Wall clock time and date at job start Tue Mar 31 2020 12:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00186 * 2 1 4 4 H 1.48496 * 109.47328 * 180.02562 * 3 2 1 5 5 H 1.48513 * 109.46978 * 300.00050 * 3 2 1 6 6 H 1.48498 * 109.47192 * 59.99967 * 3 2 1 7 7 C 1.38810 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00418 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99702 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99936 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47203 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47092 * 180.02562 * 11 10 9 13 13 N 1.46507 * 109.47001 * 180.02562 * 12 11 10 14 14 C 1.34778 * 119.99852 * 179.97438 * 13 12 11 15 15 O 1.21596 * 120.00059 * 359.97438 * 14 13 12 16 16 C 1.47517 * 119.99680 * 179.97438 * 14 13 12 17 17 C 1.39794 * 120.06837 * 179.97438 * 16 14 13 18 18 C 1.37609 * 119.93414 * 179.97438 * 17 16 14 19 19 C 1.39219 * 120.06690 * 359.97379 * 18 17 16 20 20 N 1.39048 * 119.93424 * 180.02562 * 19 18 17 21 21 C 1.48220 * 111.00424 * 126.53693 * 20 19 18 22 22 C 1.51116 * 105.43901 * 144.85425 * 21 20 19 23 23 C 1.31121 * 109.37371 * 343.14412 * 22 21 20 24 24 C 1.48222 * 111.00038 * 240.18336 * 20 19 18 25 25 C 1.39220 * 120.13937 * 0.29586 * 19 18 17 26 26 C 1.37614 * 120.06420 * 359.45013 * 25 19 18 27 27 H 0.97008 * 119.99982 * 0.02562 * 1 2 3 28 28 H 0.96999 * 120.00302 * 0.02562 * 9 7 2 29 29 H 1.09006 * 109.46725 * 60.00363 * 10 9 7 30 30 H 1.08999 * 109.47151 * 300.00593 * 10 9 7 31 31 H 1.09002 * 109.46990 * 59.99697 * 11 10 9 32 32 H 1.09010 * 109.46988 * 300.00474 * 11 10 9 33 33 H 1.08992 * 109.47343 * 59.99921 * 12 11 10 34 34 H 1.09005 * 109.46563 * 299.99482 * 12 11 10 35 35 H 0.97001 * 120.00025 * 359.97438 * 13 12 11 36 36 H 1.07998 * 120.03472 * 359.97438 * 17 16 14 37 37 H 1.07999 * 119.96546 * 180.02562 * 18 17 16 38 38 H 1.08991 * 110.27336 * 263.87625 * 21 20 19 39 39 H 1.09004 * 110.26523 * 25.84153 * 21 20 19 40 40 H 1.08010 * 125.27083 * 163.07430 * 22 21 20 41 41 H 1.07995 * 125.24863 * 179.97438 * 23 22 21 42 42 H 1.09005 * 110.26412 * 334.06419 * 24 20 19 43 43 H 1.09005 * 110.27365 * 96.03343 * 24 20 19 44 44 H 1.07995 * 119.96794 * 179.70541 * 25 19 18 45 45 H 1.08004 * 120.03116 * 180.26517 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 6 1.8288 -6.1447 -0.0005 13 7 0.8767 -7.2582 -0.0018 14 6 1.3260 -8.5289 -0.0020 15 8 2.5215 -8.7511 -0.0016 16 6 0.3674 -9.6502 -0.0027 17 6 0.8318 -10.9687 -0.0034 18 6 -0.0650 -12.0125 -0.0035 19 6 -1.4334 -11.7565 -0.0023 20 7 -2.3370 -12.8133 -0.0019 21 6 -3.3075 -12.6821 1.1108 22 6 -4.6131 -13.2186 0.5712 23 6 -4.5547 -13.2696 -0.7377 24 6 -3.2062 -12.7695 -1.2017 25 6 -1.8991 -10.4445 -0.0072 26 6 -1.0073 -9.3964 -0.0018 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3881 -0.0005 29 1 2.6846 -3.7145 0.8895 30 1 2.6848 -3.7145 -0.8905 31 1 0.4375 -4.7617 -0.8914 32 1 0.4367 -4.7621 0.8886 33 1 2.4548 -6.2024 0.8898 34 1 2.4560 -6.2024 -0.8902 35 1 -0.0769 -7.0810 -0.0024 36 1 1.8932 -11.1680 -0.0040 37 1 0.2932 -13.0314 -0.0037 38 1 -2.9820 -13.2721 1.9674 39 1 -3.4178 -11.6353 1.3941 40 1 -5.4611 -13.5149 1.1710 41 1 -5.3483 -13.6141 -1.3840 42 1 -3.2892 -11.7472 -1.5707 43 1 -2.8082 -13.4203 -1.9804 44 1 -2.9612 -10.2490 -0.0110 45 1 -1.3692 -8.3788 -0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166492761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:51 Heat of formation + Delta-G solvation = 18.737045 kcal Electronic energy + Delta-G solvation = -24233.953582 eV Core-core repulsion = 20637.450590 eV Total energy + Delta-G solvation = -3596.502991 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.77501 -40.81101 -38.67897 -37.51367 -35.99006 -34.16238 -33.63582 -32.19733 -31.34800 -29.81364 -29.41309 -27.04266 -25.19759 -24.13369 -23.84050 -22.60365 -22.42628 -21.17316 -20.33329 -19.41867 -18.92218 -18.06316 -17.53887 -16.86694 -16.79699 -16.39273 -15.95355 -15.71601 -15.68027 -15.34641 -15.28363 -14.83793 -14.76479 -14.35607 -14.15288 -14.06741 -13.79846 -13.36503 -13.28141 -13.14183 -12.93131 -12.84017 -12.61647 -12.43656 -12.32297 -12.25144 -12.07586 -12.04547 -11.80518 -11.13939 -10.96510 -10.64764 -10.25751 -10.10000 -9.74702 -9.39609 -9.02620 -7.97681 -5.26694 -0.36743 0.29619 1.22219 1.47674 1.48097 1.58577 1.70070 2.05622 2.55530 2.71582 2.76764 3.36459 3.60421 3.68042 3.71565 3.80403 3.85699 3.89830 4.06878 4.20156 4.25157 4.30318 4.43897 4.45997 4.50849 4.52638 4.53966 4.68380 4.70796 4.71611 4.85529 4.91499 4.97908 5.06330 5.23320 5.24837 5.30275 5.30929 5.36322 5.38551 5.43921 5.48689 5.62038 5.87925 6.22355 6.25376 6.44927 7.10555 7.31873 8.06396 8.30321 9.26005 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023114 B = 0.001827 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.091143 B =15323.637453 C =16316.197561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.076 4.076 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.249 4.249 8 H 0.075 0.925 9 N -0.746 5.746 10 C 0.151 3.849 11 C -0.119 4.119 12 C 0.132 3.868 13 N -0.711 5.711 14 C 0.554 3.446 15 O -0.581 6.581 16 C -0.151 4.151 17 C -0.058 4.058 18 C -0.104 4.104 19 C 0.102 3.898 20 N -0.485 5.485 21 C 0.047 3.953 22 C -0.170 4.170 23 C -0.170 4.170 24 C 0.049 3.951 25 C -0.157 4.157 26 C -0.067 4.067 27 H 0.252 0.748 28 H 0.376 0.624 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.414 0.586 36 H 0.134 0.866 37 H 0.147 0.853 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.145 0.855 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.884 -31.022 -0.168 32.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.381 4.381 8 H 0.093 0.907 9 N -0.390 5.390 10 C 0.024 3.976 11 C -0.157 4.157 12 C 0.008 3.992 13 N -0.363 5.363 14 C 0.343 3.657 15 O -0.462 6.462 16 C -0.154 4.154 17 C -0.078 4.078 18 C -0.122 4.122 19 C 0.007 3.993 20 N -0.206 5.206 21 C -0.079 4.079 22 C -0.188 4.188 23 C -0.188 4.188 24 C -0.076 4.076 25 C -0.177 4.177 26 C -0.087 4.087 27 H 0.061 0.939 28 H 0.208 0.792 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.251 0.749 36 H 0.152 0.848 37 H 0.165 0.835 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.175 0.825 41 H 0.175 0.825 42 H 0.085 0.915 43 H 0.110 0.890 44 H 0.163 0.837 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.530 -31.553 -0.135 32.961 hybrid contribution -0.644 1.954 -0.033 2.058 sum -10.174 -29.599 -0.169 31.299 Atomic orbital electron populations 1.69809 1.06544 1.26124 1.59412 1.25587 0.96495 1.01157 1.03554 0.85055 0.78190 0.79635 0.76758 1.19159 1.21878 1.21871 1.19692 0.91597 0.85417 1.41362 0.90684 1.42540 1.05739 1.01137 1.89537 1.20683 0.94087 0.84716 0.98066 1.21708 0.98526 0.92073 1.03368 1.21148 0.91644 0.84180 1.02213 1.45847 1.11348 1.04939 1.74203 1.18559 0.87996 0.83504 0.75634 1.90765 1.18025 1.85423 1.52004 1.19938 0.93727 0.93415 1.08330 1.21276 1.00841 0.90860 0.94818 1.21067 0.91130 0.99945 1.00083 1.19344 0.93253 0.89359 0.97314 1.63122 1.13860 1.39380 1.04256 1.22331 0.89630 1.01187 0.94712 1.23792 0.98178 1.00261 0.96588 1.23785 0.97593 1.00489 0.96981 1.22303 0.90752 1.01404 0.93124 1.21737 1.00948 0.92478 1.02495 1.21379 0.90964 1.00625 0.95705 0.93890 0.79210 0.95935 0.95939 0.90620 0.90628 0.91687 0.91697 0.74853 0.84790 0.83498 0.89044 0.91283 0.82504 0.82542 0.91510 0.88980 0.83736 0.83301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.86 13.06 21.65 0.28 -58.58 16 2 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 3 Si 0.97 46.14 29.55 68.60 2.03 48.17 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 6 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.75 -37.78 5.60 -343.44 -1.92 -39.70 16 10 C 0.15 5.93 6.26 86.38 0.54 6.47 16 11 C -0.12 -3.45 5.44 30.59 0.17 -3.28 16 12 C 0.13 3.50 5.67 86.38 0.49 3.99 16 13 N -0.71 -16.04 5.51 -466.27 -2.57 -18.61 16 14 C 0.55 14.49 7.76 86.69 0.67 15.16 16 15 O -0.58 -19.78 16.34 -4.02 -0.07 -19.85 16 16 C -0.15 -3.12 5.88 -20.08 -0.12 -3.24 16 17 C -0.06 -1.16 9.58 22.50 0.22 -0.94 16 18 C -0.10 -1.72 9.95 22.36 0.22 -1.50 16 19 C 0.10 1.57 4.90 38.47 0.19 1.76 16 20 N -0.48 -6.77 5.56 -695.47 -3.87 -10.63 16 21 C 0.05 0.53 6.42 85.43 0.55 1.08 16 22 C -0.17 -1.46 10.96 25.66 0.28 -1.17 16 23 C -0.17 -1.46 10.95 25.66 0.28 -1.18 16 24 C 0.05 0.56 6.46 85.44 0.55 1.11 16 25 C -0.16 -2.16 7.64 22.36 0.17 -1.99 16 26 C -0.07 -1.03 9.53 22.50 0.21 -0.82 16 27 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 28 H 0.38 19.85 7.67 -92.71 -0.71 19.13 16 29 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.41 6.88 6.49 -92.71 -0.60 6.28 16 36 H 0.13 2.77 7.64 -2.91 -0.02 2.75 16 37 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 38 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 0.74 6.30 -2.38 -0.02 0.73 16 40 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 41 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 42 H 0.07 0.74 6.72 -2.38 -0.02 0.72 16 43 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 44 H 0.14 1.49 7.01 -2.91 -0.02 1.47 16 45 H 0.15 1.58 6.39 -2.91 -0.02 1.57 16 Total: -1.00 -71.70 373.50 -0.68 -72.39 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -0.30 Total: 28.42 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 5.73 Total: -1.60 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -8.08 Total: -127.53 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.07 Total: -19.85 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -71.70 -0.68 -72.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166492761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.125 kcal (2) G-P(sol) polarization free energy of solvation -71.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds