Wall clock time and date at job start Tue Mar 31 2020 11:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.34944 * 116.99737 * 2 1 4 4 O 1.21658 * 119.99979 * 0.02562 * 3 2 1 5 5 C 1.41709 * 119.99980 * 180.02562 * 3 2 1 6 6 C 1.35161 * 119.99916 * 173.17935 * 5 3 2 7 7 C 1.46871 * 120.00044 * 348.64431 * 6 5 3 8 8 C 1.40053 * 120.09446 * 315.76284 * 7 6 5 9 9 C 1.37089 * 119.90103 * 180.02562 * 8 7 6 10 10 C 1.39250 * 120.09595 * 359.97438 * 9 8 7 11 11 N 1.39094 * 119.90112 * 180.02562 * 10 9 8 12 12 C 1.46503 * 119.99927 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.41072 * 324.85693 * 12 11 10 14 14 C 1.53008 * 109.33817 * 84.48691 * 12 11 10 15 15 C 1.53230 * 109.37841 * 183.47595 * 14 12 11 16 16 C 1.51265 * 108.69871 * 305.66339 * 15 14 12 17 17 C 1.37878 * 120.85167 * 231.23560 * 16 15 14 18 18 N 1.31517 * 119.99749 * 357.26666 * 17 16 15 19 19 Si 1.86804 * 120.00281 * 177.27288 * 17 16 15 20 20 H 1.48499 * 109.46980 * 5.79536 * 19 17 16 21 21 H 1.48497 * 109.47140 * 125.80140 * 19 17 16 22 22 H 1.48502 * 109.46421 * 245.80007 * 19 17 16 23 23 C 1.51264 * 118.30161 * 51.24666 * 16 15 14 24 24 C 1.52956 * 109.41505 * 205.00009 * 12 11 10 25 25 C 1.39250 * 120.19331 * 0.28852 * 10 9 8 26 26 C 1.37086 * 120.09840 * 359.45303 * 25 10 9 27 27 H 1.09005 * 109.46971 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47633 * 300.00147 * 1 2 3 29 29 H 1.08996 * 109.47281 * 60.00697 * 1 2 3 30 30 H 1.08001 * 119.99892 * 353.17565 * 5 3 2 31 31 H 1.08001 * 119.99561 * 168.64352 * 6 5 3 32 32 H 1.08003 * 120.05119 * 0.02562 * 8 7 6 33 33 H 1.07996 * 119.95139 * 180.02562 * 9 8 7 34 34 H 0.96996 * 120.00475 * 359.97438 * 11 10 9 35 35 H 1.08996 * 109.34012 * 63.59847 * 14 12 11 36 36 H 1.09001 * 109.65023 * 303.54396 * 14 12 11 37 37 H 1.08997 * 109.62990 * 185.84641 * 15 14 12 38 38 H 1.08999 * 109.62530 * 65.47091 * 15 14 12 39 39 H 0.97000 * 119.99827 * 180.02562 * 18 17 16 40 40 H 1.09000 * 109.62732 * 68.37351 * 23 16 15 41 41 H 1.09002 * 109.63165 * 188.93972 * 23 16 15 42 42 H 1.08996 * 109.48219 * 56.38088 * 24 12 11 43 43 H 1.09007 * 109.47727 * 296.34247 * 24 12 11 44 44 H 1.08000 * 119.95485 * 179.70860 * 25 10 9 45 45 H 1.08001 * 120.05535 * 180.27353 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0415 1.2024 0.0000 4 8 1.3789 2.2227 0.0005 5 6 3.4567 1.2766 -0.0005 6 6 4.0706 2.4727 -0.1396 7 6 3.2947 3.6546 -0.5373 8 6 2.3566 3.5629 -1.5732 9 6 1.6349 4.6687 -1.9415 10 6 1.8331 5.8817 -1.2870 11 7 1.0982 7.0010 -1.6636 12 6 1.3045 8.2781 -0.9760 13 1 1.5174 8.0924 0.0767 14 6 2.4902 9.0088 -1.6096 15 6 2.7615 10.3036 -0.8363 16 6 1.4840 11.1117 -0.7803 17 6 1.4695 12.4382 -1.1560 18 7 2.5860 13.0313 -1.5184 19 14 -0.1360 13.3932 -1.1502 20 1 -1.2125 12.5481 -0.5737 21 1 0.0216 14.6215 -0.3307 22 1 -0.4933 13.7689 -2.5417 23 6 0.2229 10.4274 -0.3013 24 6 0.0402 9.1304 -1.0965 25 6 2.7686 5.9787 -0.2601 26 6 3.4909 4.8767 0.1183 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 4.0446 0.3774 0.1102 31 1 5.1318 2.5593 0.0418 32 1 2.2021 2.6223 -2.0811 33 1 0.9111 4.5988 -2.7399 34 1 0.4492 6.9360 -2.3815 35 1 2.2548 9.2474 -2.6467 36 1 3.3743 8.3723 -1.5744 37 1 3.5361 10.8780 -1.3442 38 1 3.0878 10.0640 0.1758 39 1 2.5758 13.9646 -1.7824 40 1 0.3123 10.1964 0.7602 41 1 -0.6336 11.0813 -0.4655 42 1 -0.8105 8.5770 -0.6991 43 1 -0.1387 9.3690 -2.1450 44 1 2.9225 6.9225 0.2418 45 1 4.2131 4.9517 0.9177 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167845754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:39 Heat of formation + Delta-G solvation = -53.703559 kcal Electronic energy + Delta-G solvation = -25745.230660 eV Core-core repulsion = 22113.293658 eV Total energy + Delta-G solvation = -3631.937003 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.67320 -40.48837 -38.91330 -37.61287 -36.00785 -34.45949 -33.26522 -31.94962 -31.41272 -30.24504 -28.89677 -27.79459 -24.95364 -24.25420 -23.34093 -23.19933 -22.27000 -21.08232 -20.37567 -18.85529 -18.46523 -17.93773 -17.43185 -17.32638 -16.86825 -16.37977 -15.76655 -15.41279 -15.14424 -14.98436 -14.77898 -14.70253 -14.40555 -14.30110 -14.05885 -13.95058 -13.91437 -13.62011 -13.27281 -12.95031 -12.80093 -12.78654 -12.58296 -12.37160 -12.04366 -11.85896 -11.82227 -11.60272 -11.46592 -11.19918 -11.02207 -10.80841 -10.57421 -10.51817 -10.08846 -9.64429 -8.17168 -8.02696 -6.11890 -0.27073 0.70378 1.02606 1.38459 1.42156 1.50420 2.11125 2.18273 2.41008 2.55821 3.08818 3.12495 3.92783 3.93484 4.05330 4.11874 4.20060 4.24052 4.35794 4.36179 4.46025 4.53296 4.55888 4.70368 4.72667 4.74608 4.81014 4.95515 5.00201 5.02546 5.09775 5.15658 5.21212 5.26587 5.27796 5.29516 5.52035 5.54176 5.56392 5.63139 5.66673 5.75909 5.80180 5.82909 6.03567 6.34405 6.49689 6.92641 6.93835 6.95338 7.46338 8.94200 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.030107 B = 0.002597 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.789661 B =10778.491823 C =11339.266440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.482 3.518 4 O -0.525 6.525 5 C -0.238 4.238 6 C 0.042 3.958 7 C -0.173 4.173 8 C 0.002 3.998 9 C -0.223 4.223 10 C 0.233 3.767 11 N -0.732 5.732 12 C 0.172 3.828 13 H 0.063 0.937 14 C -0.104 4.104 15 C 0.009 3.991 16 C -0.497 4.497 17 C 0.018 3.982 18 N -0.934 5.934 19 Si 0.936 3.064 20 H -0.231 1.231 21 H -0.289 1.289 22 H -0.285 1.285 23 C -0.026 4.026 24 C -0.106 4.106 25 C -0.233 4.233 26 C -0.043 4.043 27 H 0.128 0.872 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.171 0.829 31 H 0.177 0.823 32 H 0.113 0.887 33 H 0.125 0.875 34 H 0.401 0.599 35 H 0.037 0.963 36 H 0.040 0.960 37 H 0.022 0.978 38 H -0.001 1.001 39 H 0.262 0.738 40 H 0.021 0.979 41 H 0.049 0.951 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.112 0.888 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.963 -25.636 1.551 25.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.281 6.281 3 C 0.332 3.668 4 O -0.417 6.417 5 C -0.256 4.256 6 C 0.024 3.976 7 C -0.175 4.175 8 C -0.017 4.017 9 C -0.246 4.246 10 C 0.126 3.874 11 N -0.358 5.358 12 C 0.068 3.932 13 H 0.081 0.919 14 C -0.143 4.143 15 C -0.029 4.029 16 C -0.517 4.517 17 C -0.180 4.180 18 N -0.574 5.574 19 Si 0.762 3.238 20 H -0.155 1.155 21 H -0.216 1.216 22 H -0.211 1.211 23 C -0.064 4.064 24 C -0.145 4.145 25 C -0.256 4.256 26 C -0.062 4.062 27 H 0.146 0.854 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.188 0.812 31 H 0.194 0.806 32 H 0.131 0.869 33 H 0.143 0.857 34 H 0.237 0.763 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.041 0.959 38 H 0.017 0.983 39 H 0.071 0.929 40 H 0.039 0.961 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.130 0.870 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.115 -25.008 1.594 25.083 hybrid contribution -0.979 1.221 -0.448 1.628 sum -2.093 -23.787 1.146 23.906 Atomic orbital electron populations 1.23013 0.76411 1.05089 1.01770 1.86215 1.24050 1.33353 1.84434 1.20784 0.91522 0.81133 0.73407 1.91027 1.68300 1.35721 1.46678 1.21499 0.90144 1.00792 1.13210 1.22871 1.00619 0.89357 0.84753 1.18877 1.02809 0.94330 1.01528 1.20676 0.90939 0.96086 0.93959 1.20403 1.06545 0.92222 1.05393 1.18185 0.89974 0.87088 0.92133 1.44936 1.43399 1.07292 1.40136 1.20664 0.95499 0.81762 0.95320 0.91885 1.21852 0.96760 0.96704 0.99001 1.19300 0.96529 0.92774 0.94304 1.20643 0.94569 0.94952 1.41486 1.25692 0.99167 0.98226 0.94944 1.70007 1.28420 1.12102 1.46854 0.85859 0.81855 0.78277 0.77789 1.15462 1.21563 1.21105 1.19971 0.96172 0.94394 0.95869 1.21713 0.95442 0.96529 1.00792 1.20567 1.02619 1.00157 1.02286 1.21023 0.96990 0.90660 0.97520 0.85371 0.93048 0.92823 0.81184 0.80597 0.86926 0.85743 0.76339 0.94462 0.94114 0.95927 0.98308 0.92915 0.96102 0.93254 0.91942 0.92712 0.86990 0.84148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.45 113.37 1.18 1.66 16 2 O -0.36 -7.09 10.46 -58.61 -0.61 -7.70 16 3 C 0.48 10.69 6.77 68.68 0.47 11.15 16 4 O -0.53 -15.10 11.84 19.32 0.23 -14.87 16 5 C -0.24 -3.79 9.85 22.42 0.22 -3.57 16 6 C 0.04 0.68 9.79 23.82 0.23 0.92 16 7 C -0.17 -4.23 4.47 -20.14 -0.09 -4.32 16 8 C 0.00 0.06 6.62 22.44 0.15 0.21 16 9 C -0.22 -6.42 9.85 22.24 0.22 -6.20 16 10 C 0.23 7.41 6.63 38.48 0.26 7.66 16 11 N -0.73 -23.44 5.22 -318.93 -1.66 -25.10 16 12 C 0.17 6.40 2.04 44.98 0.09 6.49 16 13 H 0.06 2.45 6.48 -2.39 -0.02 2.43 16 14 C -0.10 -4.44 5.40 30.67 0.17 -4.27 16 15 C 0.01 0.46 5.95 30.10 0.18 0.64 16 16 C -0.50 -25.89 5.52 -16.18 -0.09 -25.97 16 17 C 0.02 0.96 5.46 84.65 0.46 1.42 16 18 N -0.93 -55.19 12.74 21.45 0.27 -54.92 16 19 Si 0.94 42.06 28.00 68.60 1.92 43.98 16 20 H -0.23 -9.38 5.46 99.48 0.54 -8.83 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 C -0.03 -1.15 5.61 30.10 0.17 -0.98 16 24 C -0.11 -3.99 5.41 30.66 0.17 -3.82 16 25 C -0.23 -7.42 8.71 22.24 0.19 -7.23 16 26 C -0.04 -1.15 9.76 22.44 0.22 -0.93 16 27 H 0.13 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.05 0.86 8.13 -2.39 -0.02 0.84 16 29 H 0.05 0.87 8.13 -2.39 -0.02 0.85 16 30 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 31 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 32 H 0.11 2.73 7.08 -2.91 -0.02 2.71 16 33 H 0.12 3.17 8.06 -2.91 -0.02 3.15 16 34 H 0.40 11.37 8.60 -92.71 -0.80 10.58 16 35 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.04 1.66 7.62 -2.39 -0.02 1.64 16 37 H 0.02 1.27 7.09 -2.39 -0.02 1.25 16 38 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 40 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.05 2.11 4.29 -2.39 -0.01 2.10 16 42 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 44 H 0.11 3.80 6.05 -2.91 -0.02 3.79 16 45 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -66.67 359.07 4.38 -62.29 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.04 Total: 23.48 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: 4.19 Total: -27.16 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -1.39 Total: -80.02 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.38 Total: -22.57 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.92 Total: 43.98 kcal Total: -66.67 4.38 -62.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.589 kcal (2) G-P(sol) polarization free energy of solvation -66.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds