Wall clock time and date at job start Tue Mar 31 2020 10:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 119.99944 * 2 1 4 4 H 1.08995 * 115.55264 * 25.72053 * 3 2 1 5 5 C 1.53000 * 117.49763 * 171.39101 * 3 2 1 6 6 C 1.53000 * 117.49804 * 240.01507 * 3 2 1 7 7 N 1.46499 * 117.49992 * 359.97438 * 6 3 2 8 8 C 1.39676 * 119.99837 * 65.67096 * 7 6 3 9 9 C 1.38909 * 120.07307 * 6.91431 * 8 7 6 10 10 C 1.38101 * 119.92396 * 179.76928 * 9 8 7 11 11 C 1.38279 * 120.07761 * 0.51150 * 10 9 8 12 12 C 1.50705 * 119.92979 * 179.72152 * 11 10 9 13 13 C 1.50698 * 109.46910 * 270.01784 * 12 11 10 14 14 H 1.07994 * 120.00246 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99649 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99868 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99726 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47098 * 60.00525 * 17 15 13 19 19 H 1.48501 * 109.47170 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47469 * 300.00344 * 17 15 13 21 21 C 1.38289 * 120.14881 * 359.74385 * 11 10 9 22 22 C 1.38102 * 120.07219 * 359.97438 * 21 11 10 23 23 C 1.50699 * 117.50268 * 145.02254 * 6 3 2 24 24 O 1.20830 * 119.99654 * 23.93128 * 23 6 3 25 25 O 1.34228 * 120.00182 * 203.93847 * 23 6 3 26 26 C 1.45201 * 116.99651 * 179.97438 * 25 23 6 27 27 C 1.53007 * 109.46764 * 180.02562 * 26 25 23 28 28 H 1.08003 * 119.99970 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00011 * 179.72665 * 1 2 3 30 30 H 1.08003 * 119.99970 * 179.97438 * 2 1 3 31 31 H 1.09006 * 117.49835 * 214.97383 * 5 3 2 32 32 H 1.08995 * 117.49755 * 359.97438 * 5 3 2 33 33 H 0.97000 * 120.00349 * 245.67229 * 7 6 3 34 34 H 1.08003 * 120.03829 * 0.02562 * 9 8 7 35 35 H 1.08007 * 119.96582 * 180.25128 * 10 9 8 36 36 H 1.09001 * 109.46636 * 30.02071 * 12 11 10 37 37 H 1.09006 * 109.46617 * 150.01928 * 12 11 10 38 38 H 0.96996 * 119.99462 * 179.97438 * 16 15 13 39 39 H 1.08002 * 119.96291 * 179.97438 * 21 11 10 40 40 H 1.08000 * 120.04035 * 180.02562 * 22 21 11 41 41 H 1.09000 * 109.47107 * 299.99546 * 26 25 23 42 42 H 1.08999 * 109.47315 * 60.00047 * 26 25 23 43 43 H 1.08999 * 109.47273 * 59.99890 * 27 26 25 44 44 H 1.09000 * 109.46936 * 179.97438 * 27 26 25 45 45 H 1.09000 * 109.46831 * 299.99585 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.5313 2.1552 0.4268 5 6 3.5788 1.2459 0.2032 6 6 3.0041 1.5777 -1.1755 7 7 3.1038 0.5499 -2.2146 8 6 1.9966 0.2547 -3.0134 9 6 0.8470 1.0292 -2.9234 10 6 -0.2442 0.7375 -3.7180 11 6 -0.1971 -0.3306 -4.5949 12 6 -1.3921 -0.6498 -5.4560 13 6 -2.2940 -1.6121 -4.7268 14 1 -2.0287 -1.9576 -3.7386 15 6 -3.4584 -2.0505 -5.3210 16 7 -3.7817 -1.6293 -6.5242 17 14 -4.5767 -3.2427 -4.4169 18 1 -5.0329 -2.6261 -3.1453 19 1 -5.7541 -3.5573 -5.2654 20 1 -3.8319 -4.4929 -4.1214 21 6 0.9438 -1.1070 -4.6832 22 6 2.0407 -0.8173 -3.8957 23 6 3.1240 3.0013 -1.6551 24 8 2.8689 3.9146 -0.9062 25 8 3.5140 3.2548 -2.9142 26 6 3.6068 4.6494 -3.3074 27 6 4.0622 4.7390 -4.7654 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0045 30 1 1.8500 -0.9353 0.0004 31 1 4.0436 2.0574 0.7632 32 1 4.0306 0.2631 0.3372 33 1 3.9386 0.0743 -2.3480 34 1 0.8081 1.8611 -2.2357 35 1 -1.1369 1.3418 -3.6515 36 1 -1.9391 0.2678 -5.6727 37 1 -1.0568 -1.1022 -6.3893 38 1 -4.6007 -1.9380 -6.9422 39 1 0.9772 -1.9408 -5.3689 40 1 2.9316 -1.4237 -3.9654 41 1 2.6303 5.1223 -3.2025 42 1 4.3281 5.1597 -2.6691 43 1 3.3406 4.2288 -5.4035 44 1 4.1314 5.7860 -5.0607 45 1 5.0386 4.2661 -4.8707 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170917613.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:52 Heat of formation + Delta-G solvation = -31.976996 kcal Electronic energy + Delta-G solvation = -26323.183300 eV Core-core repulsion = 22692.188432 eV Total energy + Delta-G solvation = -3630.994868 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.98861 -40.36102 -39.08155 -37.56873 -35.76666 -34.62692 -33.34636 -32.60767 -31.62178 -31.34291 -28.00860 -26.45369 -24.85322 -24.09477 -23.77222 -23.15961 -21.86822 -21.39754 -20.34462 -18.98065 -18.45775 -18.11769 -17.86623 -17.49046 -16.83857 -16.71420 -15.85485 -15.53849 -15.26516 -15.14013 -14.73584 -14.60664 -14.39354 -14.26772 -14.12526 -13.79207 -13.65209 -13.26291 -13.17918 -13.15126 -12.94823 -12.57458 -12.52144 -12.42933 -12.38506 -12.13648 -12.02812 -11.65004 -11.61236 -11.55471 -11.47127 -11.33695 -10.73276 -10.56038 -10.07328 -9.62230 -8.31767 -7.99390 -6.27884 0.69418 0.78125 0.87593 1.31311 1.40632 1.43533 1.51566 1.67090 2.20808 2.42805 2.77466 3.14934 3.16138 3.49535 3.58596 3.67284 3.95850 4.02281 4.04695 4.13224 4.19522 4.23631 4.29019 4.51112 4.52992 4.67589 4.74313 4.78285 4.79713 4.87430 4.90132 5.01668 5.10275 5.16601 5.20120 5.37312 5.39501 5.41528 5.56343 5.71633 5.72559 5.82054 5.84070 5.97058 6.24783 6.25034 6.44730 6.67916 6.85244 6.92992 7.40214 8.93893 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015123 B = 0.003669 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.005137 B = 7628.971846 C = 8622.499388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.119 4.119 3 C -0.090 4.090 4 H 0.116 0.884 5 C -0.097 4.097 6 C 0.086 3.914 7 N -0.692 5.692 8 C 0.209 3.791 9 C -0.169 4.169 10 C -0.093 4.093 11 C -0.113 4.113 12 C 0.063 3.937 13 C -0.523 4.523 14 H 0.054 0.946 15 C 0.002 3.998 16 N -0.933 5.933 17 Si 0.963 3.037 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.266 1.266 21 C -0.090 4.090 22 C -0.176 4.176 23 C 0.487 3.513 24 O -0.535 6.535 25 O -0.350 6.350 26 C 0.053 3.947 27 C -0.146 4.146 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.144 0.856 33 H 0.417 0.583 34 H 0.104 0.896 35 H 0.099 0.901 36 H -0.007 1.007 37 H -0.001 1.001 38 H 0.264 0.736 39 H 0.113 0.887 40 H 0.146 0.854 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.055 0.945 44 H 0.102 0.898 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.312 7.656 12.713 25.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.137 4.137 3 C -0.109 4.109 4 H 0.134 0.866 5 C -0.134 4.134 6 C -0.006 4.006 7 N -0.326 5.326 8 C 0.109 3.891 9 C -0.191 4.191 10 C -0.112 4.112 11 C -0.114 4.114 12 C 0.027 3.973 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.195 4.195 16 N -0.574 5.574 17 Si 0.787 3.213 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.191 1.191 21 C -0.109 4.109 22 C -0.198 4.198 23 C 0.330 3.670 24 O -0.425 6.425 25 O -0.266 6.266 26 C -0.020 4.020 27 C -0.203 4.203 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.162 0.838 33 H 0.256 0.744 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.011 0.989 37 H 0.017 0.983 38 H 0.073 0.927 39 H 0.131 0.869 40 H 0.164 0.836 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.120 0.880 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 20.083 8.075 12.854 25.175 hybrid contribution -1.104 -0.253 -0.316 1.176 sum 18.979 7.822 12.538 24.054 Atomic orbital electron populations 1.23842 0.96443 1.01942 0.99145 1.22071 0.95003 0.95837 1.00824 1.21822 0.93778 0.98590 0.96734 0.86574 1.23710 0.94390 1.06198 0.89079 1.19906 1.12141 0.82867 0.85640 1.43283 1.12248 1.41043 1.35991 1.17431 0.87412 0.93110 0.91191 1.20325 0.93835 1.01775 1.03171 1.20683 0.97577 0.97027 0.95872 1.20089 0.95936 0.96257 0.99156 1.17979 0.90916 0.94960 0.93494 1.21404 1.05796 1.26523 1.02337 0.92734 1.25932 0.99407 0.98430 0.95743 1.70087 1.25477 1.45963 1.15831 0.85538 0.77981 0.79296 0.78486 1.19373 1.20709 1.19098 1.20820 0.92511 0.98476 0.99083 1.20629 0.99868 0.99245 1.00039 1.23467 0.72075 0.91490 0.79947 1.90648 1.47988 1.47125 1.56696 1.86579 1.77871 1.31850 1.30259 1.23282 1.01977 0.78411 0.98349 1.21803 1.02389 1.04127 0.91980 0.89145 0.88326 0.85891 0.85594 0.83791 0.74416 0.87784 0.88312 0.98870 0.98287 0.92736 0.86861 0.83635 0.92152 0.90352 0.92552 0.87986 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.44 13.60 67.78 0.92 -3.52 16 2 C -0.12 -2.57 7.59 25.64 0.19 -2.37 16 3 C -0.09 -1.78 4.67 -11.54 -0.05 -1.83 16 4 H 0.12 2.51 7.87 -2.39 -0.02 2.49 16 5 C -0.10 -1.28 9.78 30.60 0.30 -0.98 16 6 C 0.09 1.77 1.73 2.86 0.00 1.77 16 7 N -0.69 -14.46 4.98 -302.80 -1.51 -15.97 16 8 C 0.21 6.05 5.78 38.21 0.22 6.28 16 9 C -0.17 -5.77 7.50 22.40 0.17 -5.61 16 10 C -0.09 -3.86 9.69 22.25 0.22 -3.64 16 11 C -0.11 -5.16 5.07 -19.84 -0.10 -5.26 16 12 C 0.06 3.53 5.10 29.10 0.15 3.68 16 13 C -0.52 -30.56 9.09 25.60 0.23 -30.32 16 14 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 15 C 0.00 0.14 5.46 84.66 0.46 0.60 16 16 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 17 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 21 C -0.09 -3.52 9.69 22.25 0.22 -3.31 16 22 C -0.18 -5.35 9.90 22.40 0.22 -5.13 16 23 C 0.49 12.29 6.94 71.24 0.49 12.78 16 24 O -0.53 -15.30 16.17 21.95 0.35 -14.94 16 25 O -0.35 -8.80 9.95 -51.39 -0.51 -9.31 16 26 C 0.05 1.08 6.19 71.98 0.45 1.53 16 27 C -0.15 -2.30 10.29 71.98 0.74 -1.56 16 28 H 0.09 2.32 8.05 -2.91 -0.02 2.30 16 29 H 0.10 2.55 8.06 -2.91 -0.02 2.53 16 30 H 0.12 2.37 8.06 -2.91 -0.02 2.34 16 31 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.42 6.44 8.85 -92.71 -0.82 5.62 16 34 H 0.10 3.45 5.98 -2.91 -0.02 3.44 16 35 H 0.10 4.25 8.06 -2.91 -0.02 4.22 16 36 H -0.01 -0.42 8.08 -2.39 -0.02 -0.44 16 37 H 0.00 -0.07 8.08 -2.38 -0.02 -0.09 16 38 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 40 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 41 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 42 H 0.08 1.40 8.13 -2.39 -0.02 1.38 16 43 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -71.61 383.55 5.64 -65.98 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.16 Total: 21.39 kcal Atomic # 6 Polarization: -41.73 SS G_CDS: 4.83 Total: -36.90 kcal Atomic # 7 Polarization: -72.03 SS G_CDS: -1.22 Total: -73.25 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.16 Total: -24.25 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -71.61 5.64 -65.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170917613.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.002 kcal (2) G-P(sol) polarization free energy of solvation -71.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds