4.085 27 N -0.295 5.295 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.133 0.867 32 H 0.162 0.838 33 H 0.170 0.830 34 H 0.158 0.842 35 H 0.120 0.880 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.160 0.840 39 H 0.090 0.910 40 H 0.144 0.856 41 H 0.097 0.903 42 H 0.130 0.870 43 H 0.110 0.890 44 H 0.054 0.946 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 8.917 -4.796 -2.327 10.389 hybrid contribution -0.334 1.526 0.478 1.633 sum 8.583 -3.270 -1.849 9.369 Atomic orbital electron populations 1.69712 1.06951 1.28885 1.47236 1.25767 0.95550 1.00333 0.94912 0.86179 0.79135 0.81005 0.78430 1.19341 1.21638 1.19305 1.18913 0.80513 0.94613 1.51638 0.89590 1.43841 1.06375 1.37884 1.30362 1.20596 0.97986 0.92565 0.87487 1.20143 0.95378 0.99951 0.95084 1.21117 0.97223 0.96782 0.97453 1.21381 1.00032 0.99286 0.93418 1.21447 0.93175 0.98627 1.00374 1.21354 0.99210 0.97607 0.96386 1.21098 0.97417 1.00372 0.94704 1.22294 0.87003 0.84618 0.81982 1.89973 1.14949 1.71224 1.69414 1.20829 0.95025 0.93570 0.90908 1.21303 0.93205 0.93698 0.96822 1.63198 1.01549 1.06586 1.59150 1.23842 0.92896 1.00271 0.93768 1.23307 0.94641 0.97288 0.97458 0.89124 1.23390 0.96964 0.96675 1.02163 1.23577 0.89135 0.96902 0.98923 1.60601 1.21315 1.24135 1.23492 0.91043 0.92847 0.90773 0.86707 0.83790 0.82987 0.84246 0.88038 0.91839 0.91390 0.84046 0.90999 0.85592 0.90316 0.86993 0.89041 0.94638 0.81786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.47 13.96 21.66 0.30 -47.17 16 2 C 0.04 2.00 5.47 84.92 0.46 2.46 16 3 Si 0.92 41.19 24.60 68.60 1.69 42.88 16 4 H -0.27 -11.53 6.93 99.48 0.69 -10.84 16 5 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -12.00 6.65 99.48 0.66 -11.34 16 7 C -0.33 -16.25 6.48 84.04 0.54 -15.71 16 8 H 0.09 4.67 6.10 -2.91 -0.02 4.65 16 9 N -0.46 -21.08 2.14 -639.59 -1.37 -22.45 16 10 C 0.14 5.91 3.99 85.63 0.34 6.25 16 11 C -0.10 -4.19 5.46 -19.87 -0.11 -4.30 16 12 C -0.11 -3.85 9.70 22.27 0.22 -3.64 16 13 C -0.12 -3.63 10.05 22.27 0.22 -3.40 16 14 C -0.12 -3.22 10.05 22.27 0.22 -3.00 16 15 C -0.13 -3.98 10.05 22.27 0.22 -3.76 16 16 C -0.12 -4.52 9.70 22.27 0.22 -4.30 16 17 C 0.45 19.12 4.19 87.66 0.37 19.49 16 18 O -0.57 -24.10 8.66 -3.07 -0.03 -24.13 16 19 C 0.09 3.65 1.69 3.95 0.01 3.66 16 20 C 0.08 2.99 6.29 84.34 0.53 3.52 16 21 N -0.68 -22.28 7.49 -508.42 -3.81 -26.09 16 22 C 0.02 0.64 6.72 85.60 0.58 1.21 16 23 C -0.11 -3.52 3.72 -9.40 -0.04 -3.56 16 24 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 25 C -0.15 -5.10 6.14 31.62 0.19 -4.90 16 26 C 0.04 1.48 7.19 86.81 0.62 2.11 16 27 N -0.66 -26.39 7.17 -471.15 -3.38 -29.77 16 28 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 29 H 0.05 2.39 2.73 -2.39 -0.01 2.39 16 30 H 0.07 3.21 7.31 -2.38 -0.02 3.19 16 31 H 0.11 4.23 7.82 -2.91 -0.02 4.21 16 32 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 33 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 34 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 35 H 0.10 4.22 8.06 -2.90 -0.02 4.19 16 36 H 0.06 2.81 6.16 -2.39 -0.01 2.80 16 37 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.34 9.26 8.94 -89.69 -0.80 8.46 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.13 4.87 4.62 -34.46 -0.16 4.71 16 41 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.11 4.30 4.73 -23.63 -0.11 4.19 16 43 H 0.09 2.75 8.14 -2.39 -0.02 2.74 16 44 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.36 16.23 5.90 -89.69 -0.53 15.70 16 Total: -1.00 -55.52 335.32 -2.59 -58.11 By element: Atomic # 1 Polarization: 57.08 SS G_CDS: -0.60 Total: 56.47 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 4.61 Total: -7.86 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -8.26 Total: -125.48 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.03 Total: -24.13 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 1.69 Total: 42.88 kcal Total: -55.52 -2.59 -58.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160667927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.937 kcal (2) G-P(sol) polarization free energy of solvation -55.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds