Wall clock time and date at job start Tue Mar 31 2020 10:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 120.00301 * 2 1 4 4 H 1.09000 * 115.55561 * 334.30574 * 3 2 1 5 5 C 1.53001 * 117.49859 * 188.62037 * 3 2 1 6 6 C 1.52996 * 117.50058 * 119.99681 * 3 2 1 7 7 N 1.46499 * 117.49680 * 214.97898 * 6 3 2 8 8 C 1.39677 * 119.99801 * 236.39869 * 7 6 3 9 9 C 1.38912 * 120.07747 * 352.94097 * 8 7 6 10 10 C 1.38098 * 119.92728 * 179.97438 * 9 8 7 11 11 C 1.38285 * 120.07336 * 359.97438 * 10 9 8 12 12 C 1.50701 * 119.92261 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47351 * 90.00147 * 12 11 10 14 14 H 1.07993 * 119.99684 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99591 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00404 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99550 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47522 * 89.99977 * 17 15 13 19 19 H 1.48509 * 109.47018 * 209.99975 * 17 15 13 20 20 H 1.48499 * 109.47157 * 329.99823 * 17 15 13 21 21 C 1.38278 * 120.15175 * 0.27210 * 11 10 9 22 22 C 1.38112 * 120.07337 * 359.45605 * 21 11 10 23 23 C 1.50703 * 117.51704 * 0.02562 * 6 3 2 24 24 O 1.20823 * 120.00085 * 69.79831 * 23 6 3 25 25 O 1.34225 * 119.99587 * 249.79453 * 23 6 3 26 26 C 1.45202 * 116.99735 * 180.02562 * 25 23 6 27 27 C 1.53000 * 109.46900 * 180.02562 * 26 25 23 28 28 H 1.08005 * 119.99775 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.00210 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99913 * 179.97438 * 2 1 3 31 31 H 1.08995 * 117.49571 * 145.01455 * 5 3 2 32 32 H 1.09006 * 117.49633 * 0.02562 * 5 3 2 33 33 H 0.96995 * 120.00077 * 56.40193 * 7 6 3 34 34 H 1.08002 * 120.03600 * 359.97438 * 9 8 7 35 35 H 1.08006 * 119.96472 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.46766 * 210.00050 * 12 11 10 37 37 H 1.08999 * 109.47343 * 329.99740 * 12 11 10 38 38 H 0.96999 * 120.00028 * 180.02562 * 16 15 13 39 39 H 1.08002 * 119.96872 * 179.69870 * 21 11 10 40 40 H 1.08003 * 120.03693 * 180.27352 * 22 21 11 41 41 H 1.08997 * 109.46916 * 299.99678 * 26 25 23 42 42 H 1.08995 * 109.47582 * 60.00311 * 26 25 23 43 43 H 1.09000 * 109.47535 * 60.00018 * 27 26 25 44 44 H 1.09008 * 109.47144 * 179.97438 * 27 26 25 45 45 H 1.09006 * 109.47369 * 299.99842 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.5313 2.1554 -0.4264 5 6 3.5789 1.2459 -0.2034 6 6 3.0044 1.5776 1.1753 7 7 3.1210 2.9616 1.6415 8 6 4.3728 3.5794 1.6889 9 6 5.5229 2.8425 1.4359 10 6 6.7589 3.4566 1.4831 11 6 6.8525 4.8037 1.7813 12 6 8.2030 5.4705 1.8313 13 6 8.5498 6.0059 0.4659 14 1 7.8613 5.8759 -0.3559 15 6 9.7461 6.6617 0.2661 16 7 10.5842 6.8204 1.2670 17 14 10.1762 7.3247 -1.4265 18 1 9.6768 8.7173 -1.5543 19 1 11.6506 7.3094 -1.6041 20 1 9.5435 6.4745 -2.4667 21 6 5.7101 5.5391 2.0386 22 6 4.4704 4.9324 1.9876 23 6 3.1074 0.5205 2.2444 24 8 3.6476 -0.5328 2.0024 25 8 2.5990 0.7491 3.4654 26 6 2.7349 -0.3136 4.4455 27 6 2.1001 0.1266 5.7662 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 4.0435 2.0573 -0.7636 32 1 4.0306 0.2630 -0.3377 33 1 2.3290 3.4488 1.9174 34 1 5.4505 1.7905 1.2026 35 1 7.6535 2.8841 1.2869 36 1 8.1764 6.2917 2.5476 37 1 8.9556 4.7444 2.1388 38 1 11.4256 7.2821 1.1265 39 1 5.7870 6.5899 2.2760 40 1 3.5782 5.5084 2.1844 41 1 2.2319 -1.2096 4.0820 42 1 3.7915 -0.5290 4.6039 43 1 1.0434 0.3417 5.6076 44 1 2.2016 -0.6713 6.5019 45 1 2.6027 1.0229 6.1301 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170917611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:49 Heat of formation + Delta-G solvation = -18.245366 kcal Electronic energy + Delta-G solvation = -25683.775710 eV Core-core repulsion = 22053.376290 eV Total energy + Delta-G solvation = -3630.399420 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.02166 -39.13945 -37.99621 -36.50642 -34.64960 -33.04584 -32.05902 -31.91421 -30.20433 -29.79977 -26.46697 -25.29354 -23.50681 -23.11941 -22.62325 -21.92735 -20.77575 -20.03216 -19.87310 -17.81622 -17.06973 -16.76930 -16.61151 -16.23133 -15.95326 -14.91870 -14.68333 -14.36742 -14.21935 -14.08974 -13.82389 -13.44824 -13.06783 -12.97315 -12.78441 -12.71259 -12.37382 -12.19690 -12.15188 -11.86652 -11.72939 -11.50243 -11.22586 -11.18594 -10.94912 -10.76209 -10.72040 -10.62623 -10.50949 -10.08635 -9.91871 -9.52355 -9.38535 -9.05526 -8.37137 -8.24926 -6.88907 -5.97481 -4.01756 1.66151 1.97343 2.10880 2.25006 2.47018 3.24542 3.33335 3.39503 3.43821 3.57368 4.30962 4.36378 4.40858 4.48254 4.66797 4.68019 4.72530 4.77396 4.85019 5.00984 5.21371 5.35563 5.40948 5.45527 5.51775 5.53495 5.55494 5.61746 5.72067 5.83282 6.02233 6.11260 6.22620 6.27585 6.30180 6.34458 6.37296 6.70059 6.81589 7.27198 7.29069 7.31952 7.58019 7.64604 7.76857 7.96998 7.97213 7.98166 8.40859 9.04039 9.61734 11.11301 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.017454 B = 0.002960 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.813623 B = 9457.202881 C =10270.122927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.137 4.137 3 C -0.095 4.095 4 H 0.128 0.872 5 C -0.126 4.126 6 C 0.110 3.890 7 N -0.712 5.712 8 C 0.174 3.826 9 C -0.187 4.187 10 C -0.083 4.083 11 C -0.076 4.076 12 C 0.052 3.948 13 C -0.508 4.508 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.083 4.083 22 C -0.182 4.182 23 C 0.497 3.503 24 O -0.506 6.506 25 O -0.345 6.345 26 C 0.060 3.940 27 C -0.152 4.152 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.403 0.597 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.261 0.739 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.591 -13.697 2.945 25.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.114 4.114 4 H 0.145 0.855 5 C -0.164 4.164 6 C 0.018 3.982 7 N -0.346 5.346 8 C 0.077 3.923 9 C -0.209 4.209 10 C -0.101 4.101 11 C -0.078 4.078 12 C 0.015 3.985 13 C -0.547 4.547 14 H 0.075 0.925 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.102 4.102 22 C -0.204 4.204 23 C 0.338 3.662 24 O -0.393 6.393 25 O -0.261 6.261 26 C -0.014 4.014 27 C -0.209 4.209 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.239 0.761 34 H 0.128 0.872 35 H 0.135 0.865 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.136 0.864 40 H 0.128 0.872 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.195 -14.105 2.916 25.626 hybrid contribution 0.088 0.437 -0.661 0.798 sum -21.107 -13.667 2.255 25.247 Atomic orbital electron populations 1.23850 0.95636 1.02219 0.99468 1.22438 0.95779 0.96418 1.00912 1.21897 0.93268 0.98398 0.97878 0.85467 1.23597 0.94537 1.05199 0.93065 1.19717 1.09364 0.82981 0.86153 1.43449 1.06901 1.09289 1.74931 1.17556 0.84429 0.91618 0.98717 1.20642 0.91775 0.99079 1.09388 1.20869 0.96184 0.94891 0.98186 1.20504 0.97611 0.93175 0.96466 1.18267 0.87446 0.95315 0.97457 1.21117 1.02879 1.35711 0.94958 0.92527 1.25018 0.96361 0.96211 0.96850 1.69959 1.09972 1.42724 1.30862 0.86569 0.77441 0.79334 0.84547 1.20667 1.21238 1.19832 1.20839 0.91239 0.99412 0.98671 1.20450 0.97920 0.92489 1.09574 1.23025 0.74180 0.86800 0.82241 1.90650 1.40705 1.26830 1.81121 1.86526 1.72634 1.45517 1.21454 1.23047 1.01867 0.88878 0.87583 1.21797 1.01699 1.02910 0.94465 0.88220 0.87957 0.86467 0.86017 0.86361 0.76117 0.87233 0.86536 0.95624 0.95641 0.92944 0.86397 0.87153 0.91415 0.91148 0.91578 0.90256 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 14.35 29.01 0.42 -0.88 16 2 C -0.14 -1.24 8.60 -36.02 -0.31 -1.55 16 3 C -0.10 -0.92 5.91 -91.77 -0.54 -1.46 16 4 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 5 C -0.13 -1.42 7.62 -26.73 -0.20 -1.62 16 6 C 0.11 1.32 1.89 -132.97 -0.25 1.07 16 7 N -0.71 -9.00 5.56 -47.06 -0.26 -9.26 16 8 C 0.17 2.78 6.53 -83.79 -0.55 2.23 16 9 C -0.19 -3.28 8.65 -39.38 -0.34 -3.62 16 10 C -0.08 -1.67 9.69 -39.62 -0.38 -2.05 16 11 C -0.08 -1.68 5.07 -104.59 -0.53 -2.21 16 12 C 0.05 1.36 5.10 -29.03 -0.15 1.21 16 13 C -0.51 -14.39 9.09 -34.44 -0.31 -14.70 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 17 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 21 C -0.08 -1.62 9.69 -39.61 -0.38 -2.01 16 22 C -0.18 -3.01 9.90 -39.38 -0.39 -3.40 16 23 C 0.50 6.72 6.64 36.01 0.24 6.96 16 24 O -0.51 -7.63 15.90 -18.75 -0.30 -7.93 16 25 O -0.35 -4.38 10.16 -39.25 -0.40 -4.78 16 26 C 0.06 0.61 6.19 37.16 0.23 0.84 16 27 C -0.15 -1.13 10.29 37.16 0.38 -0.75 16 28 H 0.10 0.64 8.05 -52.48 -0.42 0.22 16 29 H 0.10 0.63 8.06 -52.49 -0.42 0.21 16 30 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.12 1.41 7.91 -51.93 -0.41 1.00 16 32 H 0.12 1.31 7.67 -51.93 -0.40 0.92 16 33 H 0.40 4.30 8.85 -40.82 -0.36 3.94 16 34 H 0.11 1.81 5.97 -52.49 -0.31 1.50 16 35 H 0.12 2.32 8.06 -52.48 -0.42 1.89 16 36 H 0.03 0.70 8.08 -51.93 -0.42 0.28 16 37 H 0.03 0.70 8.08 -51.93 -0.42 0.28 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.11 1.52 8.06 -52.48 -0.42 1.09 16 41 H 0.07 0.63 8.13 -51.93 -0.42 0.20 16 42 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 386.22 15.07 5.82 5.82 Total: -1.00 -31.92 386.22 -9.53 -41.45 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.94 Total: 4.44 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -3.17 Total: -20.42 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.47 Total: -35.30 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.70 Total: -12.71 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.92 -9.53 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170917611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.208 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds