Wall clock time and date at job start Tue Mar 31 2020 10:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 119.99944 * 2 1 4 4 H 1.08995 * 115.55264 * 25.72053 * 3 2 1 5 5 C 1.53000 * 117.49763 * 171.39101 * 3 2 1 6 6 C 1.53000 * 117.49804 * 240.01507 * 3 2 1 7 7 N 1.46499 * 117.49992 * 359.97438 * 6 3 2 8 8 C 1.39676 * 119.99837 * 65.67096 * 7 6 3 9 9 C 1.38909 * 120.07307 * 6.91431 * 8 7 6 10 10 C 1.38101 * 119.92396 * 179.76928 * 9 8 7 11 11 C 1.38279 * 120.07761 * 0.51150 * 10 9 8 12 12 C 1.50705 * 119.92979 * 179.72152 * 11 10 9 13 13 C 1.50698 * 109.46910 * 270.01784 * 12 11 10 14 14 H 1.07994 * 120.00246 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99649 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99868 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99726 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47098 * 60.00525 * 17 15 13 19 19 H 1.48501 * 109.47170 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47469 * 300.00344 * 17 15 13 21 21 C 1.38289 * 120.14881 * 359.74385 * 11 10 9 22 22 C 1.38102 * 120.07219 * 359.97438 * 21 11 10 23 23 C 1.50699 * 117.50268 * 145.02254 * 6 3 2 24 24 O 1.20830 * 119.99654 * 23.93128 * 23 6 3 25 25 O 1.34228 * 120.00182 * 203.93847 * 23 6 3 26 26 C 1.45201 * 116.99651 * 179.97438 * 25 23 6 27 27 C 1.53007 * 109.46764 * 180.02562 * 26 25 23 28 28 H 1.08003 * 119.99970 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00011 * 179.72665 * 1 2 3 30 30 H 1.08003 * 119.99970 * 179.97438 * 2 1 3 31 31 H 1.09006 * 117.49835 * 214.97383 * 5 3 2 32 32 H 1.08995 * 117.49755 * 359.97438 * 5 3 2 33 33 H 0.97000 * 120.00349 * 245.67229 * 7 6 3 34 34 H 1.08003 * 120.03829 * 0.02562 * 9 8 7 35 35 H 1.08007 * 119.96582 * 180.25128 * 10 9 8 36 36 H 1.09001 * 109.46636 * 30.02071 * 12 11 10 37 37 H 1.09006 * 109.46617 * 150.01928 * 12 11 10 38 38 H 0.96996 * 119.99462 * 179.97438 * 16 15 13 39 39 H 1.08002 * 119.96291 * 179.97438 * 21 11 10 40 40 H 1.08000 * 120.04035 * 180.02562 * 22 21 11 41 41 H 1.09000 * 109.47107 * 299.99546 * 26 25 23 42 42 H 1.08999 * 109.47315 * 60.00047 * 26 25 23 43 43 H 1.08999 * 109.47273 * 59.99890 * 27 26 25 44 44 H 1.09000 * 109.46936 * 179.97438 * 27 26 25 45 45 H 1.09000 * 109.46831 * 299.99585 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.5313 2.1552 0.4268 5 6 3.5788 1.2459 0.2032 6 6 3.0041 1.5777 -1.1755 7 7 3.1038 0.5499 -2.2146 8 6 1.9966 0.2547 -3.0134 9 6 0.8470 1.0292 -2.9234 10 6 -0.2442 0.7375 -3.7180 11 6 -0.1971 -0.3306 -4.5949 12 6 -1.3921 -0.6498 -5.4560 13 6 -2.2940 -1.6121 -4.7268 14 1 -2.0287 -1.9576 -3.7386 15 6 -3.4584 -2.0505 -5.3210 16 7 -3.7817 -1.6293 -6.5242 17 14 -4.5767 -3.2427 -4.4169 18 1 -5.0329 -2.6261 -3.1453 19 1 -5.7541 -3.5573 -5.2654 20 1 -3.8319 -4.4929 -4.1214 21 6 0.9438 -1.1070 -4.6832 22 6 2.0407 -0.8173 -3.8957 23 6 3.1240 3.0013 -1.6551 24 8 2.8689 3.9146 -0.9062 25 8 3.5140 3.2548 -2.9142 26 6 3.6068 4.6494 -3.3074 27 6 4.0622 4.7390 -4.7654 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0045 30 1 1.8500 -0.9353 0.0004 31 1 4.0436 2.0574 0.7632 32 1 4.0306 0.2631 0.3372 33 1 3.9386 0.0743 -2.3480 34 1 0.8081 1.8611 -2.2357 35 1 -1.1369 1.3418 -3.6515 36 1 -1.9391 0.2678 -5.6727 37 1 -1.0568 -1.1022 -6.3893 38 1 -4.6007 -1.9380 -6.9422 39 1 0.9772 -1.9408 -5.3689 40 1 2.9316 -1.4237 -3.9654 41 1 2.6303 5.1223 -3.2025 42 1 4.3281 5.1597 -2.6691 43 1 3.3406 4.2288 -5.4035 44 1 4.1314 5.7860 -5.0607 45 1 5.0386 4.2661 -4.8707 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170917613.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:53 Heat of formation + Delta-G solvation = -15.620338 kcal Electronic energy + Delta-G solvation = -26322.474022 eV Core-core repulsion = 22692.188432 eV Total energy + Delta-G solvation = -3630.285590 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.97796 -39.12778 -37.91752 -36.50507 -34.25350 -32.95964 -32.10211 -31.80442 -30.16119 -29.69495 -26.31488 -25.37209 -23.28752 -23.02779 -22.68272 -21.88889 -20.60725 -20.14841 -19.31026 -17.95010 -16.92742 -16.88743 -16.46863 -16.21473 -15.81308 -14.90259 -14.44616 -14.35625 -14.19217 -13.98610 -13.63627 -13.31927 -12.94176 -12.92270 -12.74140 -12.65658 -12.42212 -12.17194 -12.07324 -11.74691 -11.56975 -11.26663 -11.19632 -11.13545 -10.89895 -10.66721 -10.62840 -10.61011 -10.51559 -10.08125 -9.83815 -9.40015 -9.26248 -8.93558 -8.35549 -8.16717 -6.79982 -5.95975 -4.00206 1.75894 2.16911 2.26260 2.32285 2.64534 3.25346 3.35039 3.39180 3.42236 3.64697 4.37959 4.41277 4.46762 4.50567 4.75235 4.75529 4.80920 4.99699 5.06846 5.08342 5.32399 5.36799 5.37954 5.48658 5.56906 5.60217 5.60853 5.75845 5.83131 6.05036 6.10643 6.15789 6.31231 6.35760 6.42641 6.68960 6.74166 6.79886 6.87022 7.32478 7.33493 7.36944 7.59686 7.66879 7.83929 7.99449 8.00822 8.03556 8.42909 9.05305 9.62969 11.12592 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015123 B = 0.003669 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.005137 B = 7628.971846 C = 8622.499388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.131 4.131 3 C -0.077 4.077 4 H 0.124 0.876 5 C -0.134 4.134 6 C 0.105 3.895 7 N -0.710 5.710 8 C 0.187 3.813 9 C -0.173 4.173 10 C -0.084 4.084 11 C -0.078 4.078 12 C 0.053 3.947 13 C -0.507 4.507 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.084 4.084 22 C -0.185 4.185 23 C 0.491 3.509 24 O -0.515 6.515 25 O -0.337 6.337 26 C 0.060 3.940 27 C -0.152 4.152 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.401 0.599 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.261 0.739 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.639 8.405 10.643 22.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.149 4.149 3 C -0.097 4.097 4 H 0.141 0.859 5 C -0.172 4.172 6 C 0.012 3.988 7 N -0.343 5.343 8 C 0.089 3.911 9 C -0.195 4.195 10 C -0.102 4.102 11 C -0.079 4.079 12 C 0.016 3.984 13 C -0.545 4.545 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.102 4.102 22 C -0.207 4.207 23 C 0.333 3.667 24 O -0.403 6.403 25 O -0.253 6.253 26 C -0.013 4.013 27 C -0.209 4.209 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.237 0.763 34 H 0.117 0.883 35 H 0.131 0.869 36 H 0.042 0.958 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.134 0.866 40 H 0.126 0.874 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.361 8.820 10.768 22.252 hybrid contribution -0.390 -0.604 0.296 0.778 sum 16.971 8.215 11.063 21.861 Atomic orbital electron populations 1.23828 0.95687 1.02364 0.97332 1.21931 0.95385 0.95078 1.02489 1.21822 0.92059 0.99153 0.96634 0.85860 1.23504 0.96689 1.04342 0.92650 1.19744 1.10049 0.83966 0.85018 1.43366 1.12771 1.41387 1.36780 1.17430 0.87192 0.94442 0.91994 1.20395 0.93986 1.01390 1.03695 1.20798 0.96865 0.97358 0.95198 1.20446 0.96183 0.93718 0.97562 1.18244 0.89407 0.96988 0.93733 1.21079 1.05051 1.26126 1.02284 0.92617 1.25010 0.97806 0.96613 0.94960 1.69951 1.24820 1.44587 1.14198 0.86649 0.80105 0.81557 0.79664 1.20234 1.21330 1.20253 1.20796 0.92290 0.98797 0.98364 1.20406 0.99829 0.99087 1.01407 1.23134 0.72597 0.90927 0.80051 1.90658 1.47009 1.46386 1.56238 1.86589 1.78018 1.30377 1.30292 1.23053 1.01992 0.79421 0.96874 1.21793 1.02689 1.02660 0.93759 0.88570 0.87749 0.87087 0.86964 0.86622 0.76338 0.88296 0.86909 0.95773 0.95726 0.92928 0.86623 0.87398 0.91230 0.91520 0.91049 0.90322 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 13.60 29.01 0.39 -1.60 16 2 C -0.13 -1.56 7.59 -36.03 -0.27 -1.83 16 3 C -0.08 -0.87 4.67 -91.77 -0.43 -1.29 16 4 H 0.12 1.42 7.87 -51.93 -0.41 1.01 16 5 C -0.13 -1.19 9.78 -26.73 -0.26 -1.45 16 6 C 0.10 1.23 1.73 -132.97 -0.23 1.00 16 7 N -0.71 -8.72 4.98 -47.06 -0.23 -8.95 16 8 C 0.19 2.93 5.78 -83.79 -0.48 2.45 16 9 C -0.17 -3.00 7.50 -39.38 -0.30 -3.29 16 10 C -0.08 -1.67 9.69 -39.62 -0.38 -2.06 16 11 C -0.08 -1.71 5.07 -104.59 -0.53 -2.24 16 12 C 0.05 1.39 5.10 -29.03 -0.15 1.24 16 13 C -0.51 -14.28 9.09 -34.44 -0.31 -14.60 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 17 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.08 -1.64 9.69 -39.61 -0.38 -2.02 16 22 C -0.19 -3.05 9.90 -39.38 -0.39 -3.44 16 23 C 0.49 6.67 6.94 36.00 0.25 6.92 16 24 O -0.51 -7.72 16.17 -18.75 -0.30 -8.02 16 25 O -0.34 -4.52 9.95 -39.25 -0.39 -4.91 16 26 C 0.06 0.65 6.19 37.16 0.23 0.88 16 27 C -0.15 -1.31 10.29 37.16 0.38 -0.93 16 28 H 0.10 1.21 8.05 -52.48 -0.42 0.79 16 29 H 0.10 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 31 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.40 4.09 8.85 -40.82 -0.36 3.73 16 34 H 0.10 1.66 5.98 -52.48 -0.31 1.35 16 35 H 0.11 2.25 8.06 -52.48 -0.42 1.83 16 36 H 0.02 0.66 8.08 -51.93 -0.42 0.24 16 37 H 0.02 0.67 8.08 -51.93 -0.42 0.25 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 39 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 40 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 42 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 383.55 15.07 5.78 5.78 Total: -1.00 -31.80 383.55 -9.36 -41.16 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.96 Total: 5.03 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -2.96 Total: -20.73 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.50 Total: -34.95 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.69 Total: -12.93 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.80 -9.36 -41.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170917613.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.536 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds