Wall clock time and date at job start Tue Mar 31 2020 10:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 120.00301 * 2 1 4 4 H 1.09000 * 115.55561 * 334.30574 * 3 2 1 5 5 C 1.53001 * 117.49859 * 188.62037 * 3 2 1 6 6 C 1.52996 * 117.50058 * 119.99681 * 3 2 1 7 7 N 1.46499 * 117.49680 * 214.97898 * 6 3 2 8 8 C 1.39677 * 119.99801 * 236.39869 * 7 6 3 9 9 C 1.38912 * 120.07747 * 352.94097 * 8 7 6 10 10 C 1.38098 * 119.92728 * 179.97438 * 9 8 7 11 11 C 1.38285 * 120.07336 * 359.97438 * 10 9 8 12 12 C 1.50701 * 119.92261 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47351 * 90.00147 * 12 11 10 14 14 H 1.07993 * 119.99684 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99591 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00404 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99550 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47522 * 89.99977 * 17 15 13 19 19 H 1.48509 * 109.47018 * 209.99975 * 17 15 13 20 20 H 1.48499 * 109.47157 * 329.99823 * 17 15 13 21 21 C 1.38278 * 120.15175 * 0.27210 * 11 10 9 22 22 C 1.38112 * 120.07337 * 359.45605 * 21 11 10 23 23 C 1.50703 * 117.51704 * 0.02562 * 6 3 2 24 24 O 1.20823 * 120.00085 * 69.79831 * 23 6 3 25 25 O 1.34225 * 119.99587 * 249.79453 * 23 6 3 26 26 C 1.45202 * 116.99735 * 180.02562 * 25 23 6 27 27 C 1.53000 * 109.46900 * 180.02562 * 26 25 23 28 28 H 1.08005 * 119.99775 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.00210 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99913 * 179.97438 * 2 1 3 31 31 H 1.08995 * 117.49571 * 145.01455 * 5 3 2 32 32 H 1.09006 * 117.49633 * 0.02562 * 5 3 2 33 33 H 0.96995 * 120.00077 * 56.40193 * 7 6 3 34 34 H 1.08002 * 120.03600 * 359.97438 * 9 8 7 35 35 H 1.08006 * 119.96472 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.46766 * 210.00050 * 12 11 10 37 37 H 1.08999 * 109.47343 * 329.99740 * 12 11 10 38 38 H 0.96999 * 120.00028 * 180.02562 * 16 15 13 39 39 H 1.08002 * 119.96872 * 179.69870 * 21 11 10 40 40 H 1.08003 * 120.03693 * 180.27352 * 22 21 11 41 41 H 1.08997 * 109.46916 * 299.99678 * 26 25 23 42 42 H 1.08995 * 109.47582 * 60.00311 * 26 25 23 43 43 H 1.09000 * 109.47535 * 60.00018 * 27 26 25 44 44 H 1.09008 * 109.47144 * 179.97438 * 27 26 25 45 45 H 1.09006 * 109.47369 * 299.99842 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.5313 2.1554 -0.4264 5 6 3.5789 1.2459 -0.2034 6 6 3.0044 1.5776 1.1753 7 7 3.1210 2.9616 1.6415 8 6 4.3728 3.5794 1.6889 9 6 5.5229 2.8425 1.4359 10 6 6.7589 3.4566 1.4831 11 6 6.8525 4.8037 1.7813 12 6 8.2030 5.4705 1.8313 13 6 8.5498 6.0059 0.4659 14 1 7.8613 5.8759 -0.3559 15 6 9.7461 6.6617 0.2661 16 7 10.5842 6.8204 1.2670 17 14 10.1762 7.3247 -1.4265 18 1 9.6768 8.7173 -1.5543 19 1 11.6506 7.3094 -1.6041 20 1 9.5435 6.4745 -2.4667 21 6 5.7101 5.5391 2.0386 22 6 4.4704 4.9324 1.9876 23 6 3.1074 0.5205 2.2444 24 8 3.6476 -0.5328 2.0024 25 8 2.5990 0.7491 3.4654 26 6 2.7349 -0.3136 4.4455 27 6 2.1001 0.1266 5.7662 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 4.0435 2.0573 -0.7636 32 1 4.0306 0.2630 -0.3377 33 1 2.3290 3.4488 1.9174 34 1 5.4505 1.7905 1.2026 35 1 7.6535 2.8841 1.2869 36 1 8.1764 6.2917 2.5476 37 1 8.9556 4.7444 2.1388 38 1 11.4256 7.2821 1.1265 39 1 5.7870 6.5899 2.2760 40 1 3.5782 5.5084 2.1844 41 1 2.2319 -1.2096 4.0820 42 1 3.7915 -0.5290 4.6039 43 1 1.0434 0.3417 5.6076 44 1 2.2016 -0.6713 6.5019 45 1 2.6027 1.0229 6.1301 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170917611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:48 Heat of formation + Delta-G solvation = -34.660662 kcal Electronic energy + Delta-G solvation = -25684.487531 eV Core-core repulsion = 22053.376290 eV Total energy + Delta-G solvation = -3631.111241 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.01550 -40.38934 -39.10094 -37.54405 -35.98726 -34.78461 -33.16810 -32.63538 -31.69970 -31.38035 -28.14817 -26.38676 -24.86348 -24.36947 -23.56146 -23.21729 -22.02428 -21.21109 -20.76724 -18.82186 -18.47751 -18.20017 -17.75188 -17.64188 -16.86476 -16.74377 -15.87109 -15.51525 -15.42067 -15.06759 -14.79057 -14.65852 -14.48146 -14.30214 -14.16390 -13.79133 -13.68888 -13.31053 -13.20058 -13.12731 -12.98588 -12.63369 -12.55248 -12.49482 -12.37982 -12.19574 -11.98694 -11.81330 -11.58897 -11.57485 -11.43371 -11.36546 -10.79598 -10.57664 -10.14463 -9.71747 -8.37887 -8.05361 -6.29710 0.62869 0.76890 0.88268 1.11946 1.40625 1.41989 1.53308 1.54578 2.21913 2.42079 2.71302 3.09550 3.13520 3.51079 3.53527 3.59057 3.94865 3.98492 4.03121 4.07854 4.16720 4.20018 4.28298 4.47640 4.49216 4.68349 4.71797 4.74598 4.78639 4.84263 4.87612 4.97262 5.08036 5.12005 5.17303 5.33522 5.37827 5.39195 5.51118 5.63792 5.67663 5.70935 5.79353 5.91665 6.20112 6.22318 6.39997 6.65340 6.83634 6.84000 7.38697 8.92628 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.017454 B = 0.002960 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.813623 B = 9457.202881 C =10270.122927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.165 4.165 3 C -0.063 4.063 4 H 0.149 0.851 5 C -0.136 4.136 6 C 0.090 3.910 7 N -0.695 5.695 8 C 0.194 3.806 9 C -0.187 4.187 10 C -0.093 4.093 11 C -0.112 4.112 12 C 0.062 3.938 13 C -0.525 4.525 14 H 0.055 0.945 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.965 3.035 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.266 1.266 21 C -0.089 4.089 22 C -0.173 4.173 23 C 0.494 3.506 24 O -0.529 6.529 25 O -0.352 6.352 26 C 0.052 3.948 27 C -0.145 4.145 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.417 0.583 34 H 0.118 0.882 35 H 0.105 0.895 36 H 0.001 0.999 37 H -0.005 1.005 38 H 0.264 0.736 39 H 0.117 0.883 40 H 0.149 0.851 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.033 -13.865 1.973 28.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.183 4.183 3 C -0.081 4.081 4 H 0.166 0.834 5 C -0.174 4.174 6 C -0.001 4.001 7 N -0.329 5.329 8 C 0.095 3.905 9 C -0.210 4.210 10 C -0.112 4.112 11 C -0.113 4.113 12 C 0.025 3.975 13 C -0.563 4.563 14 H 0.073 0.927 15 C -0.196 4.196 16 N -0.573 5.573 17 Si 0.789 3.211 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.190 1.190 21 C -0.107 4.107 22 C -0.194 4.194 23 C 0.336 3.664 24 O -0.418 6.418 25 O -0.268 6.268 26 C -0.022 4.022 27 C -0.202 4.202 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.123 0.877 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.256 0.744 34 H 0.136 0.864 35 H 0.123 0.877 36 H 0.019 0.981 37 H 0.013 0.987 38 H 0.073 0.927 39 H 0.135 0.865 40 H 0.166 0.834 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.119 0.881 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.691 -14.285 1.956 28.592 hybrid contribution 1.001 0.352 -0.288 1.100 sum -23.690 -13.932 1.668 27.534 Atomic orbital electron populations 1.24115 0.94997 1.03645 0.96068 1.22371 0.96427 0.95695 1.03825 1.21972 0.92236 0.99319 0.94619 0.83376 1.23594 0.96419 1.04844 0.92495 1.19881 1.12019 0.82021 0.86209 1.43363 1.06033 1.09562 1.73958 1.17587 0.85271 0.91472 0.96203 1.20644 0.91351 0.99530 1.09434 1.20789 0.97126 0.94274 0.99002 1.20162 0.96330 0.94179 1.00677 1.18000 0.89552 0.93892 0.96037 1.21443 1.03176 1.35884 0.95777 0.92710 1.25955 0.96161 0.96385 1.01129 1.70090 1.10479 1.43534 1.33237 0.85444 0.77310 0.78934 0.79362 1.19545 1.20630 1.18996 1.20877 0.91704 0.99425 0.98726 1.20680 0.97877 0.92788 1.08098 1.23295 0.73653 0.86812 0.82655 1.90637 1.41754 1.27920 1.81503 1.86520 1.72348 1.46452 1.21472 1.23305 1.01691 0.88912 0.88255 1.21810 1.01739 1.03328 0.93290 0.86659 0.86658 0.87670 0.86402 0.86868 0.74418 0.86382 0.87677 0.98102 0.98664 0.92678 0.86452 0.83352 0.90683 0.92257 0.90737 0.88073 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 14.35 67.78 0.97 -0.73 16 2 C -0.16 -2.57 8.60 25.65 0.22 -2.35 16 3 C -0.06 -1.03 5.91 -11.54 -0.07 -1.10 16 4 H 0.15 1.84 8.14 -2.39 -0.02 1.82 16 5 C -0.14 -2.86 7.62 30.59 0.23 -2.63 16 6 C 0.09 1.99 1.89 2.86 0.01 1.99 16 7 N -0.70 -15.54 5.56 -302.80 -1.68 -17.23 16 8 C 0.19 5.82 6.53 38.21 0.25 6.07 16 9 C -0.19 -6.53 8.65 22.40 0.19 -6.33 16 10 C -0.09 -3.90 9.69 22.25 0.22 -3.68 16 11 C -0.11 -5.13 5.07 -19.84 -0.10 -5.23 16 12 C 0.06 3.46 5.10 29.10 0.15 3.61 16 13 C -0.52 -30.79 9.09 25.60 0.23 -30.55 16 14 H 0.05 3.16 7.74 -2.91 -0.02 3.13 16 15 C 0.00 0.08 5.46 84.65 0.46 0.54 16 16 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 17 Si 0.97 45.11 29.54 68.60 2.03 47.13 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 21 C -0.09 -3.46 9.69 22.25 0.22 -3.25 16 22 C -0.17 -5.31 9.90 22.40 0.22 -5.09 16 23 C 0.49 12.77 6.64 71.24 0.47 13.24 16 24 O -0.53 -15.81 15.90 21.97 0.35 -15.46 16 25 O -0.35 -8.41 10.16 -51.37 -0.52 -8.93 16 26 C 0.05 0.99 6.19 71.98 0.45 1.43 16 27 C -0.14 -1.87 10.29 71.98 0.74 -1.13 16 28 H 0.12 0.96 8.05 -2.91 -0.02 0.94 16 29 H 0.12 1.01 8.06 -2.91 -0.02 0.98 16 30 H 0.11 1.91 8.06 -2.91 -0.02 1.88 16 31 H 0.12 2.58 7.91 -2.39 -0.02 2.56 16 32 H 0.11 2.49 7.67 -2.38 -0.02 2.47 16 33 H 0.42 7.21 8.85 -92.71 -0.82 6.39 16 34 H 0.12 3.89 5.97 -2.91 -0.02 3.87 16 35 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 36 H 0.00 0.04 8.08 -2.38 -0.02 0.02 16 37 H 0.00 -0.30 8.08 -2.39 -0.02 -0.32 16 38 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 39 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 40 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 41 H 0.07 1.30 8.13 -2.39 -0.02 1.28 16 42 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 45 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -71.54 386.22 5.47 -66.06 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.16 Total: 20.94 kcal Atomic # 6 Polarization: -40.06 SS G_CDS: 4.86 Total: -35.20 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -1.40 Total: -74.54 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.17 Total: -24.39 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -71.54 5.47 -66.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170917611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.403 kcal (2) G-P(sol) polarization free energy of solvation -71.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds