Wall clock time and date at job start Tue Mar 31 2020 11:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.34936 * 117.00236 * 2 1 4 4 O 1.21655 * 120.00406 * 359.97438 * 3 2 1 5 5 C 1.41717 * 120.00027 * 179.97438 * 3 2 1 6 6 C 1.35166 * 119.99783 * 179.97438 * 5 3 2 7 7 C 1.46873 * 119.99437 * 180.02562 * 6 5 3 8 8 C 1.40055 * 120.09167 * 180.02562 * 7 6 5 9 9 C 1.37087 * 119.90423 * 179.97438 * 8 7 6 10 10 C 1.39252 * 120.09255 * 359.97438 * 9 8 7 11 11 N 1.39095 * 119.90343 * 179.97438 * 10 9 8 12 12 C 1.46497 * 120.00111 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.41205 * 35.14527 * 12 11 10 14 14 C 1.52964 * 109.41203 * 154.99958 * 12 11 10 15 15 C 1.53226 * 109.40408 * 183.63649 * 14 12 11 16 16 C 1.51273 * 108.53594 * 305.37309 * 15 14 12 17 17 C 1.37874 * 120.84758 * 231.32373 * 16 15 14 18 18 N 1.31523 * 119.99933 * 190.01281 * 17 16 15 19 19 Si 1.86797 * 120.00461 * 10.01439 * 17 16 15 20 20 H 1.48496 * 109.47514 * 179.97438 * 19 17 16 21 21 H 1.48501 * 109.47041 * 300.00025 * 19 17 16 22 22 H 1.48507 * 109.47161 * 59.99620 * 19 17 16 23 23 C 1.51270 * 118.29930 * 51.60374 * 16 15 14 24 24 C 1.52952 * 109.35806 * 275.32086 * 12 11 10 25 25 C 1.39258 * 120.19544 * 0.27292 * 10 9 8 26 26 C 1.37088 * 120.09302 * 359.48925 * 25 10 9 27 27 H 1.09003 * 109.46980 * 300.01023 * 1 2 3 28 28 H 1.09000 * 109.46963 * 60.00316 * 1 2 3 29 29 H 1.09001 * 109.47326 * 180.02562 * 1 2 3 30 30 H 1.07994 * 119.99669 * 0.02562 * 5 3 2 31 31 H 1.07994 * 119.99829 * 0.02562 * 6 5 3 32 32 H 1.08003 * 120.04932 * 359.95570 * 8 7 6 33 33 H 1.07992 * 119.95074 * 179.97438 * 9 8 7 34 34 H 0.96997 * 119.99648 * 0.02562 * 11 10 9 35 35 H 1.09002 * 109.47829 * 63.65630 * 14 12 11 36 36 H 1.09001 * 109.49395 * 303.62312 * 14 12 11 37 37 H 1.09003 * 109.62397 * 185.65978 * 15 14 12 38 38 H 1.08997 * 109.62525 * 65.08769 * 15 14 12 39 39 H 0.97005 * 119.99649 * 5.66566 * 18 17 16 40 40 H 1.08993 * 109.62821 * 68.11204 * 23 16 15 41 41 H 1.09005 * 109.62381 * 188.68818 * 23 16 15 42 42 H 1.09003 * 109.48184 * 296.30558 * 24 12 11 43 43 H 1.08998 * 109.48506 * 56.33851 * 24 12 11 44 44 H 1.08001 * 119.95139 * 179.75230 * 25 10 9 45 45 H 1.08000 * 120.04620 * 180.23678 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0416 1.2023 0.0000 4 8 1.3792 2.2226 -0.0005 5 6 3.4569 1.2764 0.0005 6 6 4.0705 2.4807 0.0000 7 6 5.5372 2.5574 0.0000 8 6 6.1752 3.8043 0.0000 9 6 7.5444 3.8714 0.0006 10 6 8.3008 2.7022 0.0016 11 7 9.6898 2.7749 0.0016 12 6 10.4876 1.5462 0.0033 13 1 9.9799 0.7838 -0.5875 14 6 11.8612 1.8311 -0.6067 15 6 12.6622 0.5275 -0.6883 16 6 12.7091 -0.0952 0.6896 17 6 13.9078 -0.4822 1.2501 18 7 13.9172 -1.1963 2.3545 19 14 15.5186 0.0077 0.4411 20 1 16.6540 -0.5277 1.2344 21 1 15.5703 -0.5477 -0.9352 22 1 15.6121 1.4886 0.3810 23 6 11.4064 -0.2883 1.4339 24 6 10.6514 1.0501 1.4408 25 6 7.6706 1.4604 -0.0036 26 6 6.3019 1.3841 0.0008 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 4.0450 0.3706 0.0005 31 1 3.4823 3.3864 -0.0004 32 1 5.5893 4.7115 -0.0007 33 1 8.0371 4.8324 0.0001 34 1 10.1302 3.6391 0.0013 35 1 12.3949 2.5473 0.0181 36 1 11.7361 2.2442 -1.6076 37 1 13.6756 0.7412 -1.0281 38 1 12.1768 -0.1576 -1.3833 39 1 13.0834 -1.5204 2.7296 40 1 10.8069 -1.0475 0.9318 41 1 11.6127 -0.5990 2.4582 42 1 11.2139 1.7847 2.0171 43 1 9.6688 0.9097 1.8912 44 1 8.2611 0.5561 -0.0067 45 1 5.8140 0.4206 0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167845756.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:43 Heat of formation + Delta-G solvation = -75.995061 kcal Electronic energy + Delta-G solvation = -24932.637650 eV Core-core repulsion = 21299.734015 eV Total energy + Delta-G solvation = -3632.903635 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.55545 -40.73001 -39.00936 -37.74445 -36.42260 -34.66600 -33.23797 -32.04766 -31.48418 -30.32954 -28.82830 -27.69598 -24.98922 -24.52215 -23.48962 -23.09944 -22.09781 -21.12902 -20.44339 -19.13129 -18.62477 -18.03216 -17.68012 -17.40835 -17.03738 -16.43734 -15.80189 -15.71413 -15.29800 -15.08103 -14.87936 -14.48161 -14.44777 -14.31970 -14.28482 -14.09105 -13.56849 -13.45807 -13.26824 -12.93008 -12.85087 -12.67861 -12.50247 -12.27842 -11.99817 -11.93228 -11.89604 -11.73459 -11.66627 -11.55916 -11.36089 -11.16746 -10.56128 -10.37821 -10.14446 -9.94913 -8.59341 -8.16861 -6.16641 -0.51633 0.57815 0.96453 1.52279 1.57420 1.76680 1.99693 2.08605 2.45120 2.56493 3.02638 3.14656 3.78224 3.83763 3.93357 4.04607 4.13978 4.18984 4.29708 4.33511 4.33758 4.40191 4.45807 4.50461 4.62059 4.70860 4.72393 4.86414 4.90093 4.95587 5.03799 5.05716 5.12157 5.17638 5.18726 5.25938 5.27018 5.38113 5.43203 5.48504 5.54134 5.69987 5.74508 5.89047 6.03007 6.25185 6.35738 6.73124 6.77675 6.84858 7.52976 8.77651 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.024990 B = 0.002252 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.175993 B =12428.231449 C =13189.197279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.503 3.497 4 O -0.555 6.555 5 C -0.260 4.260 6 C 0.056 3.944 7 C -0.179 4.179 8 C -0.028 4.028 9 C -0.213 4.213 10 C 0.240 3.760 11 N -0.725 5.725 12 C 0.171 3.829 13 H 0.067 0.933 14 C -0.109 4.109 15 C -0.008 4.008 16 C -0.575 4.575 17 C -0.019 4.019 18 N -0.943 5.943 19 Si 1.094 2.906 20 H -0.299 1.299 21 H -0.266 1.266 22 H -0.264 1.264 23 C -0.001 4.001 24 C -0.104 4.104 25 C -0.227 4.227 26 C -0.037 4.037 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.130 0.870 30 H 0.148 0.852 31 H 0.140 0.860 32 H 0.153 0.847 33 H 0.144 0.856 34 H 0.407 0.593 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.036 0.964 38 H 0.017 0.983 39 H 0.258 0.742 40 H 0.001 0.999 41 H 0.008 0.992 42 H 0.039 0.961 43 H 0.041 0.959 44 H 0.115 0.885 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.993 8.969 -7.134 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.355 3.645 4 O -0.450 6.450 5 C -0.279 4.279 6 C 0.038 3.962 7 C -0.181 4.181 8 C -0.047 4.047 9 C -0.235 4.235 10 C 0.132 3.868 11 N -0.349 5.349 12 C 0.066 3.934 13 H 0.085 0.915 14 C -0.147 4.147 15 C -0.047 4.047 16 C -0.594 4.594 17 C -0.218 4.218 18 N -0.581 5.581 19 Si 0.917 3.083 20 H -0.226 1.226 21 H -0.191 1.191 22 H -0.189 1.189 23 C -0.039 4.039 24 C -0.143 4.143 25 C -0.250 4.250 26 C -0.056 4.056 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.148 0.852 30 H 0.166 0.834 31 H 0.158 0.842 32 H 0.171 0.829 33 H 0.162 0.838 34 H 0.243 0.757 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.036 0.964 39 H 0.069 0.931 40 H 0.019 0.981 41 H 0.027 0.973 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.133 0.867 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.446 8.991 -6.958 20.824 hybrid contribution -1.517 -0.231 0.405 1.587 sum -18.963 8.760 -6.553 21.892 Atomic orbital electron populations 1.23134 0.75762 1.05493 1.02243 1.86219 1.24673 1.32720 1.84239 1.20260 0.90588 0.81168 0.72525 1.90842 1.68400 1.36579 1.49192 1.21163 0.90383 1.00834 1.15558 1.22515 0.92717 0.97642 0.83373 1.18723 0.91781 0.93921 1.13682 1.21259 0.93844 0.97236 0.92325 1.20650 0.94162 0.96923 1.11796 1.18382 0.84016 0.94494 0.89872 1.45008 1.02443 1.08875 1.78569 1.20651 0.91442 0.85878 0.95393 0.91465 1.21746 0.94398 0.99072 0.99490 1.19564 0.96169 0.93576 0.95345 1.21579 0.93300 1.41523 1.02995 1.27002 1.05304 0.93846 0.95606 1.70916 1.30389 1.34603 1.22155 0.83222 0.72251 0.77460 0.75324 1.22606 1.19147 1.18870 1.19482 0.95152 0.93362 0.95883 1.21890 0.97720 0.97986 0.96709 1.20658 0.95397 0.96472 1.12446 1.21237 0.92710 0.98656 0.92959 0.92377 0.92284 0.85239 0.83408 0.84249 0.82904 0.83830 0.75708 0.92619 0.91409 0.94597 0.96418 0.93096 0.98078 0.97308 0.94199 0.94010 0.86708 0.84372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.45 113.37 1.18 1.58 16 2 O -0.36 -7.62 10.46 -58.52 -0.61 -8.23 16 3 C 0.50 11.87 7.69 68.68 0.53 12.39 16 4 O -0.56 -15.54 15.88 19.33 0.31 -15.24 16 5 C -0.26 -5.32 9.33 22.42 0.21 -5.11 16 6 C 0.06 1.09 9.41 23.82 0.22 1.31 16 7 C -0.18 -3.66 5.87 -20.14 -0.12 -3.78 16 8 C -0.03 -0.51 9.76 22.44 0.22 -0.29 16 9 C -0.21 -4.28 9.85 22.24 0.22 -4.06 16 10 C 0.24 6.04 6.63 38.48 0.26 6.29 16 11 N -0.72 -18.96 5.22 -319.01 -1.66 -20.63 16 12 C 0.17 5.63 2.04 44.96 0.09 5.72 16 13 H 0.07 2.31 6.45 -2.39 -0.02 2.29 16 14 C -0.11 -3.69 5.40 30.66 0.17 -3.53 16 15 C -0.01 -0.35 5.65 30.11 0.17 -0.18 16 16 C -0.57 -28.78 5.48 -16.17 -0.09 -28.87 16 17 C -0.02 -1.04 5.45 84.65 0.46 -0.58 16 18 N -0.94 -56.03 13.57 21.45 0.29 -55.74 16 19 Si 1.09 47.71 27.20 68.60 1.87 49.58 16 20 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 21 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 23 C 0.00 -0.03 5.81 30.25 0.18 0.15 16 24 C -0.10 -4.07 5.43 30.80 0.17 -3.90 16 25 C -0.23 -6.00 8.75 22.24 0.19 -5.81 16 26 C -0.04 -0.84 9.38 22.44 0.21 -0.63 16 27 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 28 H 0.06 0.85 8.13 -2.39 -0.02 0.84 16 29 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.15 2.64 6.07 -2.91 -0.02 2.62 16 31 H 0.14 2.49 7.45 -2.91 -0.02 2.47 16 32 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.41 8.99 8.60 -92.71 -0.80 8.19 16 35 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.04 1.44 5.16 -2.39 -0.01 1.42 16 38 H 0.02 0.72 8.14 -2.39 -0.02 0.71 16 39 H 0.26 15.52 6.65 -92.70 -0.62 14.91 16 40 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.01 0.44 6.18 -2.38 -0.01 0.43 16 42 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.04 1.55 7.71 -2.39 -0.02 1.54 16 44 H 0.11 3.34 6.12 -2.91 -0.02 3.33 16 45 H 0.14 2.66 6.16 -2.91 -0.02 2.64 16 Total: -1.00 -64.22 363.81 4.83 -59.40 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.37 Total: 20.15 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 4.27 Total: -29.29 kcal Atomic # 7 Polarization: -75.00 SS G_CDS: -1.37 Total: -76.37 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.31 Total: -23.47 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 1.87 Total: 49.58 kcal Total: -64.22 4.83 -59.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845756.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.599 kcal (2) G-P(sol) polarization free energy of solvation -64.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds