Wall clock time and date at job start Tue Mar 31 2020 12:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00186 * 2 1 4 4 H 1.48496 * 109.47328 * 180.02562 * 3 2 1 5 5 H 1.48513 * 109.46978 * 300.00050 * 3 2 1 6 6 H 1.48498 * 109.47192 * 59.99967 * 3 2 1 7 7 C 1.38810 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00418 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99702 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99936 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47203 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47092 * 180.02562 * 11 10 9 13 13 N 1.46507 * 109.47001 * 180.02562 * 12 11 10 14 14 C 1.34778 * 119.99852 * 179.97438 * 13 12 11 15 15 O 1.21596 * 120.00059 * 359.97438 * 14 13 12 16 16 C 1.47517 * 119.99680 * 179.97438 * 14 13 12 17 17 C 1.39794 * 120.06837 * 179.97438 * 16 14 13 18 18 C 1.37609 * 119.93414 * 179.97438 * 17 16 14 19 19 C 1.39219 * 120.06690 * 359.97379 * 18 17 16 20 20 N 1.39048 * 119.93424 * 180.02562 * 19 18 17 21 21 C 1.48220 * 111.00424 * 126.53693 * 20 19 18 22 22 C 1.51116 * 105.43901 * 144.85425 * 21 20 19 23 23 C 1.31121 * 109.37371 * 343.14412 * 22 21 20 24 24 C 1.48222 * 111.00038 * 240.18336 * 20 19 18 25 25 C 1.39220 * 120.13937 * 0.29586 * 19 18 17 26 26 C 1.37614 * 120.06420 * 359.45013 * 25 19 18 27 27 H 0.97008 * 119.99982 * 0.02562 * 1 2 3 28 28 H 0.96999 * 120.00302 * 0.02562 * 9 7 2 29 29 H 1.09006 * 109.46725 * 60.00363 * 10 9 7 30 30 H 1.08999 * 109.47151 * 300.00593 * 10 9 7 31 31 H 1.09002 * 109.46990 * 59.99697 * 11 10 9 32 32 H 1.09010 * 109.46988 * 300.00474 * 11 10 9 33 33 H 1.08992 * 109.47343 * 59.99921 * 12 11 10 34 34 H 1.09005 * 109.46563 * 299.99482 * 12 11 10 35 35 H 0.97001 * 120.00025 * 359.97438 * 13 12 11 36 36 H 1.07998 * 120.03472 * 359.97438 * 17 16 14 37 37 H 1.07999 * 119.96546 * 180.02562 * 18 17 16 38 38 H 1.08991 * 110.27336 * 263.87625 * 21 20 19 39 39 H 1.09004 * 110.26523 * 25.84153 * 21 20 19 40 40 H 1.08010 * 125.27083 * 163.07430 * 22 21 20 41 41 H 1.07995 * 125.24863 * 179.97438 * 23 22 21 42 42 H 1.09005 * 110.26412 * 334.06419 * 24 20 19 43 43 H 1.09005 * 110.27365 * 96.03343 * 24 20 19 44 44 H 1.07995 * 119.96794 * 179.70541 * 25 19 18 45 45 H 1.08004 * 120.03116 * 180.26517 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 6 1.8288 -6.1447 -0.0005 13 7 0.8767 -7.2582 -0.0018 14 6 1.3260 -8.5289 -0.0020 15 8 2.5215 -8.7511 -0.0016 16 6 0.3674 -9.6502 -0.0027 17 6 0.8318 -10.9687 -0.0034 18 6 -0.0650 -12.0125 -0.0035 19 6 -1.4334 -11.7565 -0.0023 20 7 -2.3370 -12.8133 -0.0019 21 6 -3.3075 -12.6821 1.1108 22 6 -4.6131 -13.2186 0.5712 23 6 -4.5547 -13.2696 -0.7377 24 6 -3.2062 -12.7695 -1.2017 25 6 -1.8991 -10.4445 -0.0072 26 6 -1.0073 -9.3964 -0.0018 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3881 -0.0005 29 1 2.6846 -3.7145 0.8895 30 1 2.6848 -3.7145 -0.8905 31 1 0.4375 -4.7617 -0.8914 32 1 0.4367 -4.7621 0.8886 33 1 2.4548 -6.2024 0.8898 34 1 2.4560 -6.2024 -0.8902 35 1 -0.0769 -7.0810 -0.0024 36 1 1.8932 -11.1680 -0.0040 37 1 0.2932 -13.0314 -0.0037 38 1 -2.9820 -13.2721 1.9674 39 1 -3.4178 -11.6353 1.3941 40 1 -5.4611 -13.5149 1.1710 41 1 -5.3483 -13.6141 -1.3840 42 1 -3.2892 -11.7472 -1.5707 43 1 -2.8082 -13.4203 -1.9804 44 1 -2.9612 -10.2490 -0.0110 45 1 -1.3692 -8.3788 -0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166492761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:52 Heat of formation + Delta-G solvation = 41.335728 kcal Electronic energy + Delta-G solvation = -24232.973629 eV Core-core repulsion = 20637.450590 eV Total energy + Delta-G solvation = -3595.523039 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.13042 -39.91515 -37.95707 -36.06271 -34.43785 -33.40630 -32.09811 -31.36386 -29.93651 -28.95215 -28.87512 -25.52408 -24.14103 -23.14746 -22.68591 -21.64258 -21.20604 -20.25442 -19.92764 -18.40668 -17.49257 -16.93957 -16.68303 -15.79999 -15.69748 -15.27335 -15.01802 -14.68892 -14.49082 -14.30360 -14.19993 -13.77395 -13.50579 -13.38172 -13.29883 -12.99950 -12.82499 -12.58799 -12.54142 -12.18564 -11.83455 -11.74289 -11.59764 -10.98571 -10.94795 -10.80332 -10.64922 -10.21598 -10.10997 -9.97129 -9.72324 -9.42622 -9.23595 -8.98139 -8.90194 -8.89507 -6.95131 -5.79000 -3.07877 0.38547 0.96440 1.60996 2.58754 3.06016 3.31529 3.42622 3.48474 3.50729 3.50942 4.11649 4.29252 4.37656 4.44376 4.56276 4.58334 4.80514 4.91631 4.93399 4.97561 5.05763 5.09095 5.14810 5.19069 5.28394 5.40106 5.56004 5.56501 5.60114 5.73362 5.81354 5.86680 5.92625 5.93363 6.01499 6.03713 6.17005 6.26917 6.28858 6.29683 6.40894 6.76759 6.81058 6.82780 7.39830 7.69428 8.09400 8.39980 9.51254 10.08163 10.42820 11.44092 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023114 B = 0.001827 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.091143 B =15323.637453 C =16316.197561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.138 4.138 12 C 0.122 3.878 13 N -0.722 5.722 14 C 0.555 3.445 15 O -0.538 6.538 16 C -0.133 4.133 17 C -0.052 4.052 18 C -0.100 4.100 19 C 0.098 3.902 20 N -0.472 5.472 21 C 0.052 3.948 22 C -0.168 4.168 23 C -0.168 4.168 24 C 0.054 3.946 25 C -0.159 4.159 26 C -0.074 4.074 27 H 0.255 0.745 28 H 0.383 0.617 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.399 0.601 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.066 0.934 43 H 0.092 0.908 44 H 0.127 0.873 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.723 -30.254 -0.154 31.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C -0.001 4.001 13 N -0.373 5.373 14 C 0.342 3.658 15 O -0.416 6.416 16 C -0.136 4.136 17 C -0.071 4.071 18 C -0.119 4.119 19 C 0.003 3.997 20 N -0.193 5.193 21 C -0.074 4.074 22 C -0.186 4.186 23 C -0.186 4.186 24 C -0.071 4.071 25 C -0.179 4.179 26 C -0.094 4.094 27 H 0.064 0.936 28 H 0.217 0.783 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.235 0.765 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.145 0.855 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.363 -30.758 -0.121 31.875 hybrid contribution -0.990 1.834 -0.039 2.084 sum -9.353 -28.924 -0.160 30.399 Atomic orbital electron populations 1.69669 1.05145 1.25574 1.57944 1.24758 0.95571 0.97789 1.03013 0.86090 0.78824 0.83949 0.77182 1.20486 1.21842 1.21838 1.19302 0.91164 0.84101 1.42494 0.90997 1.42343 1.05859 0.99996 1.89612 1.20523 0.93254 0.85144 0.98281 1.21954 0.99624 0.93328 1.02731 1.21405 0.91675 0.84369 1.02695 1.46014 1.10830 1.05696 1.74792 1.18176 0.88146 0.82843 0.76677 1.90792 1.16160 1.84828 1.49852 1.20075 0.93303 0.94226 1.05987 1.21266 1.00851 0.90586 0.94440 1.20972 0.90972 0.99812 1.00112 1.19186 0.93194 0.88774 0.98497 1.63111 1.13249 1.39652 1.03327 1.22257 0.89209 1.00907 0.95007 1.23628 0.98235 1.00347 0.96380 1.23623 0.97796 1.00506 0.96664 1.22235 0.90192 1.01201 0.93521 1.21560 1.00162 0.92939 1.03215 1.21200 0.91973 0.99356 0.96824 0.93557 0.78320 0.95982 0.95987 0.91269 0.91275 0.91107 0.91117 0.76524 0.84053 0.84486 0.89027 0.91462 0.84293 0.84325 0.91572 0.89014 0.85487 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.73 -18.65 5.60 -59.91 -0.34 -18.98 16 10 C 0.16 3.10 6.26 -4.04 -0.03 3.08 16 11 C -0.14 -2.09 5.44 -26.73 -0.15 -2.24 16 12 C 0.12 1.66 5.67 -4.04 -0.02 1.64 16 13 N -0.72 -8.55 5.51 -61.35 -0.34 -8.88 16 14 C 0.55 7.32 7.76 -12.48 -0.10 7.23 16 15 O -0.54 -8.99 16.34 5.28 0.09 -8.91 16 16 C -0.13 -1.41 5.88 -104.95 -0.62 -2.03 16 17 C -0.05 -0.51 9.58 -39.23 -0.38 -0.89 16 18 C -0.10 -0.86 9.95 -39.45 -0.39 -1.25 16 19 C 0.10 0.82 4.90 -83.86 -0.41 0.41 16 20 N -0.47 -3.66 5.56 -171.17 -0.95 -4.61 16 21 C 0.05 0.34 6.42 -4.04 -0.03 0.31 16 22 C -0.17 -0.90 10.96 -35.85 -0.39 -1.30 16 23 C -0.17 -0.90 10.95 -35.85 -0.39 -1.30 16 24 C 0.05 0.35 6.46 -4.04 -0.03 0.33 16 25 C -0.16 -1.25 7.64 -39.44 -0.30 -1.55 16 26 C -0.07 -0.63 9.53 -39.23 -0.37 -1.01 16 27 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.38 10.11 7.67 -40.82 -0.31 9.79 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.40 3.71 6.49 -40.82 -0.26 3.45 16 36 H 0.14 1.39 7.64 -52.49 -0.40 0.99 16 37 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.43 6.30 -51.93 -0.33 0.10 16 40 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 41 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 42 H 0.07 0.43 6.72 -51.93 -0.35 0.08 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.13 0.82 7.01 -52.49 -0.37 0.46 16 45 H 0.13 0.86 6.39 -52.48 -0.34 0.52 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -33.74 373.50 -10.61 -44.35 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.55 Total: 7.53 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -3.85 Total: -6.04 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: -0.90 Total: -60.04 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.74 -10.61 -44.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166492761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.685 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds