Wall clock time and date at job start Tue Mar 31 2020 11:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.34944 * 116.99737 * 2 1 4 4 O 1.21658 * 119.99979 * 0.02562 * 3 2 1 5 5 C 1.41709 * 119.99980 * 180.02562 * 3 2 1 6 6 C 1.35161 * 119.99916 * 173.17935 * 5 3 2 7 7 C 1.46871 * 120.00044 * 348.64431 * 6 5 3 8 8 C 1.40053 * 120.09446 * 315.76284 * 7 6 5 9 9 C 1.37089 * 119.90103 * 180.02562 * 8 7 6 10 10 C 1.39250 * 120.09595 * 359.97438 * 9 8 7 11 11 N 1.39094 * 119.90112 * 180.02562 * 10 9 8 12 12 C 1.46503 * 119.99927 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.41072 * 324.85693 * 12 11 10 14 14 C 1.53008 * 109.33817 * 84.48691 * 12 11 10 15 15 C 1.53230 * 109.37841 * 183.47595 * 14 12 11 16 16 C 1.51265 * 108.69871 * 305.66339 * 15 14 12 17 17 C 1.37878 * 120.85167 * 231.23560 * 16 15 14 18 18 N 1.31517 * 119.99749 * 357.26666 * 17 16 15 19 19 Si 1.86804 * 120.00281 * 177.27288 * 17 16 15 20 20 H 1.48499 * 109.46980 * 5.79536 * 19 17 16 21 21 H 1.48497 * 109.47140 * 125.80140 * 19 17 16 22 22 H 1.48502 * 109.46421 * 245.80007 * 19 17 16 23 23 C 1.51264 * 118.30161 * 51.24666 * 16 15 14 24 24 C 1.52956 * 109.41505 * 205.00009 * 12 11 10 25 25 C 1.39250 * 120.19331 * 0.28852 * 10 9 8 26 26 C 1.37086 * 120.09840 * 359.45303 * 25 10 9 27 27 H 1.09005 * 109.46971 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47633 * 300.00147 * 1 2 3 29 29 H 1.08996 * 109.47281 * 60.00697 * 1 2 3 30 30 H 1.08001 * 119.99892 * 353.17565 * 5 3 2 31 31 H 1.08001 * 119.99561 * 168.64352 * 6 5 3 32 32 H 1.08003 * 120.05119 * 0.02562 * 8 7 6 33 33 H 1.07996 * 119.95139 * 180.02562 * 9 8 7 34 34 H 0.96996 * 120.00475 * 359.97438 * 11 10 9 35 35 H 1.08996 * 109.34012 * 63.59847 * 14 12 11 36 36 H 1.09001 * 109.65023 * 303.54396 * 14 12 11 37 37 H 1.08997 * 109.62990 * 185.84641 * 15 14 12 38 38 H 1.08999 * 109.62530 * 65.47091 * 15 14 12 39 39 H 0.97000 * 119.99827 * 180.02562 * 18 17 16 40 40 H 1.09000 * 109.62732 * 68.37351 * 23 16 15 41 41 H 1.09002 * 109.63165 * 188.93972 * 23 16 15 42 42 H 1.08996 * 109.48219 * 56.38088 * 24 12 11 43 43 H 1.09007 * 109.47727 * 296.34247 * 24 12 11 44 44 H 1.08000 * 119.95485 * 179.70860 * 25 10 9 45 45 H 1.08001 * 120.05535 * 180.27353 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0415 1.2024 0.0000 4 8 1.3789 2.2227 0.0005 5 6 3.4567 1.2766 -0.0005 6 6 4.0706 2.4727 -0.1396 7 6 3.2947 3.6546 -0.5373 8 6 2.3566 3.5629 -1.5732 9 6 1.6349 4.6687 -1.9415 10 6 1.8331 5.8817 -1.2870 11 7 1.0982 7.0010 -1.6636 12 6 1.3045 8.2781 -0.9760 13 1 1.5174 8.0924 0.0767 14 6 2.4902 9.0088 -1.6096 15 6 2.7615 10.3036 -0.8363 16 6 1.4840 11.1117 -0.7803 17 6 1.4695 12.4382 -1.1560 18 7 2.5860 13.0313 -1.5184 19 14 -0.1360 13.3932 -1.1502 20 1 -1.2125 12.5481 -0.5737 21 1 0.0216 14.6215 -0.3307 22 1 -0.4933 13.7689 -2.5417 23 6 0.2229 10.4274 -0.3013 24 6 0.0402 9.1304 -1.0965 25 6 2.7686 5.9787 -0.2601 26 6 3.4909 4.8767 0.1183 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 4.0446 0.3774 0.1102 31 1 5.1318 2.5593 0.0418 32 1 2.2021 2.6223 -2.0811 33 1 0.9111 4.5988 -2.7399 34 1 0.4492 6.9360 -2.3815 35 1 2.2548 9.2474 -2.6467 36 1 3.3743 8.3723 -1.5744 37 1 3.5361 10.8780 -1.3442 38 1 3.0878 10.0640 0.1758 39 1 2.5758 13.9646 -1.7824 40 1 0.3123 10.1964 0.7602 41 1 -0.6336 11.0813 -0.4655 42 1 -0.8105 8.5770 -0.6991 43 1 -0.1387 9.3690 -2.1450 44 1 2.9225 6.9225 0.2418 45 1 4.2131 4.9517 0.9177 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167845754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:40 Heat of formation + Delta-G solvation = -38.169978 kcal Electronic energy + Delta-G solvation = -25744.557074 eV Core-core repulsion = 22113.293658 eV Total energy + Delta-G solvation = -3631.263416 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.75374 -39.31231 -37.56419 -36.53177 -34.67246 -33.17473 -31.68304 -30.77156 -29.66079 -29.04727 -27.79372 -26.51411 -23.91517 -22.91293 -21.92746 -21.56020 -20.97998 -19.65067 -19.25313 -17.94963 -17.19362 -16.55664 -16.47605 -16.07222 -15.58112 -14.75938 -14.48751 -14.40494 -13.90181 -13.74258 -13.45589 -13.44762 -13.08655 -13.02525 -12.89390 -12.67163 -12.33163 -12.17700 -12.10648 -11.66019 -11.38823 -11.19862 -11.00271 -10.81965 -10.80103 -10.73982 -10.48685 -10.19181 -10.03660 -9.85039 -9.39058 -9.25349 -8.94950 -8.61209 -8.50699 -8.48605 -6.84633 -6.13497 -4.05089 0.60152 1.81819 2.10257 2.88433 3.03801 3.22226 3.30655 3.32788 3.85974 4.19676 4.33954 4.79184 4.86636 4.98688 5.04525 5.09934 5.14089 5.18063 5.25411 5.38722 5.56713 5.62716 5.75282 5.85230 5.93460 5.96211 6.05635 6.14044 6.27150 6.40030 6.43448 6.54683 6.64752 6.68018 6.72646 6.75446 6.85380 6.93750 7.01526 7.06975 7.20413 7.34634 7.59945 7.69311 7.76952 7.82445 7.83082 8.11950 8.35218 8.93485 9.50443 10.95603 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.030107 B = 0.002597 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.789661 B =10778.491823 C =11339.266440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.362 6.362 3 C 0.489 3.511 4 O -0.490 6.490 5 C -0.246 4.246 6 C 0.045 3.955 7 C -0.179 4.179 8 C 0.011 3.989 9 C -0.219 4.219 10 C 0.256 3.744 11 N -0.732 5.732 12 C 0.156 3.844 13 H 0.070 0.930 14 C -0.119 4.119 15 C 0.011 3.989 16 C -0.488 4.488 17 C 0.075 3.925 18 N -0.888 5.888 19 Si 0.880 3.120 20 H -0.255 1.255 21 H -0.285 1.285 22 H -0.283 1.283 23 C -0.024 4.024 24 C -0.113 4.113 25 C -0.215 4.215 26 C -0.034 4.034 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.393 0.607 35 H 0.050 0.950 36 H 0.035 0.965 37 H 0.057 0.943 38 H 0.004 0.996 39 H 0.264 0.736 40 H 0.018 0.982 41 H 0.045 0.955 42 H 0.037 0.963 43 H 0.054 0.946 44 H 0.127 0.873 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.240 -22.553 1.129 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.336 3.664 4 O -0.379 6.379 5 C -0.265 4.265 6 C 0.026 3.974 7 C -0.181 4.181 8 C -0.008 4.008 9 C -0.242 4.242 10 C 0.147 3.853 11 N -0.355 5.355 12 C 0.053 3.947 13 H 0.088 0.912 14 C -0.158 4.158 15 C -0.027 4.027 16 C -0.507 4.507 17 C -0.127 4.127 18 N -0.526 5.526 19 Si 0.708 3.292 20 H -0.180 1.180 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.062 4.062 24 C -0.151 4.151 25 C -0.238 4.238 26 C -0.053 4.053 27 H 0.114 0.886 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.122 0.878 33 H 0.132 0.868 34 H 0.227 0.773 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.022 0.978 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.144 0.856 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.383 -21.855 1.166 21.890 hybrid contribution -1.287 0.487 -0.378 1.427 sum -1.670 -21.369 0.788 21.448 Atomic orbital electron populations 1.22792 0.77526 1.03113 1.02330 1.86213 1.22873 1.34007 1.84896 1.20223 0.90516 0.81312 0.74324 1.91035 1.67357 1.34595 1.44887 1.21170 0.91216 0.99600 1.14517 1.22584 0.99035 0.90900 0.84872 1.18480 1.03646 0.93328 1.02682 1.20462 0.90781 0.96038 0.93528 1.20225 1.06217 0.92460 1.05278 1.18060 0.89225 0.86764 0.91236 1.45287 1.42469 1.08191 1.39563 1.21081 0.96978 0.80898 0.95780 0.91191 1.22072 0.95130 0.98219 1.00356 1.19349 0.97408 0.91331 0.94562 1.20038 0.93078 0.94715 1.42893 1.24864 0.96248 0.96977 0.94641 1.69856 1.26201 1.11888 1.44647 0.86762 0.84852 0.79610 0.77984 1.17976 1.21135 1.20958 1.19962 0.97777 0.93074 0.95391 1.21835 0.94306 0.97736 1.01237 1.20493 1.01657 0.99875 1.01768 1.20740 0.96775 0.90910 0.96871 0.88576 0.92358 0.92364 0.84493 0.84500 0.87837 0.86842 0.77283 0.93166 0.94642 0.92419 0.97799 0.92633 0.96390 0.93647 0.94467 0.92696 0.85553 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.45 101.05 1.06 1.37 16 2 O -0.36 -3.97 10.46 -41.16 -0.43 -4.40 16 3 C 0.49 5.98 6.77 32.06 0.22 6.20 16 4 O -0.49 -7.38 11.84 -19.39 -0.23 -7.61 16 5 C -0.25 -2.41 9.85 -39.35 -0.39 -2.80 16 6 C 0.04 0.44 9.79 -37.19 -0.36 0.08 16 7 C -0.18 -2.38 4.47 -105.04 -0.47 -2.84 16 8 C 0.01 0.15 6.62 -39.32 -0.26 -0.11 16 9 C -0.22 -3.25 9.85 -39.62 -0.39 -3.64 16 10 C 0.26 4.13 6.63 -83.81 -0.56 3.58 16 11 N -0.73 -11.95 5.22 -52.16 -0.27 -12.22 16 12 C 0.16 2.92 2.04 -67.95 -0.14 2.78 16 13 H 0.07 1.36 6.48 -51.93 -0.34 1.02 16 14 C -0.12 -2.48 5.40 -26.61 -0.14 -2.62 16 15 C 0.01 0.28 5.95 -27.49 -0.16 0.12 16 16 C -0.49 -12.53 5.52 -98.93 -0.55 -13.07 16 17 C 0.08 2.02 5.46 -17.82 -0.10 1.92 16 18 N -0.89 -25.27 12.74 55.43 0.71 -24.56 16 19 Si 0.88 20.38 28.00 -169.99 -4.76 15.62 16 20 H -0.25 -5.59 5.46 56.52 0.31 -5.28 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.02 -0.54 5.61 -27.49 -0.15 -0.70 16 24 C -0.11 -2.19 5.41 -26.64 -0.14 -2.33 16 25 C -0.22 -3.45 8.71 -39.62 -0.35 -3.79 16 26 C -0.03 -0.47 9.76 -39.32 -0.38 -0.86 16 27 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 29 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 30 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.10 1.34 7.08 -52.48 -0.37 0.97 16 33 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 34 H 0.39 5.77 8.60 -40.82 -0.35 5.42 16 35 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.03 0.70 7.62 -51.93 -0.40 0.31 16 37 H 0.06 1.56 7.09 -51.93 -0.37 1.19 16 38 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 1.02 4.29 -51.93 -0.22 0.80 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16 44 H 0.13 2.11 6.05 -52.49 -0.32 1.79 16 45 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 359.07 15.07 5.41 5.41 Total: -1.00 -29.89 359.07 -9.51 -39.40 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.66 Total: 5.09 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -3.27 Total: -16.72 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.43 Total: -36.79 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -0.66 Total: -12.01 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.76 Total: 15.62 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.89 -9.51 -39.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.228 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds